FFCP PHASE1:Hg19::chr2:176971980..176971995,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3237 | |EntrezGene=3237 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=5134 | |HGNC=5134 | ||
|TSSclassifier=strong | |||
|UniProt=P31277 | |UniProt=P31277 | ||
|association_with_transcript=-18bp_to_ENST00000249504_5end | |association_with_transcript=-18bp_to_ENST00000249504_5end | ||
|cluster_id=chr2:176971980..176971995,+ | |||
|coexpression_cluster_id=C1885 | |||
|description=CAGE_peak_9_at_HOXD11_5end | |description=CAGE_peak_9_at_HOXD11_5end | ||
|id=chr2:176971980..176971995,+ | |id=chr2:176971980..176971995,+ | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0000333;9.33e-22;5!CL:0002553;1.82e-13;1!CL:0002321;1.24e-07;15!CL:1000746;1.63e-07;7!CL:1000612;1.63e-07;7!CL:0000123;2.66e-07;2!CL:0000242;2.66e-07;2!CL:0000650;4.55e-07;2!CL:1000500;4.55e-07;2!CL:1000618;4.55e-07;2!CL:1001318;4.55e-07;2!CL:0002173;4.55e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0002553,1.82e-13,1;CL:1000746,1.47e-07,7;CL:1000612,1.47e-07,7;CL:0000242,2.58e-07,2;CL:0000650,4.42e-07,2;CL:1000500,4.42e-07,2;CL:1000618,4.42e-07,2;CL:1001318,4.42e-07,2;CL:0002173,4.42e-07,2 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:171!8.65e-19!10;DOID:3095!4.23e-10!22;DOID:2994!4.23e-10!22;DOID:0050687!3.39e-08!143;DOID:14566!8.58e-07!239 | |ontology_enrichment_disease=DOID:171!8.65e-19!10;DOID:3095!4.23e-10!22;DOID:2994!4.23e-10!22;DOID:0050687!3.39e-08!143;DOID:14566!8.58e-07!239 | ||
|ontology_enrichment_disease_v019=DOID:171;6.70e-42;10!DOID:3095;6.22e-19;22!DOID:2994;6.22e-19;22!DOID:169;3.04e-18;6!DOID:3193;3.18e-07;2!DOID:962;3.18e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:171,5.62e-42,10;DOID:3095,5.75e-19,22;DOID:2994,5.75e-19,22;DOID:169,2.95e-18,6;DOID:3193,3.28e-07,2;DOID:962,3.28e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0000489!4.40e-08!32;UBERON:0006554!4.64e-08!44;UBERON:0002113!7.11e-08!27;UBERON:0003918!7.11e-08!27;UBERON:0005095!7.11e-08!27;UBERON:0007687!7.11e-08!27;UBERON:0000013!7.72e-08!5;UBERON:0002410!7.72e-08!5;UBERON:0001008!7.83e-08!45 | |ontology_enrichment_uberon=UBERON:0000489!4.40e-08!32;UBERON:0006554!4.64e-08!44;UBERON:0002113!7.11e-08!27;UBERON:0003918!7.11e-08!27;UBERON:0005095!7.11e-08!27;UBERON:0007687!7.11e-08!27;UBERON:0000013!7.72e-08!5;UBERON:0002410!7.72e-08!5;UBERON:0001008!7.83e-08!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;3.77e-27;4!UBERON:0000923;3.77e-27;4!UBERON:0010316;3.77e-27;4!UBERON:0005291;3.77e-27;4!UBERON:0002050;7.28e-22;5!UBERON:0005423;7.28e-22;5!UBERON:0000013;9.33e-22;5!UBERON:0002410;9.33e-22;5!UBERON:0000010;2.27e-12;8!UBERON:0002113;5.64e-08;24!UBERON:0011143;5.64e-08;24!UBERON:0000074;1.63e-07;7!UBERON:0001229;1.63e-07;7!UBERON:0003714;3.18e-07;2!UBERON:0003567;4.55e-07;2!UBERON:0003838;4.55e-07;2!UBERON:0003586;4.55e-07;2!UBERON:0005169;4.55e-07;2!UBERON:0002321;4.55e-07;2!UBERON:0005215;4.55e-07;2!UBERON:0002303;4.55e-07;2!UBERON:0002319;4.55e-07;2 