FFCP PHASE1:Hg19::chr5:73109145..73109156,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=64283 | |EntrezGene=64283 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC= | |HGNC= | ||
|TSSclassifier=strong | |||
|UniProt=B5MDA3 | |UniProt=B5MDA3 | ||
|association_with_transcript=-186bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end | |association_with_transcript=-186bp_to_ENST00000296799,NM_001244364,uc011csr.1_5end | ||
|cluster_id=chr5:73109145..73109156,+ | |||
|coexpression_cluster_id=C55 | |||
|description=CAGE_peak_8_at_RGNEF_5end | |description=CAGE_peak_8_at_RGNEF_5end | ||
|id=chr5:73109145..73109156,+ | |id=chr5:73109145..73109156,+ | ||
|ontology_enrichment_celltype=CL:1000497!8.09e-10!18;CL:0002518!8.09e-10!18;CL:0000223!1.27e-09!59;CL:0000066!2.36e-07!254;CL:0000181!7.72e-07!12;CL:0000417!7.72e-07!12;CL:0000668!7.72e-07!12;CL:0000414!7.72e-07!12;CL:0000412!7.72e-07!12;CL:0000182!7.72e-07!12 | |ontology_enrichment_celltype=CL:1000497!8.09e-10!18;CL:0002518!8.09e-10!18;CL:0000223!1.27e-09!59;CL:0000066!2.36e-07!254;CL:0000181!7.72e-07!12;CL:0000417!7.72e-07!12;CL:0000668!7.72e-07!12;CL:0000414!7.72e-07!12;CL:0000412!7.72e-07!12;CL:0000182!7.72e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;5.55e-27;12!CL:0002563;1.28e-20;4!CL:0002535;2.35e-11;2!CL:0002253;3.52e-11;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,5.93e-27,12;CL:0002563,1.56e-20,4;CL:0000223,2.91e-12,58;CL:0002535,2.47e-11,2;CL:0002253,3.35e-11,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;3.56e-45;11!UBERON:0009497;2.75e-38;13!UBERON:0001041;9.25e-24;30!UBERON:0003104;4.74e-23;31!CL:0000223;3.39e-07;58 | |||
|ontology_enrichment_disease=DOID:120!1.05e-07!27;DOID:2394!2.83e-07!14;DOID:193!4.66e-07!29 | |||
|ontology_enrichment_disease_v019=DOID:7;4.30e-08;39 | |||
|ontology_enrichment_disease_v019_2=DOID:305,5.60e-09,106;DOID:7,1.43e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0005172!4.42e-14!55;UBERON:0005173!4.42e-14!55;UBERON:0002417!9.20e-14!61;UBERON:0000916!9.20e-14!61;UBERON:0009569!9.30e-12!113;UBERON:0002113!2.26e-11!27;UBERON:0003918!2.26e-11!27;UBERON:0005095!2.26e-11!27;UBERON:0007687!2.26e-11!27;UBERON:0005177!1.65e-10!107;UBERON:0000466!6.36e-10!126;UBERON:0000489!3.15e-09!32;UBERON:0007499!4.00e-09!25;UBERON:0009856!1.06e-08!26;UBERON:0008835!1.77e-08!22;UBERON:0003894!1.77e-08!22;UBERON:0009854!4.81e-08!23;UBERON:0002107!9.63e-08!19;UBERON:0006925!9.63e-08!19;UBERON:0008836!9.63e-08!19;UBERON:0006554!2.15e-07!44;UBERON:0009497!2.79e-07!25;UBERON:0000015!2.79e-07!25;UBERON:0002423!2.79e-07!25;UBERON:0006235!2.79e-07!25;UBERON:0004161!2.79e-07!25;UBERON:0001008!3.57e-07!45 | |ontology_enrichment_uberon=UBERON:0005172!4.42e-14!55;UBERON:0005173!4.42e-14!55;UBERON:0002417!9.20e-14!61;UBERON:0000916!9.20e-14!61;UBERON:0009569!9.30e-12!113;UBERON:0002113!2.26e-11!27;UBERON:0003918!2.26e-11!27;UBERON:0005095!2.26e-11!27;UBERON:0007687!2.26e-11!27;UBERON:0005177!1.65e-10!107;UBERON:0000466!6.36e-10!126;UBERON:0000489!3.15e-09!32;UBERON:0007499!4.00e-09!25;UBERON:0009856!1.06e-08!26;UBERON:0008835!1.77e-08!22;UBERON:0003894!1.77e-08!22;UBERON:0009854!4.81e-08!23;UBERON:0002107!9.63e-08!19;UBERON:0006925!9.63e-08!19;UBERON:0008836!9.63e-08!19;UBERON:0006554!2.15e-07!44;UBERON:0009497!2.79e-07!25;UBERON:0000015!2.79e-07!25;UBERON:0002423!2.79e-07!25;UBERON:0006235!2.79e-07!25;UBERON:0004161!2.79e-07!25;UBERON:0001008!3.57e-07!45 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;2.65e-26;19!UBERON:0006925;2.65e-26;19!UBERON:0001242;1.28e-20;4!UBERON:0001262;1.28e-20;4!UBERON:0004786;1.28e-20;4!UBERON:0004808;1.28e-20;4!UBERON:0001277;1.28e-20;4!UBERON:0002423;4.69e-20;25!UBERON:0002365;5.00e-15;31!UBERON:0002330;5.00e-15;31!UBERON:0002368;1.87e-14;33!UBERON:0000485;3.15e-12;7!UBERON:0003929;3.15e-12;7!UBERON:0006955;2.35e-11;2!UBERON:0004801;2.35e-11;2!UBERON:0003350;8.06e-11;8!UBERON:0000949;1.59e-09;43!UBERON:0002417;3.00e-08;58!UBERON:0000916;3.00e-08;58!UBERON:0005172;9.33e-08;52!UBERON:0005173;9.33e-08;52 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,2.58e-26,19;UBERON:0006925,2.58e-26,19;UBERON:0008836,2.58e-26,19;UBERON:0008835,9.15e-23,22;UBERON:0003894,9.15e-23,22;UBERON:0009854,8.70e-22,23;UBERON:0001242,1.56e-20,4;UBERON:0001262,1.56e-20,4;UBERON:0004786,1.56e-20,4;UBERON:0004808,1.56e-20,4;UBERON:0001277,1.56e-20,4;UBERON:0007499,4.60e-20,25;UBERON:0009497,4.60e-20,25;UBERON:0000015,4.60e-20,25;UBERON:0002423,4.60e-20,25;UBERON:0006235,4.60e-20,25;UBERON:0004161,4.60e-20,25;UBERON:0009856,2.66e-19,26;UBERON:0003929,8.98e-18,54;UBERON:0002365,3.19e-16,31;UBERON:0002330,3.19e-16,31;UBERON:0005911,3.76e-15,82;UBERON:0002368,2.17e-14,35;UBERON:0005172,3.33e-13,54;UBERON:0005173,3.33e-13,54;UBERON:0002417,7.07e-12,60;UBERON:0000916,7.07e-12,60;UBERON:0006955,2.47e-11,2;UBERON:0004801,2.47e-11,2;UBERON:0000949,3.18e-11,45;UBERON:0003350,8.90e-11,8;UBERON:0004921,2.50e-10,118;UBERON:0000485,1.10e-09,9;UBERON:0005177,2.03e-09,101;UBERON:0002530,1.40e-08,59;UBERON:0009569,1.83e-08,112;UBERON:0001007,2.45e-08,145;UBERON:0001555,2.45e-08,145;UBERON:0007026,2.45e-08,145;UBERON:0001041,3.58e-08,87;UBERON:0004119,1.62e-07,160;UBERON:0000925,1.62e-07,160;UBERON:0006595,1.62e-07,160 