FFCP PHASE1:Hg19::chr12:52056565..52056580,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6334 | |EntrezGene=6334 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10596 | |HGNC=10596 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQD0 | |UniProt=Q9UQD0 | ||
|association_with_transcript=17bp_to_ENST00000545061,NM_001177984_5end | |association_with_transcript=17bp_to_ENST00000545061,NM_001177984_5end | ||
|cluster_id=chr12:52056565..52056580,+ | |||
|coexpression_cluster_id=C5 | |||
|description=CAGE_peak_8_at_SCN8A_5end | |description=CAGE_peak_8_at_SCN8A_5end | ||
|id=chr12:52056565..52056580,+ | |id=chr12:52056565..52056580,+ | ||
|ontology_enrichment_celltype=CL:0000181!1.30e-09!12;CL:0000417!1.30e-09!12;CL:0000668!1.30e-09!12;CL:0000414!1.30e-09!12;CL:0000412!1.30e-09!12;CL:0000182!1.30e-09!12 | |ontology_enrichment_celltype=CL:0000181!1.30e-09!12;CL:0000417!1.30e-09!12;CL:0000668!1.30e-09!12;CL:0000414!1.30e-09!12;CL:0000412!1.30e-09!12;CL:0000182!1.30e-09!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.15e-14;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.45e-14,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.55e-15;11!UBERON:0009497;4.56e-13;13!UBERON:0006215;2.71e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!5.15e-22!57;UBERON:0005068!5.15e-22!57;UBERON:0006241!5.15e-22!57;UBERON:0007135!5.15e-22!57;UBERON:0007023!1.11e-21!115;UBERON:0002616!5.03e-19!59;UBERON:0000955!5.98e-19!69;UBERON:0006238!5.98e-19!69;UBERON:0005743!2.95e-17!86;UBERON:0001017!1.11e-16!82;UBERON:0000073!4.51e-15!94;UBERON:0001016!4.51e-15!94;UBERON:0003075!2.72e-14!86;UBERON:0007284!2.72e-14!86;UBERON:0002780!8.02e-14!41;UBERON:0001890!8.02e-14!41;UBERON:0006240!8.02e-14!41;UBERON:0003080!2.03e-13!42;UBERON:0002346!2.05e-13!90;UBERON:0000988!2.97e-11!3;UBERON:0002020!8.24e-11!34;UBERON:0003528!8.24e-11!34;UBERON:0000153!1.55e-10!129;UBERON:0007811!1.55e-10!129;UBERON:0001893!1.57e-10!34;UBERON:0003076!1.78e-10!15;UBERON:0003057!1.78e-10!15;UBERON:0000025!1.98e-10!194;UBERON:0002107!2.24e-10!19;UBERON:0006925!2.24e-10!19;UBERON:0008836!2.24e-10!19;UBERON:0000033!2.50e-10!123;UBERON:0004733!4.91e-10!12;UBERON:0002028!4.91e-10!12;UBERON:0007277!4.91e-10!12;UBERON:0002680!1.02e-09!9;UBERON:0001895!1.02e-09!9;UBERON:0010092!1.02e-09!9;UBERON:0003056!1.28e-09!61;UBERON:0002368!1.47e-09!35;UBERON:0009497!1.67e-09!25;UBERON:0000015!1.67e-09!25;UBERON:0002423!1.67e-09!25;UBERON:0006235!1.67e-09!25;UBERON:0004161!1.67e-09!25;UBERON:0001869!1.72e-09!32;UBERON:0004732!3.31e-09!13;UBERON:0002308!3.66e-09!9;UBERON:0000125!3.66e-09!9;UBERON:0002791!4.22e-09!33;UBERON:0005057!5.71e-09!26;UBERON:0008835!9.01e-09!22;UBERON:0003894!9.01e-09!22;UBERON:0000200!1.09e-08