FFCP PHASE1:Hg19::chr1:38019843..38019859,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79753 | |EntrezGene=79753 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=30587 | |HGNC=30587 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000468040_5end | |association_with_transcript=0bp_to_ENST00000468040_5end | ||
|cluster_id=chr1:38019843..38019859,- | |||
|coexpression_cluster_id=C175 | |||
|description=CAGE_peak_2_at_SNIP1_5end | |description=CAGE_peak_2_at_SNIP1_5end | ||
|id=chr1:38019843..38019859,- | |id=chr1:38019843..38019859,- | ||
|ontology_enrichment_celltype=CL:0000037!2.58e-19!172;CL:0000566!2.58e-19!172;CL:0000738!5.97e-19!140;CL:0002057!4.24e-18!42;CL:0000860!1.71e-17!45;CL:0000988!1.09e-16!182;CL:0002032!1.95e-16!165;CL:0000837!1.95e-16!165;CL:0002087!1.74e-14!119;CL:0002031!2.64e-14!124;CL:0000766!2.48e-13!76;CL:0000763!4.18e-12!112;CL:0000049!4.18e-12!112;CL:0000557!1.26e-10!71;CL:0002009!2.59e-10!65;CL:0002194!1.55e-09!63;CL:0000576!1.55e-09!63;CL:0000040!1.55e-09!63;CL:0000559!1.55e-09!63;CL:0000839!2.69e-09!70;CL:0000094!8.64e-07!8 | |ontology_enrichment_celltype=CL:0000037!2.58e-19!172;CL:0000566!2.58e-19!172;CL:0000738!5.97e-19!140;CL:0002057!4.24e-18!42;CL:0000860!1.71e-17!45;CL:0000988!1.09e-16!182;CL:0002032!1.95e-16!165;CL:0000837!1.95e-16!165;CL:0002087!1.74e-14!119;CL:0002031!2.64e-14!124;CL:0000766!2.48e-13!76;CL:0000763!4.18e-12!112;CL:0000049!4.18e-12!112;CL:0000557!1.26e-10!71;CL:0002009!2.59e-10!65;CL:0002194!1.55e-09!63;CL:0000576!1.55e-09!63;CL:0000040!1.55e-09!63;CL:0000559!1.55e-09!63;CL:0000839!2.69e-09!70;CL:0000094!8.64e-07!8 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.88e-17;33!CL:0002057;1.88e-17;33!CL:0000473;1.09e-10;39!CL:0000234;1.09e-10;39!CL:0000576;2.16e-09;48!CL:0000766;5.02e-08;69!CL:0000094;2.35e-07;8!CL:0002087;5.98e-07;104 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.19e-21,168;CL:0000738,5.85e-21,136;CL:0000988,1.35e-18,177;CL:0000860,1.84e-18,42;CL:0002057,1.84e-18,42;CL:0002032,2.90e-18,161;CL:0000837,2.90e-18,161;CL:0002087,2.11e-16,115;CL:0002031,7.64e-16,120;CL:0000766,2.16e-14,72;CL:0000473,4.04e-14,48;CL:0000234,4.04e-14,48;CL:0000763,4.17e-13,108;CL:0000049,4.17e-13,108;CL:0002009,1.77e-11,61;CL:0000557,1.86e-11,67;CL:0002194,1.27e-10,59;CL:0000576,1.27e-10,59;CL:0000040,1.27e-10,59;CL:0000559,1.27e-10,59;CL:0000839,5.31e-10,66;CL:0000094,4.54e-07,8;CL:0000134,8.89e-07,354 | |||
|ontology_enrichment_development_v019=CL:0002057;9.17e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.90e-10!80;UBERON:0001474!5.39e-10!86;UBERON:0002390!2.40e-09!102;UBERON:0003061!2.40e-09!102;UBERON:0004765!5.79e-09!101;UBERON:0001434!5.79e-09!101;UBERON:0002193!6.75e-09!112;UBERON:0002405!1.11e-08!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,3.64e-11,76;UBERON:0001474,1.55e-10,82;UBERON:0002405,2.34e-10,93;UBERON:0002390,3.59e-10,98;UBERON:0003061,3.59e-10,98;UBERON:0002193,2.67e-09,108;UBERON:0004765,7.35e-09,90;UBERON:0001434,3.36e-08,100 | |||
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| ||
|short_description=p2@SNIP1 | |short_description=p2@SNIP1 | ||
}} | }} |
Latest revision as of 21:58, 17 September 2015
Short description: | p2@SNIP1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SNIP1_5end |
Coexpression cluster: | C175_Eosinophils_Neutrophils_CD4_Basophils_CD19_CD8_Natural |
Association with transcript: | 0bp_to_ENST00000468040_5end |
EntrezGene: | SNIP1 |
HGNC: | 30587 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.19e-21 | 168 |
leukocyte | 5.85e-21 | 136 |
hematopoietic cell | 1.35e-18 | 177 |
classical monocyte | 1.84e-18 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.84e-18 | 42 |
hematopoietic oligopotent progenitor cell | 2.90e-18 | 161 |
hematopoietic multipotent progenitor cell | 2.90e-18 | 161 |
nongranular leukocyte | 2.11e-16 | 115 |
hematopoietic lineage restricted progenitor cell | 7.64e-16 | 120 |
myeloid leukocyte | 2.16e-14 | 72 |
defensive cell | 4.04e-14 | 48 |
phagocyte | 4.04e-14 | 48 |
myeloid cell | 4.17e-13 | 108 |
common myeloid progenitor | 4.17e-13 | 108 |
macrophage dendritic cell progenitor | 1.77e-11 | 61 |
granulocyte monocyte progenitor cell | 1.86e-11 | 67 |
monopoietic cell | 1.27e-10 | 59 |
monocyte | 1.27e-10 | 59 |
monoblast | 1.27e-10 | 59 |
promonocyte | 1.27e-10 | 59 |
myeloid lineage restricted progenitor cell | 5.31e-10 | 66 |
granulocyte | 4.54e-07 | 8 |
mesenchymal cell | 8.89e-07 | 354 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 3.64e-11 | 76 |
bone element | 1.55e-10 | 82 |
immune system | 2.34e-10 | 93 |
hematopoietic system | 3.59e-10 | 98 |
blood island | 3.59e-10 | 98 |
hemolymphoid system | 2.67e-09 | 108 |
skeletal element | 7.35e-09 | 90 |
skeletal system | 3.36e-08 | 100 |