FFCP PHASE1:Hg19::chr7:27219849..27219867,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:27219849..27219867,-
|short_description=p6@HOXA10
|description=CAGE_peak_6_at_HOXA10_5end
|association_with_transcript=8bp_to_uc003syw.3_5end
|EntrezGene=...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3206 | |EntrezGene=3206 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5100 | |HGNC=5100 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=8bp_to_uc003syw.3_5end | |||
|cluster_id=chr7:27219849..27219867,- | |||
|description=CAGE_peak_6_at_HOXA10_5end | |||
|id=chr7:27219849..27219867,- | |||
|ontology_enrichment_celltype=CL:1000507!3.28e-16!12;CL:1000494!3.28e-16!12;CL:1000497!3.29e-16!18;CL:0002518!3.29e-16!18;CL:1000449!1.54e-13!16;CL:0002620!5.58e-11!23;CL:0002681!1.72e-09!13;CL:0002584!1.72e-09!13;CL:0000499!2.19e-07!27;CL:0000062!2.33e-07!11;CL:0000375!2.33e-07!11;CL:0000335!2.33e-07!11;CL:0000153!3.60e-07!9;CL:0000447!3.60e-07!9 | |||
|ontology_enrichment_celltype_v019=CL:1000507;4.78e-46;10!CL:1000494;4.78e-46;10!CL:1000497;5.57e-32;17!CL:0002518;5.57e-32;17!CL:1000449;4.76e-30;15!CL:0002681;5.87e-19;12!CL:0002584;5.87e-19;12!CL:0000239;1.63e-15;3!CL:1000615;1.63e-15;3!CL:0002306;1.63e-15;3!CL:0000650;6.09e-11;2!CL:1000500;6.09e-11;2!CL:1000618;6.09e-11;2!CL:1001318;6.09e-11;2!CL:0002173;6.09e-11;2!CL:0002588;8.39e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:1000507,3.39e-46,10;CL:1000494,3.39e-46,10;CL:1000497,4.22e-32,17;CL:0002518,4.22e-32,17;CL:1000449,3.80e-30,15;CL:0002681,5.16e-19,12;CL:0002584,5.16e-19,12;CL:0000239,1.67e-15,3;CL:1000615,1.67e-15,3;CL:0002306,1.67e-15,3;CL:0000650,7.05e-11,2;CL:1000500,7.05e-11,2;CL:1000618,7.05e-11,2;CL:1001318,7.05e-11,2;CL:0002173,7.05e-11,2;CL:0002588,8.80e-10,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:17!3.01e-07!5;DOID:450!3.01e-07!5;DOID:66!3.01e-07!5;DOID:423!3.01e-07!5;DOID:0080000!3.01e-07!5;DOID:11722!3.01e-07!5 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0006554!1.13e-27!44;UBERON:0001008!8.10e-27!45;UBERON:0002113!3.06e-18!27;UBERON:0003918!3.06e-18!27;UBERON:0005095!3.06e-18!27;UBERON:0007687!3.06e-18!27;UBERON:0009773!3.28e-16!12;UBERON:0001231!3.28e-16!12;UBERON:0004810!3.28e-16!12;UBERON:0003064!5.08e-16!37;UBERON:0000489!6.62e-16!32;UBERON:0000080!1.48e-13!18;UBERON:0002120!1.48e-13!18;UBERON:0004875!1.48e-13!18;UBERON:0005721!1.48e-13!18;UBERON:0005754!1.48e-13!18;UBERON:0007297!1.48e-13!18;UBERON:0004211!1.54e-13!16;UBERON:0001285!1.54e-13!16;UBERON:0007684!1.54e-13!16;UBERON:0003220!1.54e-13!16;UBERON:0004208!1.54e-13!16;UBERON:0006555!1.58e-12!17;UBERON:0005103!1.58e-12!17;UBERON:0000083!1.58e-12!17;UBERON:0009201!1.58e-12!17;UBERON:0004819!1.58e-12!17;UBERON:0006553!1.58e-12!17;UBERON:0003074!1.58e-12!17;UBERON:0003060!1.58e-12!17;UBERON:0004876!8.34e-12!20;UBERON:0003887!4.65e-11!21;UBERON:0000058!6.88e-11!26;UBERON:0003937!1.54e-09!12;UBERON:0005399!1.54e-09!12;UBERON:0001225!1.72e-09!13;UBERON:0008987!1.72e-09!13;UBERON:0001737!6.53e-09!9;UBERON:0002367!1.62e-08!11;UBERON:0010147!1.62e-08!11;UBERON:0009846!1.62e-08!11;UBERON:0003353!1.62e-08!11;UBERON:0004902!1.62e-08!11;UBERON:0003820!1.62e-08!11;UBERON:0009847!1.62e-08!11;UBERON:0001046!6.94e-08!19;UBERON:0000162!9.68e-08!14;UBERON:0001353!9.68e-08!14;UBERON:0000163!9.68e-08!14;UBERON:0006866!9.68e-08!14;UBERON:0000164!9.68e-08!14;UBERON:0000931!9.68e-08!14;UBERON:0003586!2.08e-07!5;UBERON:0001851!2.78e-07!16;UBERON:0004122!4.36e-07!15;UBERON:0005172!5.96e-07!55;UBERON:0005173!5.96e-07!55;UBERON:0003104!9.74e-07!238;UBERON:0009142!9.74e-07!238 | |||