!6;UBERON:0009854!2.49e-08!23;UBERON:0000007!3.32e-08!2;UBERON:0002148!4.39e-08!2;UBERON:0009662!4.39e-08!2;UBERON:0001875!9.34e-08!2;UBERON:0006514!9.34e-08!2;UBERON:0003929!9.85e-08!54;UBERON:0004111!1.29e-07!241;UBERON:0007499!1.48e-07!25;UBERON:0000475!2.48e-07!365;UBERON:0009856!3.26e-07!26;UBERON:0002298!3.89e-07!8;UBERON:0000483!4.45e-07!309;UBERON:0000949!6.16e-07!45;UBERON:0000119!6.28e-07!312 | |ontology_enrichment_uberon=UBERON:0001049!5.15e-22!57;UBERON:0005068!5.15e-22!57;UBERON:0006241!5.15e-22!57;UBERON:0007135!5.15e-22!57;UBERON:0007023!1.11e-21!115;UBERON:0002616!5.03e-19!59;UBERON:0000955!5.98e-19!69;UBERON:0006238!5.98e-19!69;UBERON:0005743!2.95e-17!86;UBERON:0001017!1.11e-16!82;UBERON:0000073!4.51e-15!94;UBERON:0001016!4.51e-15!94;UBERON:0003075!2.72e-14!86;UBERON:0007284!2.72e-14!86;UBERON:0002780!8.02e-14!41;UBERON:0001890!8.02e-14!41;UBERON:0006240!8.02e-14!41;UBERON:0003080!2.03e-13!42;UBERON:0002346!2.05e-13!90;UBERON:0000988!2.97e-11!3;UBERON:0002020!8.24e-11!34;UBERON:0003528!8.24e-11!34;UBERON:0000153!1.55e-10!129;UBERON:0007811!1.55e-10!129;UBERON:0001893!1.57e-10!34;UBERON:0003076!1.78e-10!15;UBERON:0003057!1.78e-10!15;UBERON:0000025!1.98e-10!194;UBERON:0002107!2.24e-10!19;UBERON:0006925!2.24e-10!19;UBERON:0008836!2.24e-10!19;UBERON:0000033!2.50e-10!123;UBERON:0004733!4.91e-10!12;UBERON:0002028!4.91e-10!12;UBERON:0007277!4.91e-10!12;UBERON:0002680!1.02e-09!9;UBERON:0001895!1.02e-09!9;UBERON:0010092!1.02e-09!9;UBERON:0003056!1.28e-09!61;UBERON:0002368!1.47e-09!35;UBERON:0009497!1.67e-09!25;UBERON:0000015!1.67e-09!25;UBERON:0002423!1.67e-09!25;UBERON:0006235!1.67e-09!25;UBERON:0004161!1.67e-09!25;UBERON:0001869!1.72e-09!32;UBERON:0004732!3.31e-09!13;UBERON:0002308!3.66e-09!9;UBERON:0000125!3.66e-09!9;UBERON:0002791!4.22e-09!33;UBERON:0005057!5.71e-09!26;UBERON:0008835!9.01e-09!22;UBERON:0003894!9.01e-09!22;UBERON:0000200!1.09e-08!6;UBERON:0009854!2.49e-08!23;UBERON:0000007!3.32e-08!2;UBERON:0002148!4.39e-08!2;UBERON:0009662!4.39e-08!2;UBERON:0001875!9.34e-08!2;UBERON:0006514!9.34e-08!2;UBERON:0003929!9.85e-08!54;UBERON:0004111!1.29e-07!241;UBERON:0007499!1.48e-07!25;UBERON:0000475!2.48e-07!365;UBERON:0009856!3.26e-07!26;UBERON:0002298!3.89e-07!8;UBERON:0000483!4.45e-07!309;UBERON:0000949!6.16e-07!45;UBERON:0000119!6.28e-07!312 | ||
|ontology_enrichment_uberon_v019=UBERON:0002107;9.03e-24;19!UBERON:0006925;9.03e-24;19!UBERON:0002423;4.09e-18;25!UBERON:0002365;1.31e-14;31!UBERON:0002330;1.31e-14;31!UBERON:0002368;2.15e-12;33!UBERON:0002148;2.60e-10;2!UBERON:0006331;2.60e-10;2!UBERON:0009662;2.60e-10;2!UBERON:0002680;6.10e-09;9!UBERON:0001895;6.10e-09;9!UBERON:0000949;1.25e-08;43!UBERON:0000988;2.71e-07;3!UBERON:0004733;6.35e-07;12!UBERON:0002028;6.35e-07;12 