FFCP PHASE1:Hg19::chr15:59904077..59904099,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9245 | |EntrezGene=9245 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4205 | |HGNC=4205 | ||
|TSSclassifier=strong | |||
|UniProt=O95395 | |UniProt=O95395 | ||
|association_with_transcript=94bp_to_ENST00000396065,ENST00000560585_5end | |association_with_transcript=94bp_to_ENST00000396065,ENST00000560585_5end | ||
|cluster_id=chr15:59904077..59904099,+ | |||
|coexpression_cluster_id=C1211 | |||
|description=CAGE_peak_2_at_GCNT3_5end | |description=CAGE_peak_2_at_GCNT3_5end | ||
|id=chr15:59904077..59904099,+ | |id=chr15:59904077..59904099,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.90e-11!254;CL:0000223!4.44e-07!59 | |ontology_enrichment_celltype=CL:0000066!2.90e-11!254;CL:0000223!4.44e-07!59 | ||
|ontology_enrichment_celltype_v019=CL:1000497;1.97e-07;17!CL:0002518;1.97e-07;17!CL:0000182;7.36e-07;12 | |||
|ontology_enrichment_celltype_v019_2=CL:1000497,2.19e-07,17;CL:0002518,2.19e-07,17;CL:0000066,2.75e-07,253;CL:0000223,5.88e-07,58;CL:0000182,7.60e-07,12 | |||
|ontology_enrichment_development_v019=UBERON:0009497;7.34e-14;13!UBERON:0003104;1.45e-11;31!UBERON:0004161;1.78e-11;11!UBERON:0006242;6.96e-07;1 | |||
|ontology_enrichment_disease=DOID:305!3.51e-14!106;DOID:299!2.28e-12!25;DOID:0050687!4.03e-11!143;DOID:14566!5.67e-07!239 | |||
|ontology_enrichment_disease_v019=DOID:299;3.47e-12;25!DOID:4929;1.35e-11;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,3.67e-12,25;DOID:305,6.96e-12,106;DOID:4929,1.67e-11,2;DOID:0050687,7.22e-09,143;DOID:7,2.98e-07,39 | |||
|ontology_enrichment_uberon=UBERON:0004921!1.46e-12!129;UBERON:0004185!1.46e-12!129;UBERON:0004119!6.11e-12!169;UBERON:0000925!6.11e-12!169;UBERON:0006595!6.11e-12!169;UBERON:0001007!1.39e-10!155;UBERON:0001555!1.39e-10!155;UBERON:0007026!1.39e-10!155;UBERON:0005409!2.98e-10!35;UBERON:0000160!1.92e-09!27;UBERON:0000077!2.08e-08!130;UBERON:0006554!3.84e-07!44;UBERON:0001008!6.88e-07!45;UBERON:0001041!8.50e-07!98 | |||
|ontology_enrichment_uberon_v019=UBERON:0005409;9.32e-21;22!UBERON:0000160;2.07e-17;17!UBERON:0002108;2.15e-17;4!UBERON:0004921;1.03e-11;33!UBERON:0002423;2.90e-09;25!UBERON:0002114;6.00e-08;2!UBERON:0002294;1.80e-07;7!UBERON:0001173;1.80e-07;7!UBERON:0002113;3.30e-07;24!UBERON:0011143;3.30e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005409,3.57e-18,25;UBERON:0000160,1.94e-17,17;UBERON:0002108,2.39e-17,4;UBERON:0004921,1.79e-11,118;UBERON:0001007,8.81e-10,145;UBERON:0001555,8.81e-10,145;UBERON:0007026,8.81e-10,145;UBERON:0005172,2.33e-09,54;UBERON:0005173,2.33e-09,54;UBERON:0009497,3.12e-09,25;UBERON:0000015,3.12e-09,25;UBERON:0002423,3.12e-09,25;UBERON:0006235,3.12e-09,25;UBERON:0004161,3.12e-09,25;UBERON:0004119,1.79e-08,160;UBERON:0000925,1.79e-08,160;UBERON:0006595,1.79e-08,160;UBERON:0002417,3.21e-08,60;UBERON:0000916,3.21e-08,60;UBERON:0002114,6.43e-08,2;UBERON:0008835,8.35e-08,22;UBERON:0003894,8.35e-08,22;UBERON:0003929,1.23e-07,54;UBERON:0009854,1.93e-07,23;UBERON:0005177,3.84e-07,101;UBERON:0007499,8.47e-07,25 | |||
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| ||
|short_description=p2@GCNT3 | |short_description=p2@GCNT3 | ||
}} | }} |
Latest revision as of 09:08, 18 September 2015
Short description: | p2@GCNT3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_GCNT3_5end |
Coexpression cluster: | C1211_small_lung_bile_clear_colon_rectal_tubular |
Association with transcript: | 94bp_to_ENST00000396065, ENST00000560585_5end |
EntrezGene: | GCNT3 |
HGNC: | 4205 |
UniProt: | O95395 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
kidney cell | 2.19e-07 | 17 |
kidney epithelial cell | 2.19e-07 | 17 |
epithelial cell | 2.75e-07 | 253 |
endodermal cell | 5.88e-07 | 58 |
hepatocyte | 7.60e-07 | 12 |
Ontology term | p-value | n |
---|---|---|
gastrointestinal system | 3.57e-18 | 25 |
intestine | 1.94e-17 | 17 |
small intestine | 2.39e-17 | 4 |
subdivision of digestive tract | 1.79e-11 | 118 |
digestive system | 8.81e-10 | 145 |
digestive tract | 8.81e-10 | 145 |
primitive gut | 8.81e-10 | 145 |
abdomen element | 2.33e-09 | 54 |
abdominal segment element | 2.33e-09 | 54 |
epithelium of foregut-midgut junction | 3.12e-09 | 25 |
anatomical boundary | 3.12e-09 | 25 |
hepatobiliary system | 3.12e-09 | 25 |
foregut-midgut junction | 3.12e-09 | 25 |
septum transversum | 3.12e-09 | 25 |
endoderm-derived structure | 1.79e-08 | 160 |
endoderm | 1.79e-08 | 160 |
presumptive endoderm | 1.79e-08 | 160 |
abdominal segment of trunk | 3.21e-08 | 60 |
abdomen | 3.21e-08 | 60 |
duodenum | 6.43e-08 | 2 |
hepatic diverticulum | 8.35e-08 | 22 |
liver primordium | 8.35e-08 | 22 |
gut epithelium | 1.23e-07 | 54 |
digestive tract diverticulum | 1.93e-07 | 23 |
trunk region element | 3.84e-07 | 101 |
epithelial sac | 8.47e-07 | 25 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 3.67e-12 | 25 |
carcinoma | 6.96e-12 | 106 |
tubular adenocarcinoma | 1.67e-11 | 2 |
cell type cancer | 7.22e-09 | 143 |
disease of anatomical entity | 2.98e-07 | 39 |