|ontology_enrichment_uberon_v019=UBERON:0004211;4.78e-46;10!UBERON:0009773;4.78e-46;10!UBERON:0001231;4.78e-46;10!UBERON:0004810;4.78e-46;10!UBERON:0002113;6.33e-31;24!UBERON:0011143;6.33e-31;24!UBERON:0006555;4.76e-30;15!UBERON:0004819;4.76e-30;15!UBERON:0001285;4.76e-30;15!UBERON:0007684;4.76e-30;15!UBERON:0000489;4.33e-25;29!UBERON:0006554;3.71e-24;30!UBERON:0001008;3.71e-24;30!UBERON:0001225;5.87e-19;12!UBERON:0008987;5.87e-19;12!UBERON:0006853;1.63e-15;3!UBERON:0007685;1.63e-15;3!UBERON:0004134;1.63e-15;3!UBERON:0001851;5.74e-15;15!UBERON:0000353;5.74e-15;15!UBERON:0003567;6.09e-11;2!UBERON:0003838;6.09e-11;2!UBERON:0003586;6.09e-11;2!UBERON:0005169;6.09e-11;2!UBERON:0002321;6.09e-11;2!UBERON:0005215;6.09e-11;2!UBERON:0002303;6.09e-11;2!UBERON:0002319;6.09e-11;2!UBERON:0005172;6.99e-11;52!UBERON:0005173;6.99e-11;52!UBERON:0002417;1.24e-07;58!UBERON:0000916;1.24e-07;58 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004810,3.39e-46,10;UBERON:0004211,3.80e-30,15;UBERON:0009773,3.80e-30,15;UBERON:0001231,3.80e-30,15;UBERON:0001285,3.80e-30,15;UBERON:0007684,3.80e-30,15;UBERON:0004208,3.80e-30,15;UBERON:0002113,2.08e-28,26;UBERON:0003918,2.08e-28,26;UBERON:0011143,2.08e-28,26;UBERON:0005095,2.08e-28,26;UBERON:0007687,2.08e-28,26;UBERON:0006555,3.87e-28,16;UBERON:0004819,3.87e-28,16;UBERON:0000489,2.35e-23,31;UBERON:0001225,5.16e-19,12;UBERON:0008987,5.16e-19,12;UBERON:0006853,1.67e-15,3;UBERON:0007685,1.67e-15,3;UBERON:0004134,1.67e-15,3;UBERON:0001851,5.18e-15,15;UBERON:0000353,5.18e-15,15;UBERON:0006554,2.02e-14,47;UBERON:0005172,3.61e-14,54;UBERON:0005173,3.61e-14,54;UBERON:0001008,4.63e-14,48;UBERON:0002417,1.93e-12,60;UBERON:0000916,1.93e-12,60;UBERON:0003567,7.05e-11,2;UBERON:0003838,7.05e-11,2;UBERON:0003586,7.05e-11,2;UBERON:0005169,7.05e-11,2;UBERON:0002321,7.05e-11,2;UBERON:0005215,7.05e-11,2;UBERON:0002303,7.05e-11,2;UBERON:0002319,7.05e-11,2;UBERON:0003103,4.19e-09,68 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,2.00535164254356,0.289693037921647,0.795285947051099,0.486634870302636,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,1.53316637465883,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0.640672166455702,0.423863802319124,0.600182192168805,0.309157587715317,1.54584324027377,0.744467425326359,0.506328996723799,0.194874010322397,0.252433774244115,1.10459878370759,0,1.42003837006646,0.806016785821122,1.3564847384839,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.236613600079688,1.34867752062481,0.482022059766964,0.441175890929576,0.217879444092406,1.42362371466658,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,3.19125739901845,2.08014873822732,1.54324424557285,0,0.266422179016099,0,2.71310802695722,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.601892199455438,2.27407504055985,0,0.664225598535437,0.737476674166813,0.60818530127658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.40101294060657,0,0.229628896329213,0.546273504020151,0.655622074797121,3.60959690325929,1.69433741629712,3.13739907670742,1.46139224653261,2.84989398010764,0,0.170093705276516,0.863663664408557,0,4.06419656315779,4.01351819083883,6.11703