FFCP PHASE1:Hg19::chr12:52056565..52056580,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=6334 | |EntrezGene=6334 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10596 | |HGNC=10596 | ||
|TSSclassifier=strong | |||
|UniProt=Q9UQD0 | |UniProt=Q9UQD0 | ||
|association_with_transcript=17bp_to_ENST00000545061,NM_001177984_5end | |association_with_transcript=17bp_to_ENST00000545061,NM_001177984_5end | ||
|cluster_id=chr12:52056565..52056580,+ | |||
|coexpression_cluster_id=C5 | |coexpression_cluster_id=C5 | ||
|description=CAGE_peak_8_at_SCN8A_5end | |description=CAGE_peak_8_at_SCN8A_5end | ||
|id=chr12:52056565..52056580,+ | |id=chr12:52056565..52056580,+ | ||
|ontology_enrichment_celltype=CL:0000182;3.15e-14;12 | |ontology_enrichment_celltype=CL:0000181!1.30e-09!12;CL:0000417!1.30e-09!12;CL:0000668!1.30e-09!12;CL:0000414!1.30e-09!12;CL:0000412!1.30e-09!12;CL:0000182!1.30e-09!12 | ||
| | |ontology_enrichment_celltype_v019=CL:0000182;3.15e-14;12 | ||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.45e-14,12 | |||
|ontology_enrichment_development_v019=UBERON:0004161;2.55e-15;11!UBERON:0009497;4.56e-13;13!UBERON:0006215;2.71e-07;3 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
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|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019=UBERON:0002107;9.03e-24;19!UBERON:0006925;9.03e-24;19!UBERON:0002423;4.09e-18;25!UBERON:0002365;1.31e-14;31!UBERON:0002330;1.31e-14;31!UBERON:0002368;2.15e-12;33!UBERON:0002148;2.60e-10;2!UBERON:0006331;2.60e-10;2!UBERON:0009662;2.60e-10;2!UBERON:0002680;6.10e-09;9!UBERON:0001895;6.10e-09;9!UBERON:0000949;1.25e-08;43!UBERON:0000988;2.71e-07;3!UBERON:0004733;6.35e-07;12!UBERON:0002028;6.35e-07;12 | |||
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| ||
|short_description=p8@SCN8A | |short_description=p8@SCN8A | ||
}} | }} |
Latest revision as of 20:33, 18 September 2015
Short description: | p8@SCN8A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_SCN8A_5end |
Coexpression cluster: | C5_Hepatocyte_liver_hepatocellular_Intestinal_kidney_small_pancreas |
Association with transcript: | 17bp_to_ENST00000545061, NM_001177984_5end |
EntrezGene: | SCN8A |
HGNC: | 10596 |
UniProt: | Q9UQD0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.45e-14 | 12 |
Ontology term | p-value | n |
---|---|---|
liver | 1.09e-23 | 19 |
digestive gland | 1.09e-23 | 19 |
liver bud | 1.09e-23 | 19 |
hepatic diverticulum | 1.73e-20 | 22 |
liver primordium | 1.73e-20 | 22 |
digestive tract diverticulum | 1.32e-19 | 23 |
epithelial sac | 4.72e-18 | 25 |
epithelium of foregut-midgut junction | 4.72e-18 | 25 |
anatomical boundary | 4.72e-18 | 25 |
hepatobiliary system | 4.72e-18 | 25 |
foregut-midgut junction | 4.72e-18 | 25 |
septum transversum | 4.72e-18 | 25 |
sac | 2.30e-17 | 26 |
exocrine gland | 1.37e-14 | 31 |
exocrine system | 1.37e-14 | 31 |
endocrine gland | 6.18e-13 | 35 |
gut epithelium | 7.40e-12 | 54 |
locus ceruleus | 3.27e-10 | 2 |
brainstem nucleus | 3.27e-10 | 2 |
hindbrain nucleus | 3.27e-10 | 2 |
endocrine system | 4.43e-10 | 45 |
regional part of metencephalon | 6.11e-09 | 9 |
metencephalon | 6.11e-09 | 9 |
future metencephalon | 6.11e-09 | 9 |
abdomen element | 2.09e-08 | 54 |
abdominal segment element | 2.09e-08 | 54 |
endo-epithelium | 9.51e-08 | 82 |
gland | 1.07e-07 | 59 |
abdominal segment of trunk | 1.44e-07 | 60 |
abdomen | 1.44e-07 | 60 |
pons | 3.16e-07 | 3 |
segmental subdivision of hindbrain | 6.35e-07 | 12 |
hindbrain | 6.35e-07 | 12 |
presumptive hindbrain | 6.35e-07 | 12 |