FFCP PHASE2:Hg19::chr1:170633262..170633285,+: Difference between revisions
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(Created page with "{{FFCP |DHSsupport=supported |DPIdataset=robust |EntrezGene=entrezgene:5396 |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding |HGNC=HGNC:9142 |TSSclass...") |
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|DHSsupport=supported | |DHSsupport=supported | ||
|DPIdataset=robust | |DPIdataset=robust | ||
|EntrezGene= | |EntrezGene=5396 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | ||
|HGNC= | |HGNC=9142 | ||
|TSSclassifier=strong | |TSSclassifier=strong | ||
|UniProt= | |UniProt=P54821 | ||
|association_with_transcript=-27bp_to_NM_006902,NM_022716,uc001ghe.2,uc001ghf.2_5end | |association_with_transcript=-27bp_to_NM_006902,NM_022716,uc001ghe.2,uc001ghf.2_5end | ||
|cluster_id=chr1:170633262..170633285,+ | |cluster_id=chr1:170633262..170633285,+ |
Latest revision as of 14:26, 18 September 2015
Short description: | p3@PRRX1 |
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Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_PRRX1_5end |
Coexpression cluster: | C851_Fibroblast_mesenchymal_Myoblast_normal_Olfactory_skeletal_Osteoblast |
Association with transcript: | -27bp_to_NM_006902, NM_022716, uc001ghe.2, uc001ghf.2_5end |
EntrezGene: | PRRX1 |
HGNC: | 9142 |
UniProt: | P54821 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
Sample | p3@PRRX1 |
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- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
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fibroblast | 6.30e-24 | 76 |
muscle precursor cell | 4.73e-18 | 58 |
myoblast | 4.73e-18 | 58 |
multi-potent skeletal muscle stem cell | 4.73e-18 | 58 |
muscle cell | 4.99e-17 | 55 |
electrically responsive cell | 7.76e-15 | 61 |
electrically active cell | 7.76e-15 | 61 |
smooth muscle cell | 1.98e-12 | 43 |
smooth muscle myoblast | 1.98e-12 | 43 |
vascular associated smooth muscle cell | 3.02e-12 | 32 |
Showing 1 to 10 of 18 entries
Ontology term | p-value | n |
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dense mesenchyme tissue | 2.25e-27 | 73 |
paraxial mesoderm | 1.29e-26 | 72 |
presumptive paraxial mesoderm | 1.29e-26 | 72 |
somite | 1.56e-26 | 71 |
presomitic mesoderm | 1.56e-26 | 71 |
presumptive segmental plate | 1.56e-26 | 71 |
dermomyotome | 1.56e-26 | 71 |
trunk paraxial mesoderm | 1.56e-26 | 71 |
epithelial vesicle | 9.55e-22 | 78 |
multilaminar epithelium | 1.45e-21 | 83 |
Showing 1 to 10 of 58 entries