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,1.10689594688802,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0.451199612907412,0.847168708148562,0,0,1.26661954671451,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26739473068848,0.102268682502155,0,0,0,0.895105873378046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,1.27217764290547,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,2.91497774536727,3.21421847686549,3.30277364885506,0.78741985211799,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,1.36869470307464,0,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0.318593534327405,0,0.155262956876259,0,0,0,0.150257608997218,0.761610424337591,0,0.181848659202559,0,0.928067519756987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609589624911347,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269475606319761,0,0.122241444182866,0,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0,0,0,0,0,0,0,0,0,0,0,0,0.286235987131057,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.169560592310488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,0,0,0,0,0,1.10689594688802,0,0,0,0,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0.16798212819886,0,0.0895585227028483,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.508189248444927,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.160853921143607,0,0,0,0,0,0,0.604297247958111,0,0,0,0,0,0.451199612907412,0.847168708148562,0,0,1.26661954671451,0,0.170093705276516,0.215915916102139,0,0,0,0.254876273045038,0,0,0,0,0,0,0,0,0,0,0,0,0,0.096670718292122,0,0,0,0,0,0,0,0.165284915360978,0.192190067365106,0.127612712494584,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0,0,0,0.551365343546124,0,0,0,0,0,0,0,0,0,0.35667105148125,0,0,0,0,0,0.0962221127255121,0,0,0.0941438007767792,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.26739473068848,0.102268682502155,0,0,0,0.895105873378046,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0769502585037971,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.652931232636591,1.27217764290547,0,0,0.176915129006678,0,0,0,0,0,0,0,0,0,0,0,0,0,0.063186579628488,0.150323419414493,0,0,0,0,0,0.284609546029793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.171594997861965,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.16495949527454,2.91497774536727,3.21421847686549,3.30277364885506,0.78741985211799,0,0,0,0,0,0,0,0,0,0,0.157611414598396,0.209818352539992,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.32506888912221,0,0,1.36869470307464,0,0.106787412567695,0,0,0,0,0,0.638341257770182,0,0,0,0,0,0,0,0,0,0,0.0620964029413835,0,0,0,0,0,0,0,0,0,0,0,0.251567901752575,0,0,0,0,0,0.318593534327405,0,0.155262956876259,0,0,0,0.150257608997218,0.761610424337591,0,0.181848659202559,0,0.928067519756987,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.192914038270915,0,0.256241518587947,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.139879507719444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.115525666150338,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.609589624911347,0,0,0,0,0,0,0,0,0,0,0.231522474323834,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.5290268405154,0,0,0,0,0,0,0,0,0,0,0.0757786982182394,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.269475606319761,0,0.122241444182866,0,0,0,0 | ||
|short_description=p8@RGNEF | |short_description=p8@RGNEF | ||
}} | }} |
Latest revision as of 16:13, 18 September 2015
Short description: | p8@RGNEF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_RGNEF_5end |
Coexpression cluster: | C55_hepatocellular_Intestinal_liver_Prostate_fibrosarcoma_Hepatocyte_hepatoblastoma |
Association with transcript: | -186bp_to_ENST00000296799, NM_001244364, uc011csr.1_5end |
EntrezGene: | RGNEF |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 5.93e-27 | 12 |
intestinal epithelial cell | 1.56e-20 | 4 |
endodermal cell | 2.91e-12 | 58 |
epithelial cell of cervix | 2.47e-11 | 2 |
epithelial cell of large intestine | 3.35e-11 | 2 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 5.60e-09 | 106 |
disease of anatomical entity | 1.43e-08 | 39 |