FFCP PHASE1:Hg19::chr6:42016288..42016297,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:42016288..42016297,-
|short_description=p12@CCND3
|description=CAGE_peak_12_at_CCND3_5end
|association_with_transcript=116bp_to_ENST00000505672_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=896 | |EntrezGene=896 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=1585 | |HGNC=1585 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=116bp_to_ENST00000505672_5end | |||
|cluster_id=chr6:42016288..42016297,- | |||
|description=CAGE_peak_12_at_CCND3_5end | |||
|id=chr6:42016288..42016297,- | |||
|ontology_enrichment_celltype=CL:0000791!7.38e-17!18;CL:0000789!7.38e-17!18;CL:0002420!7.38e-17!18;CL:0002419!7.38e-17!18;CL:0000790!7.38e-17!18;CL:0000084!1.97e-13!25;CL:0000827!1.97e-13!25;CL:0000838!8.15e-13!52;CL:0000542!2.16e-12!53;CL:0000051!2.16e-12!53;CL:0000625!1.62e-11!11;CL:0000624!2.38e-08!6;CL:0000738!4.22e-07!140 | |||
|ontology_enrichment_celltype_v019=CL:0000791;3.37e-16;18!CL:0000789;3.37e-16;18!CL:0002419;3.37e-16;18!CL:0000624;4.38e-13;6!CL:0000898;4.44e-12;3!CL:0000084;1.53e-11;25!CL:0000895;1.10e-09;1!CL:0000542;4.11e-08;53!CL:0000625;2.30e-07;11 | |||
|ontology_enrichment_celltype_v019_2=CL:0000791,1.81e-16,18;CL:0000789,1.81e-16,18;CL:0002420,1.81e-16,18;CL:0002419,1.81e-16,18;CL:0000790,1.81e-16,18;CL:0000624,2.12e-13,6;CL:0000898,1.92e-12,3;CL:0000084,9.90e-12,25;CL:0000827,9.90e-12,25;CL:0000810,7.50e-10,1;CL:0000895,7.50e-10,1;CL:0002436,7.50e-10,1;CL:0002427,7.50e-10,1;CL:0002428,7.50e-10,1;CL:0002429,7.50e-10,1;CL:0002433,7.50e-10,1;CL:0002431,7.50e-10,1;CL:0002432,7.50e-10,1;CL:0000838,2.50e-09,52;CL:0000542,3.92e-09,53;CL:0000051,3.92e-09,53;CL:0000625,2.04e-07,11 | |||
|ontology_enrichment_development_v019=CL:0000790;3.37e-16;18!CL:0002427;1.10e-09;1!CL:0000051;4.11e-08;53 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007023!4.29e-08!115 | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;1.10e-09;1!UBERON:0002171;1.10e-09;1!UBERON:0006518;1.10e-09;1!UBERON:0008949;1.10e-09;1!UBERON:0000101;1.10e-09;1!UBERON:0002167;1.10e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002171,1.62e-09,1;UBERON:0006518,1.62e-09,1;UBERON:0008949,1.62e-09,1;UBERON:0000101,1.62e-09,1;UBERON:0002167,1.62e-09,1;UBERON:0002370,1.69e-09,4;UBERON:0005058,1.69e-09,4;UBERON:0009113,1.69e-09,4;UBERON:0003295,1.69e-09,4;UBERON:0005562,1.69e-09,4;UBERON:0007195,1.91e-09,1 | |||
|phase1_expression=0,0.214100523890983,0,0,0,0.872338524100369,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0.0774672005803016,0,0,0,0,0,0.223915474239924,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0,0.112328631146495,0.150176892841506,0,0.570025487482497,0,0,0,0.546138611262131,1.77901850772711,0.426730222566507,0.400395987036012,0,0.661044872784862,0,0.569212969109448,0,1.14681968437569,0,0,0,0.590129310341499,0.393010762749165,1.43921049299656,0.668745981562712,1.95553359980154,0.473447805734733,0,0.222820913770347,0.589211814949674,0.221533894583621,0,0.128091319725675,0.130059347559878,0.328875809207352,0.552700035571697,0.289803085735052,1.03800594213442,1.60524496853828,4.18142095219907,0.113309342697566,1.53288197440768,1.37450978193052,1.01207876807801,0.95569624297229,1.30216690771284,0.950452044448374,0.752875595388864,0.511946444617674,1.24930726552346,0,0.821127996921047,0.604820229674197,1.87208137048455,0.724122019413995,0,0,0,0,0,0,0.795285947051099,0,0.378139268656271,0.443458794925128,0.43917392846563,0.196468613246569,0,0.370784442784429,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370353780634118,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,1.24396869324463,0.144119953416961,0.75745460055828,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0.431255149719035,0.256686072559497,0,0,0,0,0,0,2.99161459204025,0,0.36807447515742,0.500170521059677,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0.979005787313703,1.02943027143257,0.413536052245775,1.07857100409308,0.853820462427555,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0.349934720244983,