055308092,3.3243040357149,4.25362033972139,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.247528499761764,0,0,0,0,0,0,0,0.429680979473094,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823611089208164,0.235624804691373,0,0,0,0,0,0,0.409499734223957,0,0,0,0,0,0,0,0,1.239293992399,0.563391205064483,1.00387946542836,1.8667317792493,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0.86101074534246,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0,0.333698283423817,1.36771666781428,0,0,0,0,0,3.7428108081644,0,0,0,0.568272293612826,0,0.296964680832639,0,0,0,0,0,0,0,0.552567831062295,7.05411693991973,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38899995946634,0,0,0,0,0,0,0,0.139423744278603,0.692552326534174,0,0,0,0,0,1.4655614944298,0,0,0,0,0,0,0,0,0,0,5.54991547741102,0,0,1.99052386215701,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.901940516486955,3.42171031610916,0,0,0,0,2.56148591426813,0,0,0,0,0,0.343972064943233,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,4.32271251462318,0,2.05913997434357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37798474120648,0,0,0,0,0,0,0,0,0,0,0.394028536495991,2.09818352539992,0,0,0,0,0,0,0,0.864221491201268,1.30634944043764,0,0,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378806010550178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0.596748666348824,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0.118193840883968,0.444925607568277,0.39246546425257,0,0,0.913158720509496,0.647782773655864,4.7775168788705,0,0,0,0.695433089210318,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0.596852325484105,0,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,0.631086248772738,0,0,0,0.371995018166751,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538951212639521,2.34640942403454,1.833621662743,1.62758471326295,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0.261185628199839,0,0,0,0,0.123766352960047,0.331397375727916,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.361439152384566,2.00535164254356,0.289693037921647,0.795285947051099,0.486634870302636,0,0,0.087834785693126,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0892997282840798,0,0.225222960966644,1.53316637465883,0.949265659568129,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.149448680551801,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538168907066586,0.640672166455702,0.423863802319124,0.600182192168805,0.309157587715317,1.54584324027377,0.744467425326359,0.506328996723799,0.194874010322397,0.252433774244115,1.10459878370759,0,1.42003837006646,0.806016785821122,1.3564847384839,0,0,0,0,0,0.116193942869518,0,0,0,0,0,0,0,0,0.236613600079688,1.34867752062481,0.482022059766964,0.441175890929576,0.217879444092406,1.42362371466658,0.269662616320329,0.196221465125346,0,0,0,0,0,0,0,0,0,0.614942192715568,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063497894292169,0,0,0,0,0,0,0,0,0,0.258543431515556,0,0,3.19125739901845,2.08014873822732,1.54324424557285,0,0.266422179016099,0,2.71310802695722,0,0,0,0.791951872933429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0.601892199455438,2.27407504055985,0,0.664225598535437,0.737476674166813,0.60818530127658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.120859449591622,0.40101294060657,0,0.229628896329213,0.546273504020151,0.655622074797121,3.60959690325