FFCP PHASE1:Hg19::chr12:52639223..52639262,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr12:52639223..52639262,+ to FFCP PHASE1:Hg19::chr12:52639223..52639262,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=3855 | |EntrezGene=3855 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6445 | |HGNC=6445 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_ENST00000548657_5end | |||
|cluster_id=chr12:52639223..52639262,+ | |||
|coexpression_cluster_id=C689 | |||
|description=CAGE_peak_6_at_KRT7_5end | |||
|id=chr12:52639223..52639262,+ | |||
|ontology_enrichment_celltype=CL:0000066!1.12e-45!254;CL:0000076!2.57e-14!62;CL:0000063!1.31e-11!578;CL:0002076!1.37e-10!43;CL:0000077!4.67e-10!19;CL:0002368!8.41e-09!13;CL:0000548!7.62e-07!679;CL:0000004!7.62e-07!679;CL:0000255!7.62e-07!679 | |||
|ontology_enrichment_celltype_v019=CL:0000077;5.06e-18;19!CL:0002368;6.70e-09;13!CL:0002076;1.15e-07;42!CL:0000076;1.22e-07;63 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,1.30e-42,253;CL:0000077,4.91e-18,19;CL:0000076,5.85e-14,63;CL:0002076,8.02e-11,42;CL:0002368,4.04e-09,13;CL:0000213,9.50e-08,58;CL:0000215,9.50e-08,58;CL:0000223,4.11e-07,58 | |||
|ontology_enrichment_development_v019=UBERON:0008947;4.18e-09;29 | |||
|ontology_enrichment_disease=DOID:305!2.48e-14!106;DOID:0050687!1.54e-09!143 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2=DOID:305,1.49e-13,106;DOID:0050687,9.09e-10,143;DOID:162,1.79e-07,235;DOID:14566,4.78e-07,239 | |||
|ontology_enrichment_uberon=UBERON:0004119!9.02e-14!169;UBERON:0000925!9.02e-14!169;UBERON:0006595!9.02e-14!169;UBERON:0000065!1.04e-13!53;UBERON:0001004!2.46e-12!72;UBERON:0008947!5.44e-12!38;UBERON:0003258!5.44e-12!38;UBERON:0000077!3.68e-11!130;UBERON:0000072!4.14e-11!46;UBERON:0000464!1.29e-10!104;UBERON:0001048!1.88e-09!168;UBERON:0001041!2.79e-09!98;UBERON:0001007!5.86e-09!155;UBERON:0001555!5.86e-09!155;UBERON:0007026!5.86e-09!155;UBERON:0000466!8.24e-09!126;UBERON:0001737!8.71e-09!9;UBERON:0005631!1.65e-08!14;UBERON:0000158!1.65e-08!14;UBERON:0005153!2.03e-08!37;UBERON:0005911!2.24e-08!82;UBERON:0004921!5.94e-08!129;UBERON:0004185!5.94e-08!129;UBERON:0003124!2.02e-07!7;UBERON:0006554!2.26e-07!44;UBERON:0000063!3.46e-07!97;UBERON:0001557!3.95e-07!19;UBERON:0001008!5.01e-07!45 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;3.22e-14;9!UBERON:0001557;3.22e-14;9!UBERON:0000065;1.05e-10;44!UBERON:0000072;5.58e-10;37!UBERON:0001004;6.74e-07;65!UBERON:0001987;9.73e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,3.11e-14,9;UBERON:0004119,4.12e-12,160;UBERON:0000925,4.12e-12,160;UBERON:0006595,4.12e-12,160;UBERON:0003124,7.60e-12,7;UBERON:0000065,4.02e-11,54;UBERON:0005631,6.69e-11,14;UBERON:0000158,6.69e-11,14;UBERON:0008947,6.72e-11,38;UBERON:0003258,6.72e-11,38;UBERON:0001004,1.79e-10,74;UBERON:0000072,5.41e-09,47;UBERON:0001041,5.55e-08,87;UBERON:0001048,6.61e-08,160;UBERON:0001557,3.50e-07,19;UBERON:0001007,5.49e-07,145;UBERON:0001555,5.49e-07,145;UBERON:0007026,5.49e-07,145;UBERON:0001987,5.76e-07,4;UBERON:0004340,5.76e-07,4;UBERON:0006554,9.27e-07,47 | |||
