FFCP PHASE1:Hg19::chr19:45996465..45996523,-: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6253 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10468 | |||
|TSSclassifier=strong | |||
|UniProt=O75298,Q7RTM9 | |||
|association_with_transcript=0bp_to_ENST00000430715,NM_206901_5end | |||
|cluster_id=chr19:45996465..45996523,- | |||
|coexpression_cluster_id=C31 | |||
|description=CAGE_peak_1_at_RTN2_5end | |||
|id=chr19:45996465..45996523,- | |||
|ontology_enrichment_celltype=CL:0000183!1.65e-10!59;CL:0000680!4.04e-10!57;CL:0000056!4.04e-10!57;CL:0000355!4.04e-10!57;CL:0000055!4.38e-10!180;CL:0000187!5.73e-09!54;CL:0000393!2.62e-07!60;CL:0000211!2.62e-07!60 | |||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000680,3.56e-10,58;CL:0000056,3.56e-10,58;CL:0000355,3.56e-10,58;CL:0000187,5.12e-09,55;CL:0000393,2.34e-07,61;CL:0000211,2.34e-07,61;CL:0000222,4.02e-07,121 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002385!3.00e-12!63;UBERON:0001015!3.00e-12!63;UBERON:0000383!3.00e-12!63;UBERON:0001134!3.31e-12!61;UBERON:0002036!3.31e-12!61;UBERON:0003082!3.31e-12!61;UBERON:0002100!3.59e-12!216;UBERON:0004290!3.62e-12!70;UBERON:0003104!6.27e-12!238;UBERON:0009142!6.27e-12!238;UBERON:0000914!6.99e-12!83;UBERON:0002329!6.99e-12!83;UBERON:0003077!6.99e-12!83;UBERON:0003059!6.99e-12!83;UBERON:0007282!6.99e-12!83;UBERON:0009618!6.99e-12!83;UBERON:0007285!6.99e-12!83;UBERON:0000486!3.28e-11!82;UBERON:0000926!5.43e-11!448;UBERON:0004120!5.43e-11!448;UBERON:0006603!5.43e-11!448;UBERON:0005256!3.70e-10!143;UBERON:0001009!6.15e-10!113;UBERON:0004872!1.44e-09!84;UBERON:0004535!6.80e-09!110;UBERON:0000490!1.41e-08!138;UBERON:0000481!1.18e-07!347;UBERON:0002049!1.53e-07!79;UBERON:0007798!1.53e-07!79;UBERON:0000468!2.40e-07!659;UBERON:0003914!2.74e-07!118 | |||
|ontology_enrichment_uberon_v019=UBERON:0002385;1.88e-07;31!UBERON:0001015;1.88e-07;31!UBERON:0000383;1.88e-07;31!UBERON:0001134;8.36e-07;16!UBERON:0002036;8.36e-07;16 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007503,3.60e-14,78;UBERON:0002100,2.02e-12,199;UBERON:0002385,2.55e-12,64;UBERON:0001015,2.55e-12,64;UBERON:0000383,2.55e-12,64;UBERON:0001134,2.84e-12,62;UBERON:0002036,2.84e-12,62;UBERON:0003082,2.84e-12,62;UBERON:0002329,3.00e-12,71;UBERON:0003059,3.00e-12,71;UBERON:0007282,3.00e-12,71;UBERON:0004290,3.00e-12,71;UBERON:0009618,3.00e-12,71;UBERON:0007524,3.65e-12,73;UBERON:0003077,6.52e-12,72;UBERON:0007285,6.52e-12,72;UBERON:0003104,7.86e-12,160;UBERON:0009142,7.86e-12,160;UBERON:0000486,2.30e-11,83;UBERON:0005256,1.31e-10,122;UBERON:0001009,1.81e-09,112;UBERON:0004872,2.49e-09,83;UBERON:0000490,3.61e-09,148;UBERON:0000926,9.33e-09,315;UBERON:0004120,9.33e-09,315;UBERON:0006603,9.33e-09,315;UBERON:0004535,1.94e-08,109;UBERON:0003914,2.28e-07,117;UBERON:0002049,2.62e-07,78;UBERON:0007798,2.62e-07,78 | |||
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| |||
|short_description=p1@RTN2 | |||
}} |
Latest revision as of 18:15, 18 September 2015
Short description: | p1@RTN2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RTN2_5end |
Coexpression cluster: | C31_skeletal_tongue_diaphragm_throat_penis_skin_trachea |
Association with transcript: | 0bp_to_ENST00000430715, NM_206901_5end |
EntrezGene: | RTN2 |
HGNC: | 10468 |
UniProt: | O75298Q7RTM9 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
muscle precursor cell | 3.56e-10 | 58 |
myoblast | 3.56e-10 | 58 |
multi-potent skeletal muscle stem cell | 3.56e-10 | 58 |
muscle cell | 5.12e-09 | 55 |
electrically responsive cell | 2.34e-07 | 61 |
electrically active cell | 2.34e-07 | 61 |
mesodermal cell | 4.02e-07 | 121 |
Ontology term | p-value | n |
---|---|---|
epithelial vesicle | 3.60e-14 | 78 |
trunk | 2.02e-12 | 199 |
muscle tissue | 2.55e-12 | 64 |
musculature | 2.55e-12 | 64 |
musculature of body | 2.55e-12 | 64 |
skeletal muscle tissue | 2.84e-12 | 62 |
striated muscle tissue | 2.84e-12 | 62 |
myotome | 2.84e-12 | 62 |
somite | 3.00e-12 | 71 |
presomitic mesoderm | 3.00e-12 | 71 |
presumptive segmental plate | 3.00e-12 | 71 |
dermomyotome | 3.00e-12 | 71 |
trunk paraxial mesoderm | 3.00e-12 | 71 |
dense mesenchyme tissue | 3.65e-12 | 73 |
paraxial mesoderm | 6.52e-12 | 72 |
presumptive paraxial mesoderm | 6.52e-12 | 72 |
mesenchyme | 7.86e-12 | 160 |
entire embryonic mesenchyme | 7.86e-12 | 160 |
multilaminar epithelium | 2.30e-11 | 83 |
trunk mesenchyme | 1.31e-10 | 122 |
circulatory system | 1.81e-09 | 112 |
splanchnic layer of lateral plate mesoderm | 2.49e-09 | 83 |
unilaminar epithelium | 3.61e-09 | 148 |
mesoderm | 9.33e-09 | 315 |
mesoderm-derived structure | 9.33e-09 | 315 |
presumptive mesoderm | 9.33e-09 | 315 |
cardiovascular system | 1.94e-08 | 109 |
epithelial tube | 2.28e-07 | 117 |
vasculature | 2.62e-07 | 78 |
vascular system | 2.62e-07 | 78 |