FFCP PHASE1:Hg19::chr11:62559455..62559494,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr11:62559455..62559494,- to FFCP PHASE1:Hg19::chr11:62559455..62559494,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=79064 | |EntrezGene=79064 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=28464 | |HGNC=28464 | ||
|TSSclassifier=strong | |||
|UniProt=A0PJW6,G5EA27 | |UniProt=A0PJW6,G5EA27 | ||
|association_with_transcript=0bp_to_ENST00000307366,ENST00000525631,ENST00000528367,NM_001080501,uc001nve.2_5end | |||
|cluster_id=chr11:62559455..62559494,- | |||
|description=CAGE_peak_1_at_TMEM223_5end | |||
|id=chr11:62559455..62559494,- | |||
|ontology_enrichment_celltype=CL:0000066!1.42e-15!254;CL:0000055!1.08e-07!180;CL:0002321!2.42e-07!248;CL:0000220!4.21e-07!246;CL:1000497!7.95e-07!18;CL:0002518!7.95e-07!18 | |||
|ontology_enrichment_celltype_v019=CL:1000497;3.11e-07;17!CL:0002518;3.11e-07;17!CL:1000449;5.20e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.20e-15,253;CL:0002321,2.38e-07,250;CL:1000497,3.29e-07,17;CL:0002518,3.29e-07,17;CL:1000449,5.83e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:0050687!4.06e-14!143;DOID:162!4.80e-14!235;DOID:305!2.25e-13!106;DOID:14566!9.11e-13!239 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:0050687,4.06e-14,143;DOID:162,4.80e-14,235;DOID:305,2.25e-13,106;DOID:14566,9.11e-13,239 | |||
|ontology_enrichment_uberon=UBERON:0000481!2.81e-12!347;UBERON:0009569!3.00e-11!113;UBERON:0003104!1.02e-10!238;UBERON:0009142!1.02e-10!238;UBERON:0000064!6.19e-10!219;UBERON:0002100!4.72e-09!216;UBERON:0000072!3.66e-08!46;UBERON:0000063!3.66e-08!97;UBERON:0002417!7.26e-08!61;UBERON:0000916!7.26e-08!61;UBERON:0000475!1.17e-07!365;UBERON:0005177!1.49e-07!107;UBERON:0004119!2.62e-07!169;UBERON:0000925!2.62e-07!169;UBERON:0006595!2.62e-07!169;UBERON:0008947!3.22e-07!38;UBERON:0003258!3.22e-07!38;UBERON:0002113!5.41e-07!27;UBERON:0003918!5.41e-07!27;UBERON:0005095!5.41e-07!27;UBERON:0007687!5.41e-07!27;UBERON:0005172!6.26e-07!55;UBERON:0005173!6.26e-07!55;UBERON:0006554!8.31e-07!44 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.36e-08;30!UBERON:0001008;1.36e-08;30!UBERON:0000072;4.49e-08;37!UBERON:0002113;4.72e-08;24!UBERON:0011143;4.72e-08;24!UBERON:0006555;5.20e-07;15!UBERON:0004819;5.20e-07;15!UBERON:0001285;5.20e-07;15!UBERON:0007684;5.20e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0009569,1.95e-11,112;UBERON:0002100,2.28e-11,199;UBERON:0003104,1.20e-09,160;UBERON:0009142,1.20e-09,160;UBERON:0005177,1.26e-08,101;UBERON:0002417,5.21e-08,60;UBERON:0000916,5.21e-08,60;UBERON:0000072,5.60e-08,47;UBERON:0004119,5.88e-08,160;UBERON:0000925,5.88e-08,160;UBERON:0006595,5.88e-08,160;UBERON:0006554,1.09e-07,47;UBERON:0002113,2.92e-07,26;UBERON:0003918,2.92e-07,26;UBERON:0011143,2.92e-07,26;UBERON:0005095,2.92e-07,26;UBERON:0007687,2.92e-07,26;UBERON:0008947,3.22e-07,38;UBERON:0003258,3.22e-07,38;UBERON:0001008,3.72e-07,48;UBERON:0005172,4.55e-07,54;UBERON:0005173,4.55e-07,54;UBERON:0001041,4.80e-07,87;UBERON:0004211,5.83e-07,15;UBERON:0009773,5.83e-07,15;UBERON:0001231,5.83e-07,15;UBERON:0001285,5.83e-07,15;UBERON:0007684,5.83e-07,15;UBERON:0004208,5.83e-07,15 | |||
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| ||
|short_description=p1@TMEM223 | |||
}} | }} |
Latest revision as of 21:33, 18 September 2015
Short description: | p1@TMEM223 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_TMEM223_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000307366, ENST00000525631, ENST00000528367, NM_001080501, uc001nve.2_5end |
EntrezGene: | TMEM223 |
HGNC: | 28464 |
UniProt: | A0PJW6G5EA27 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.20e-15 | 253 |
embryonic cell | 2.38e-07 | 250 |
kidney cell | 3.29e-07 | 17 |
kidney epithelial cell | 3.29e-07 | 17 |
epithelial cell of nephron | 5.83e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
subdivision of trunk | 1.95e-11 | 112 |
trunk | 2.28e-11 | 199 |
mesenchyme | 1.20e-09 | 160 |
entire embryonic mesenchyme | 1.20e-09 | 160 |
trunk region element | 1.26e-08 | 101 |
abdominal segment of trunk | 5.21e-08 | 60 |
abdomen | 5.21e-08 | 60 |
segment of respiratory tract | 5.60e-08 | 47 |
endoderm-derived structure | 5.88e-08 | 160 |
endoderm | 5.88e-08 | 160 |
presumptive endoderm | 5.88e-08 | 160 |
urinary system structure | 1.09e-07 | 47 |
kidney | 2.92e-07 | 26 |
kidney mesenchyme | 2.92e-07 | 26 |
upper urinary tract | 2.92e-07 | 26 |
kidney rudiment | 2.92e-07 | 26 |
kidney field | 2.92e-07 | 26 |
respiratory primordium | 3.22e-07 | 38 |
endoderm of foregut | 3.22e-07 | 38 |
renal system | 3.72e-07 | 48 |
abdomen element | 4.55e-07 | 54 |
abdominal segment element | 4.55e-07 | 54 |
foregut | 4.80e-07 | 87 |
nephron epithelium | 5.83e-07 | 15 |
renal tubule | 5.83e-07 | 15 |
nephron tubule | 5.83e-07 | 15 |
nephron | 5.83e-07 | 15 |
uriniferous tubule | 5.83e-07 | 15 |
nephrogenic mesenchyme | 5.83e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cell type cancer | 4.06e-14 | 143 |
cancer | 4.80e-14 | 235 |
carcinoma | 2.25e-13 | 106 |
disease of cellular proliferation | 9.11e-13 | 239 |