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002107,1.09e-23,19;UBERON:0006925,1.09e-23,19;UBERON:0008836,1.09e-23,19;UBERON:0008835,1.73e-20,22;UBERON:0003894,1.73e-20,22;UBERON:0009854,1.32e-19,23;UBERON:0007499,4.72e-18,25;UBERON:0009497,4.72e-18,25;UBERON:0000015,4.72e-18,25;UBERON:0002423,4.72e-18,25;UBERON:0006235,4.72e-18,25;UBERON:0004161,4.72e-18,25;UBERON:0009856,2.30e-17,26;UBERON:0002365,1.37e-14,31;UBERON:0002330,1.37e-14,31;UBERON:0002368,6.18e-13,35;UBERON:0003929,7.40e-12,54;UBERON:0002148,3.27e-10,2;UBERON:0006331,3.27e-10,2;UBERON:0009662,3.27e-10,2;UBERON:0000949,4.43e-10,45;UBERON:0002680,6.11e-09,9;UBERON:0001895,6.11e-09,9;UBERON:0010092,6.11e-09,9;UBERON:0005172,2.09e-08,54;UBERON:0005173,2.09e-08,54;UBERON:0005911,9.51e-08,82;UBERON:0002530,1.07e-07,59;UBERON:0002417,1.44e-07,60;UBERON:0000916,1.44e-07,60;UBERON:0000988,3.16e-07,3;UBERON:0004733,6.35e-07,12;UBERON:0002028,6.35e-07,12;UBERON:0007277,6.35e-07,12 | |||
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|short_description=p8@SCN8A | |short_description=p8@SCN8A | ||
}} | }} |
Latest revision as of 20:33, 18 September 2015
Short description: | p8@SCN8A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SCN8A_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 17bp_to_ENST00000545061, NM_001177984_5end |
EntrezGene: | SCN8A |
HGNC: | 10596 |
UniProt: | Q9UQD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.45e-14 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 1.09e-23 | 19 |
digestive gland | 1.09e-23 | 19 |
liver bud | 1.09e-23 | 19 |
hepatic diverticulum | 1.73e-20 | 22 |
liver primordium | 1.73e-20 | 22 |
digestive tract diverticulum | 1.32e-19 | 23 |
epithelial sac | 4.72e-18 | 25 |
epithelium of foregut-midgut junction | 4.72e-18 | 25 |
anatomical boundary | 4.72e-18 | 25 |
hepatobiliary system | 4.72e-18 | 25 |
foregut-midgut junction | 4.72e-18 | 25 |
septum transversum | 4.72e-18 | 25 |
sac | 2.30e-17 | 26 |
exocrine gland | 1.37e-14 | 31 |
exocrine system | 1.37e-14 | 31 |
endocrine gland | 6.18e-13 | 35 |
gut epithelium | 7.40e-12 | 54 |
locus ceruleus | 3.27e-10 | 2 |
brainstem nucleus | 3.27e-10 | 2 |
hindbrain nucleus | 3.27e-10 | 2 |
endocrine system | 4.43e-10 | 45 |
regional part of metencephalon | 6.11e-09 | 9 |
metencephalon | 6.11e-09 | 9 |
future metencephalon | 6.11e-09 | 9 |
abdomen element | 2.09e-08 | 54 |
abdominal segment element | 2.09e-08 | 54 |
endo-epithelium | 9.51e-08 | 82 |
gland | 1.07e-07 | 59 |
abdominal segment of trunk | 1.44e-07 | 60 |
abdomen | 1.44e-07 | 60 |
pons | 3.16e-07 | 3 |
segmental subdivision of hindbrain | 6.35e-07 | 12 |
hindbrain | 6.35e-07 | 12 |
presumptive hindbrain | 6.35e-07 | 12 |