|phase1_expression=0.181678379270557,0.214100523890983,0.140954404095971,0,0,0,0,0,0,13.515366507583,54.4284911018493,9.61142037372758,4.22027165165526,0,0,0,0,0,0,0,0,0.626909442956176,0,0,0.125542639594803,0.0764134057479513,0,0,0,0,0,0.919421224478927,2.71085326900425,0.739508020333575,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.182664153764634,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.111410456885174,0,0,0,0,0,0.164437904603676,0,0.289803085735052,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0843174571537,0.50133791063589,1.44846518960824,0,0,0.0945348171640679,3.1042115644759,2.0202000709419,0.0654895377488563,0,0.370784442784429,0,0,0,0,0,0,0.198762407366705,0,2.08284300964557,0.56530794192401,1.67799774483962,6.32771496462155,0.835979866147242,0,0,0,2.01414658554573,0.760272105718513,0.24406205754817,0.367663080345869,9.72170337458112,0,0,0,0,0,0.183201743930407,0,0,3.92484646928281,0,0.506522046658319,0.132409180813219,0,0.354668382198357,0.560677600142307,2.1349799145941,2.96001058100592,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0.358779271377724,0.427114777637135,0,0.600182192168805,0,0.515281080091258,0.37223371266318,0.675105328965065,2.04617710838517,0,0,0.484938170456436,0,0.201504196455281,1.18692414617341,4.05847791642923,0,3.15485054927904,0,0,0.116193942869518,0,0,0,0,0,0,0,0,3.19428360107579,4.21461725195254,2.41011029883482,5.07352274569012,3.4860711054785,3.55905928666645,2.69662616320329,2.5508790466295,2.69323009862473,0,0,0,0,0,0,0,0,0,1.54411029268673,3.07300799144152,1.1240175325762,0,0.462942225792648,0,0,2.88662684050547,0,1.40890433082986,0,0,0,0,0,0,0,0,0,1.00789276919316,0.141775097242386,2.7763142037883,5.52204483176528,1.91691339582606,0,0,0,0,0,0,0,0,0,0,0,0,0.224262168690721,0,0,0.129271715757778,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,3.91871190177462,1.74306691720059,11.5968669771186,0,0,0,0,0,0,0,1.02738161275192,0.179060963239896,0.560425719967636,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.45579603071565,0.713715955188647,0.630809660135739,0,0,0,0,0,0,0,0,0,0,0,0,3.94065842880137,6.65741758041988,1.81434175997808,0.744323423456331,1.68808170616869,2.24528075546459,0.640695746278505,0.511707249066704,0.965123526861645,1.48418066444991,0,0,0,0,0.116210378459959,0,16.2410240945661,1.93370076765382,0.229628896329213,0,0,4.06079651616671,2.38747545023686,0.784349769176855,2.92278449306521,0.949964660035881,0,0.170093705276516,0.431831832204279,0,0.270946437543853,0,3.82314409567557,0.831076008928724,0.223874754722178,0,0,0.256450125116389,16.0727176392856,7.48370307727897,0.515205058238611,0,0,0.574265537996172,1.30012049207304,0,0.096670718292122,0,0,0,0,0,0,0,3.47098322258054,1.72971060628596,2.4246415373971,1.92199783625545,0,0,0,0,0,0,0,0.286249773483982,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48763373908959,0,0,0.136499911407986,0,0,0,0,0.438450885253763,0,0,0,0.30982349809975,0,0,0.0982490410131212,0,0,0.211107635297664,0,0,0,0.48111056362756,4.69211592875051,5.44454924306613,0.659006605437454,2.58303223602738,6.73885902670502,1.33029046061003,0.459446800413919,0,0,0,0,0,0,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0,0,0,0,0,0.37428108081644,0,0,1.11443384277478,0,2.3874448473769,0.593929361665277,0.614321404198464,0,0,0.111308705022906,0,0.63337622438398,0,0,0.251932747854276,0,0.123084805461069,0,6.74012633604951,3.04335996948536,0,0.0986434056369336,0,0,0,0,0,0,0.962059999958153,0,0,2.79679015