FFCP PHASE1:Hg19::chr19:41120037..41120121,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:41120037..41120121,+
|short_description=p2@LTBP4
|description=CAGE_peak_2_at_LTBP4_5end
|association_with_transcript=20bp_to_ENST00000318809,uc010xvp.1_5e...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=8425 | |EntrezGene=8425 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6717 | |HGNC=6717 | ||
|TSSclassifier=strong | |||
|UniProt=F5GYA5 | |UniProt=F5GYA5 | ||
|association_with_transcript=20bp_to_ENST00000318809,uc010xvp.1_5end | |||
|cluster_id=chr19:41120037..41120121,+ | |||
|coexpression_cluster_id=C3791 | |||
|description=CAGE_peak_2_at_LTBP4_5end | |||
|id=chr19:41120037..41120121,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.99e-14!180;CL:0000057!2.14e-13!75;CL:0000183!2.41e-11!59;CL:0000192!2.50e-10!42;CL:0000514!2.50e-10!42;CL:0000187!2.60e-10!54;CL:0002371!1.61e-08!591;CL:0000144!1.65e-08!625;CL:0000680!2.86e-08!57;CL:0000056!2.86e-08!57;CL:0000355!2.86e-08!57;CL:0000393!7.91e-08!60;CL:0000211!7.91e-08!60 | |||
|ontology_enrichment_celltype_v019=CL:0000192;2.76e-07;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,7.37e-14,76;CL:0000187,8.75e-11,55;CL:0000192,8.89e-11,43;CL:0000514,8.89e-11,43;CL:0000680,8.23e-09,58;CL:0000056,8.23e-09,58;CL:0000355,8.23e-09,58;CL:0000393,3.47e-08,61;CL:0000211,3.47e-08,61 | |||
|ontology_enrichment_development_v019=CL:0000514;2.76e-07;43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003102!4.83e-13!95;UBERON:0000914!1.03e-10!83;UBERON:0002329!1.03e-10!83;UBERON:0003077!1.03e-10!83;UBERON:0003059!1.03e-10!83;UBERON:0007282!1.03e-10!83;UBERON:0009618!1.03e-10!83;UBERON:0007285!1.03e-10!83;UBERON:0000486!9.35e-09!82;UBERON:0001444!1.89e-08!48;UBERON:0004290!2.60e-08!70;UBERON:0005256!1.09e-07!143;UBERON:0002385!1.59e-07!63;UBERON:0001015!1.59e-07!63;UBERON:0000383!1.59e-07!63;UBERON:0001134!4.37e-07!61;UBERON:0002036!4.37e-07!61;UBERON:0003082!4.37e-07!61;UBERON:0001135!4.61e-07!15 | |||
|ontology_enrichment_uberon_v019=UBERON:0001135;4.54e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003102,6.86e-14,99;UBERON:0007503,2.53e-09,78;UBERON:0000486,3.40e-09,83;UBERON:0002329,1.01e-08,71;UBERON:0003059,1.01e-08,71;UBERON:0007282,1.01e-08,71;UBERON:0004290,1.01e-08,71;UBERON:0009618,1.01e-08,71;UBERON:0007524,2.33e-08,73;UBERON:0003077,3.32e-08,72;UBERON:0007285,3.32e-08,72;UBERON:0001444,3.63e-08,49;UBERON:0002385,6.27e-08,64;UBERON:0001015,6.27e-08,64;UBERON:0000383,6.27e-08,64;UBERON:0000033,9.95e-08,56;UBERON:0001134,1.75e-07,62;UBERON:0002036,1.75e-07,62;UBERON:0003082,1.75e-07,62;UBERON:0000153,2.92e-07,62;UBERON:0007811,2.92e-07,62;UBERON:0001135,4.37e-07,15;UBERON:0002199,7.48e-07,46;UBERON:0002416,7.48e-07,46;UBERON:0005256,8.01e-07,122 | |||
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| ||
|short_description=p2@LTBP4 | |||
}} | }} |
Latest revision as of 02:36, 18 September 2015
Short description: | p2@LTBP4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_LTBP4_5end |
Coexpression cluster: | C3791_Mesenchymal_Trabecular_Fibroblast_Prostate_Smooth_Nucleus_sacrococcigeal |
Association with transcript: | 20bp_to_ENST00000318809, uc010xvp.1_5end |
EntrezGene: | LTBP4 |
HGNC: | 6717 |
UniProt: | F5GYA5 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 7.37e-14 | 76 |
muscle cell | 8.75e-11 | 55 |
smooth muscle cell | 8.89e-11 | 43 |
smooth muscle myoblast | 8.89e-11 | 43 |
muscle precursor cell | 8.23e-09 | 58 |
myoblast | 8.23e-09 | 58 |
multi-potent skeletal muscle stem cell | 8.23e-09 | 58 |
electrically responsive cell | 3.47e-08 | 61 |
electrically active cell | 3.47e-08 | 61 |
Ontology term | p-value | n |
---|---|---|
surface structure | 6.86e-14 | 99 |
epithelial vesicle | 2.53e-09 | 78 |
multilaminar epithelium | 3.40e-09 | 83 |
somite | 1.01e-08 | 71 |
presomitic mesoderm | 1.01e-08 | 71 |
presumptive segmental plate | 1.01e-08 | 71 |
dermomyotome | 1.01e-08 | 71 |
trunk paraxial mesoderm | 1.01e-08 | 71 |
dense mesenchyme tissue | 2.33e-08 | 73 |
paraxial mesoderm | 3.32e-08 | 72 |
presumptive paraxial mesoderm | 3.32e-08 | 72 |
subdivision of head | 3.63e-08 | 49 |
muscle tissue | 6.27e-08 | 64 |
musculature | 6.27e-08 | 64 |
musculature of body | 6.27e-08 | 64 |
head | 9.95e-08 | 56 |
skeletal muscle tissue | 1.75e-07 | 62 |
striated muscle tissue | 1.75e-07 | 62 |
myotome | 1.75e-07 | 62 |
anterior region of body | 2.92e-07 | 62 |
craniocervical region | 2.92e-07 | 62 |
smooth muscle tissue | 4.37e-07 | 15 |
integument | 7.48e-07 | 46 |
integumental system | 7.48e-07 | 46 |
trunk mesenchyme | 8.01e-07 | 122 |