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0.764637207142375,1.70894156152249,0.476463550915578,0,0,0,0,0,0,0,0,0,0.284567373393656,0,0,0.191505370132367,0.635020748171649,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0.23874448473769,0,0,0,0,0,0,0,0.597743964753209,0.276283915531148,0,0,0,0,0,0,0,0.493217028184668,0,1.11136990144637,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,1.52581736317083,0.110579259931225,0.295547618953547,0,0,0,0.230850775511391,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0.134802265961354,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.126621591911757,0,0,0.426905989478705,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.104909176269996,0.105600336519406,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.258565912723101,0,0,0,0.320362237703084,0.471612915298998,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0.157723490002507,0,0,0,0,1.41696576325585,0.159633859057151,0.615349092722265,0,0.0691572524642179,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0.781514011233092,0,0,0,0.202612753855184,0,0,0,0,0.548257766857182,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.214429632529969,0,0,0,0,0.414432328326074,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0.187967835959707,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0,0,0,1.74390056557216,0.931120714437869,0,0.190941474834495,0,0,0,0,0.286888821570705,0.665320713092027,0,0,0,0,0,0.366724332548599,0,0,0.805095174364105,0 | |phase1_expression=0,0.214100523890983,0,0,0,0.872338524100369,0,0,0,0,0,0.218441372130172,0,0.123766352960047,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.393364276848904,0.383829398097213,0.309632246632152,0,0,0,0.0774672005803016,0,0,0,0,0,0.223915474239924,0,0.257575567634187,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0.211255286311942,0.212604299965044,0,0.112328631146495,0.150176892841506,0,0.570025487482497,0,0,0,0.546138611262131,1.77901850772711,0.426730222566507,0.400395987036012,0,0.661044872784862,0,0.569212969109448,0,1.14681968437569,0,0,0,0.590129310341499,0.393010762749165,1.43921049299656,0.668745981562712,1.95553359980154,0.473447805734733,0,0.222820913770347,0.589211814949674,0.221533894583621,0,0.128091319725675,0.130059347559878,0.328875809207352,0.552700035571697,0.289803085735052,1.03800594213442,1.60524496853828,4.18142095219907,0.113309342697566,1.53288197440768,1.37450978193052,1.01207876807801,0.95569624297229,1.30216690771284,0.950452044448374,0.752875595388864,0.511946444617674,1.24930726552346,0,0.821127996921047,0.604820229674197,1.87208137048455,0.724122019413995,0,0,0,0,0,0,0.795285947051099,0,0.378139268656271,0.443458794925128,0.43917392846563,0.196468613246569,0,0.370784442784429,0,0,0.132957960518865,0.238490624305342,0,0,0,0,0,0,0,0,0,0,0,0,0.402829317109147,0,0.24406205754817,0,0,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.49333509683432,0,0.134710672069688,0.163461903113459,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0.103325781175765,0,0,0,0,0.168336113954066,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370353780634118,0.325808305310325,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0895585227028483,0.290633938513962,0,0,0,1.24396869324463,0.144119953416961,0.75745460055828,0,0,0,0,0,0,0,0,0,0.07333828582095,0,0,0,0,0,0,1.41849132023278,0.266422179016099,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.205476322550383,0,0,0.197030760201927,0.431255149719035,0.256686072559497,0,0,0,0,0,0,2.99161459204025,0,0.36807447515742,0.500170521059677,0.542530047399471,0,0,0,0,0,0,0,0,0,0,0.979005787313703,1.02943027143257,0.413536052245775,1.07857100409308,0.853820462427555,0,0,0,0,0,0,0.128139149255701,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0,0,0,0,0,0,0,0,0,0,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.137836572484531,0,0.290033387828457,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0,0,0,0,0,0.243713489631284,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0,0,0,0,0,0,0.349934720244983,0,0.670302275535787