322043,2.12748913591143,0,0,0,0,0,0,0,0,0,1.74301541630384,0,0,0,0.23056390438806,1.79515288819544,0.325942115766024,4.46601623624687,5.67905079091546,13.3258694004659,0,0,0,0,0,0,0,0,0,2.93819054686466,0,0,0,0,0,0.296521128680622,2.34771483998355,0.730953646538188,0,0,0,0,1.17398771359254,0,0.394584402849391,0,0,0,0,0,0,0.330991955875499,0.313932918407225,0,0.853828638089378,0,1.21491816834592,0.0979923974143777,1.82824333818845,0,0,1.45134496933628,0.730893170861856,1.39596276990456,0,0,0,0.137041924646751,0,0,2.34661659281764,0.961905843018405,0.426905989478705,5.79447867788178,0.288180834308212,0,0,0.288109595976299,0,2.82832841540154,0,0,0,0,0,0,0,0.859530882839914,0,0,0,0,0.798716001995964,0,0,0,0,0,0,0,0,0.0984274815147488,0,0,0,0,0,0,0,0,0,0,0.236417121897595,0.104909176269996,0.211200673038813,0.179287339332845,1.34340638123612,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.02652102730598,0,0.747511887973863,0.314408610199332,0,0,0,0,1.27668251554036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.941063278792687,0,0,0,0,0,0,0,0,0,0,0.310874401165561,0,0.318593534327405,0,0,0,0,1.04349012362347,0.150257608997218,1.52322084867518,1.22061219961398,0,1.07410557042488,0,0,0.400027764663154,0,0,0,0,2.78774068787403,4.17590867144339,25.6177695828868,6.25110680674352,5.62894420364875,5.55175407352611,9.26404341482917,7.01708958651863,1.06013487567529,11.7677563345258,4.05461857567374,0,0,2.73473960559644,0,0,0,0,0,2.94927490504463,0.845248493434508,0.39997479170986,0,0,0,0,0.839277046316667,4.97661808026378,0,0,0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| ||
|short_description=p6@KRT7 | |||
}} | }} |
Latest revision as of 22:12, 18 September 2015
Short description: | p6@KRT7 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_KRT7_5end |
Coexpression cluster: | C689_Alveolar_mesothelioma_Retinal_Mesothelial_Prostate_bile_Tracheal |
Association with transcript: | 0bp_to_ENST00000548657_5end |
EntrezGene: | KRT7 |
HGNC: | 6445 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 1.30e-42 | 253 |
mesothelial cell | 4.91e-18 | 19 |
squamous epithelial cell | 5.85e-14 | 63 |
endo-epithelial cell | 8.02e-11 | 42 |
respiratory epithelial cell | 4.04e-09 | 13 |
lining cell | 9.50e-08 | 58 |
barrier cell | 9.50e-08 | 58 |
endodermal cell | 4.11e-07 | 58 |
Ontology term | p-value | n |
---|---|---|
larynx | 3.11e-14 | 9 |
endoderm-derived structure | 4.12e-12 | 160 |
endoderm | 4.12e-12 | 160 |
presumptive endoderm | 4.12e-12 | 160 |
chorion | 7.60e-12 | 7 |
respiratory tract | 4.02e-11 | 54 |
extraembryonic membrane | 6.69e-11 | 14 |
membranous layer | 6.69e-11 | 14 |
respiratory primordium | 6.72e-11 | 38 |
endoderm of foregut | 6.72e-11 | 38 |
respiratory system | 1.79e-10 | 74 |
segment of respiratory tract | 5.41e-09 | 47 |
foregut | 5.55e-08 | 87 |
primordium | 6.61e-08 | 160 |
upper respiratory tract | 3.50e-07 | 19 |
digestive system | 5.49e-07 | 145 |
digestive tract | 5.49e-07 | 145 |
primitive gut | 5.49e-07 | 145 |
placenta | 5.76e-07 | 4 |
allantois | 5.76e-07 | 4 |
urinary system structure | 9.27e-07 | 47 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 1.49e-13 | 106 |
cell type cancer | 9.09e-10 | 143 |
cancer | 1.79e-07 | 235 |
disease of cellular proliferation | 4.78e-07 | 239 |