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000013,9.01e-22,5;UBERON:0002410,9.01e-22,5;UBERON:0000010,2.23e-12,8;UBERON:0010532,1.47e-07,7;UBERON:0000074,1.47e-07,7;UBERON:0001229,1.47e-07,7;UBERON:0001230,1.47e-07,7;UBERON:0003220,1.47e-07,7;UBERON:0005749,1.47e-07,7;UBERON:0004199,1.47e-07,7;UBERON:0004209,1.47e-07,7;UBERON:0004198,1.47e-07,7;UBERON:0002113,2.13e-07,26;UBERON:0003918,2.13e-07,26;UBERON:0011143,2.13e-07,26;UBERON:0005095,2.13e-07,26;UBERON:0007687,2.13e-07,26;UBERON:0003714,3.28e-07,2;UBERON:0003567,4.42e-07,2;UBERON:0003838,4.42e-07,2;UBERON:0003586,4.42e-07,2;UBERON:0005169,4.42e-07,2;UBERON:0002321,4.42e-07,2;UBERON:0005215,4.42e-07,2;UBERON:0002303,4.42e-07,2;UBERON:0002319,4.42e-07,2 | |||
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| ||
|short_description=p9@HOXD11 | |short_description=p9@HOXD11 | ||
}} | }} |
Latest revision as of 08:45, 18 September 2015
Short description: | p9@HOXD11 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_HOXD11_5end |
Coexpression cluster: | C1885_neuroectodermal_nonsmall_small_neuroblastoma_embryonic_merkel_hairy |
Association with transcript: | -18bp_to_ENST00000249504_5end |
EntrezGene: | HOXD11 |
HGNC: | 5134 |
UniProt: | P31277 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung fibroblast | 1.82e-13 | 1 |
glomerular cell | 1.47e-07 | 7 |
kidney corpuscule cell | 1.47e-07 | 7 |
Merkel cell | 2.58e-07 | 2 |
mesangial cell | 4.42e-07 | 2 |
kidney interstitial cell | 4.42e-07 | 2 |
juxtaglomerular complex cell | 4.42e-07 | 2 |
renal interstitial pericyte | 4.42e-07 | 2 |
extraglomerular mesangial cell | 4.42e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
sympathetic nervous system | 9.01e-22 | 5 |
autonomic nervous system | 9.01e-22 | 5 |
peripheral nervous system | 2.23e-12 | 8 |
primitive nephron | 1.47e-07 | 7 |
renal glomerulus | 1.47e-07 | 7 |
renal corpuscle | 1.47e-07 | 7 |
glomerular capsule | 1.47e-07 | 7 |
metanephric mesenchyme | 1.47e-07 | 7 |
glomerular tuft | 1.47e-07 | 7 |
S-shaped body | 1.47e-07 | 7 |
renal vesicle | 1.47e-07 | 7 |
comma-shaped body | 1.47e-07 | 7 |
kidney | 2.13e-07 | 26 |
kidney mesenchyme | 2.13e-07 | 26 |
upper urinary tract | 2.13e-07 | 26 |
kidney rudiment | 2.13e-07 | 26 |
kidney field | 2.13e-07 | 26 |
neural tissue | 3.28e-07 | 2 |
abdomen connective tissue | 4.42e-07 | 2 |
abdominal segment connective tissue | 4.42e-07 | 2 |
trunk connective tissue | 4.42e-07 | 2 |
interstitial tissue | 4.42e-07 | 2 |
extraglomerular mesangium | 4.42e-07 | 2 |
kidney interstitium | 4.42e-07 | 2 |
juxtaglomerular apparatus | 4.42e-07 | 2 |
mesangium | 4.42e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
neuroectodermal tumor | 5.62e-42 | 10 |
germ cell and embryonal cancer | 5.75e-19 | 22 |
germ cell cancer | 5.75e-19 | 22 |
neuroendocrine tumor | 2.95e-18 | 6 |
peripheral nerve sheath neoplasm | 3.28e-07 | 2 |
neurofibroma | 3.28e-07 | 2 |