,0,0.0941438007767792,0,0,0,0,0,0.764637207142375,1.70894156152249,0.476463550915578,0,0,0,0,0,0,0,0,0,0.284567373393656,0,0,0.191505370132367,0.635020748171649,0,0,0,0,0,0,0.1605880751037,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146508179271894,0,0,0.284136146806413,0.23874448473769,0,0,0,0,0,0,0,0.597743964753209,0.276283915531148,0,0,0,0,0,0,0,0.493217028184668,0,1.11136990144637,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0,0.120596438625408,1.52581736317083,0.110579259931225,0.295547618953547,0,0,0,0.230850775511391,0,0,0,0,0,0,0.533034776018635,0,0,0,0,0,0,0,0,0,0,0,0,0.995261931078505,0.0884575645033392,0,0,0,0,0.134802265961354,0,0.468528891450678,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.126621591911757,0,0,0.426905989478705,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0,0,0,0.134366944973453,0,0,0,0,0,0,0,0,0.272406812223151,0,0,0,0,0,0.0607495566580247,0,0.0788057072991982,0.104909176269996,0.105600336519406,0,0,0,0,0,0,0,0,0,0.082092520749339,0,0,0,0,0.258565912723101,0,0,0,0.320362237703084,0.471612915298998,1.24271716604159,0,0,0,0,0,0,0,0,0,0,0.488105059607853,0,0,0,0,0,0,0,0,0.235265819698172,0,0,0,0,0,0,0,0,0,0,0.15543720058278,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.214441591374926,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.163565394255844,0,0,0,0,0,0,0,0,0,0,0,0,0.157265941855896,0,0,0.212574920101683,0.123935764259002,0,0,0.157723490002507,0,0,0,0,1.41696576325585,0.159633859057151,0.615349092722265,0,0.0691572524642179,0,0,0,0,0,0.231051332300676,0,0,0,0,0,0.781514011233092,0,0,0,0.202612753855184,0,0,0,0,0.548257766857182,0,0,0.127762427639595,0,0,0,0,0,0,0.171488009437418,0.0679697329768317,0.0657727735628491,0,0,0.078493092850514,0,0,0,0,0,0.214429632529969,0,0,0,0,0.414432328326074,0,0,0,0,0,0.423387050190929,0,0,0,0,0,0,0,0,0,0,0,0,0.118920090777569,0,0,0,0,0,0,0.245148321753905,0,0,0,0.4226557275834,0,0.187967835959707,0.193373663920732,0,0,0,0,0,0.458729283404541,0,0,0.0679914901909147,0,0.5290268405154,0,0,0,0,0,0,0,0,0.18378979906969,0,0,0,0,0,0,0,1.74390056557216,0.931120714437869,0,0.190941474834495,0,0,0,0,0.286888821570705,0.665320713092027,0,0,0,0,0,0.366724332548599,0,0,0.805095174364105,0 | ||
|short_description=p12@CCND3 | |||
}} | }} |
Latest revision as of 19:31, 18 September 2015
Short description: | p12@CCND3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_12_at_CCND3_5end |
Coexpression cluster: | NA |
Association with transcript: | 116bp_to_ENST00000505672_5end |
EntrezGene: | CCND3 |
HGNC: | 1585 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mature alpha-beta T cell | 1.81e-16 | 18 |
alpha-beta T cell | 1.81e-16 | 18 |
immature T cell | 1.81e-16 | 18 |
mature T cell | 1.81e-16 | 18 |
immature alpha-beta T cell | 1.81e-16 | 18 |
CD4-positive, alpha-beta T cell | 2.12e-13 | 6 |
naive T cell | 1.92e-12 | 3 |
T cell | 9.90e-12 | 25 |
pro-T cell | 9.90e-12 | 25 |
CD4-positive, alpha-beta thymocyte | 7.50e-10 | 1 |
naive thymus-derived CD4-positive, alpha-beta T cell | 7.50e-10 | 1 |
mature CD4 single-positive thymocyte | 7.50e-10 | 1 |
resting double-positive thymocyte | 7.50e-10 | 1 |
double-positive blast | 7.50e-10 | 1 |
CD69-positive double-positive thymocyte | 7.50e-10 | 1 |
CD69-positive, CD4-positive single-positive thymocyte | 7.50e-10 | 1 |
CD4-positive, CD8-intermediate double-positive thymocyte | 7.50e-10 | 1 |
CD24-positive, CD4 single-positive thymocyte | 7.50e-10 | 1 |
lymphoid lineage restricted progenitor cell | 2.50e-09 | 52 |
lymphocyte | 3.92e-09 | 53 |
common lymphoid progenitor | 3.92e-09 | 53 |
CD8-positive, alpha-beta T cell | 2.04e-07 | 11 |
Ontology term | p-value | n |
---|---|---|
lower lobe of right lung | 1.62e-09 | 1 |
right lung lobe | 1.62e-09 | 1 |
lower lobe of lung | 1.62e-09 | 1 |
lobe of lung | 1.62e-09 | 1 |
right lung | 1.62e-09 | 1 |
thymus | 1.69e-09 | 4 |
hemolymphoid system gland | 1.69e-09 | 4 |
thymic region | 1.69e-09 | 4 |
pharyngeal gland | 1.69e-09 | 4 |
thymus primordium | 1.69e-09 | 4 |
stroma of bone marrow | 1.91e-09 | 1 |