929,1.69433741629712,3.13739907670742,1.46139224653261,2.84989398010764,0,0.170093705276516,0.863663664408557,0,4.06419656315779,4.01351819083883,6.11703055308092,3.3243040357149,4.25362033972139,0,0,0,0,0,0.103041011647722,0.0915694648183434,0.247528499761764,0,0,0,0,0,0,0,0.429680979473094,0,0,0.0890320356467374,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.823611089208164,0.235624804691373,0,0,0,0,0,0,0.409499734223957,0,0,0,0,0,0,0,0,1.239293992399,0.563391205064483,1.00387946542836,1.8667317792493,0,0,0.211107635297664,0,0,0,0,0,0,0.0941438007767792,0.86101074534246,0,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.614481528616916,0,0.333698283423817,1.36771666781428,0,0,0,0,0,3.7428108081644,0,0,0,0.568272293612826,0,0.296964680832639,0,0,0,0,0,0,0,0.552567831062295,7.05411693991973,0,0,0,0,0,0,0.197286811273867,0,0,0,0,0,0,0,0,0,0,0,0,0,1.38899995946634,0,0,0,0,0,0,0,0.139423744278603,0.692552326534174,0,0,0,0,0,1.4655614944298,0,0,0,0,0,0,0,0,0,0,5.54991547741102,0,0,1.99052386215701,0.265372693510018,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.901940516486955,3.42171031610916,0,0,0,0,2.56148591426813,0,0,0,0,0,0.343972064943233,0.0967563312890851,0,0,0,0,0,0,0,0,0,0,0,0,4.32271251462318,0,2.05913997434357,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.37798474120648,0,0,0,0,0,0,0,0,0,0,0.394028536495991,2.09818352539992,0,0,0,0,0,0,0,0.864221491201268,1.30634944043764,0,0,0,0,0,0,0,0,0.342173675768659,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.378806010550178,0,0,0,0,0,0,0,0,0,0,0,0,0,0.380805212168795,0,0,0.107410557042488,0,0.398095888698616,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.381382095467167,0,0.596748666348824,0,0,0,0,0,0.147856086217045,0,0,0,0,0,0,0,0,0,0,0,0,0,0.354809480650555,0,0,0,0,0.118193840883968,0.444925607568277,0.39246546425257,0,0,0.913158720509496,0.647782773655864,4.7775168788705,0,0,0,0.695433089210318,0,0,0,0,0,0,0,0.423387050190929,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0.596852325484105,0,0,0,0,0,0,0.470317296361523,0,0,0,0,0,0.509781344063451,0,0,0,0,0,0,0,0,0,0.631086248772738,0,0,0,0.371995018166751,0.462175628631418,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.538951212639521,2.34640942403454,1.833621662743,1.62758471326295,0,0,0 | ||
|short_description=p6@HOXA10 | |||
}} | }} |
Latest revision as of 02:04, 18 September 2015
Short description: | p6@HOXA10 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_HOXA10_5end |
Coexpression cluster: | NA |
Association with transcript: | 8bp_to_uc003syw.3_5end |
EntrezGene: | HOXA10 |
HGNC: | 5100 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney tubule cell | 3.39e-46 | 10 |
nephron tubule epithelial cell | 3.39e-46 | 10 |
kidney cell | 4.22e-32 | 17 |
kidney epithelial cell | 4.22e-32 | 17 |
epithelial cell of nephron | 3.80e-30 | 15 |
kidney cortical cell | 5.16e-19 | 12 |
renal cortical epithelial cell | 5.16e-19 | 12 |
brush border epithelial cell | 1.67e-15 | 3 |
kidney cortex tubule cell | 1.67e-15 | 3 |
epithelial cell of proximal tubule | 1.67e-15 | 3 |
mesangial cell | 7.05e-11 | 2 |
kidney interstitial cell | 7.05e-11 | 2 |
juxtaglomerular complex cell | 7.05e-11 | 2 |
renal interstitial pericyte | 7.05e-11 | 2 |
extraglomerular mesangial cell | 7.05e-11 | 2 |
smooth muscle cell of the umbilical vein | 8.80e-10 | 2 |