FFCP PHASE1:Hg19::chr8:72756194..72756208,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9242 | |EntrezGene=9242 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=7321 | |HGNC=7321 | ||
|TSSclassifier=strong | |||
|UniProt=O60682 | |UniProt=O60682 | ||
|association_with_transcript=190bp_to_AF087036_5end | |association_with_transcript=190bp_to_AF087036_5end | ||
|cluster_id=chr8:72756194..72756208,- | |||
|coexpression_cluster_id=C2927 | |||
|description=CAGE_peak_9_at_MSC_5end | |description=CAGE_peak_9_at_MSC_5end | ||
|id=chr8:72756194..72756208,- | |id=chr8:72756194..72756208,- | ||
|ontology_enrichment_celltype=CL:0000048!9.63e-18!430;CL:0000723!2.04e-17!436;CL:0000034!6.96e-16!444;CL:0000219!6.71e-15!390;CL:0000055!1.38e-14!180;CL:0000134!5.18e-13!358;CL:0002320!4.24e-12!365;CL:0002371!4.63e-11!591;CL:0000144!1.27e-10!625;CL:0002194!3.09e-09!63;CL:0000576!3.09e-09!63;CL:0000040!3.09e-09!63;CL:0000559!3.09e-09!63;CL:0002057!8.94e-09!42;CL:0000057!1.27e-08!75;CL:0002009!1.62e-08!65;CL:0000860!1.81e-07!45;CL:0000839!5.93e-07!70;CL:0002334!6.90e-07!12 | |ontology_enrichment_celltype=CL:0000048!9.63e-18!430;CL:0000723!2.04e-17!436;CL:0000034!6.96e-16!444;CL:0000219!6.71e-15!390;CL:0000055!1.38e-14!180;CL:0000134!5.18e-13!358;CL:0002320!4.24e-12!365;CL:0002371!4.63e-11!591;CL:0000144!1.27e-10!625;CL:0002194!3.09e-09!63;CL:0000576!3.09e-09!63;CL:0000040!3.09e-09!63;CL:0000559!3.09e-09!63;CL:0002057!8.94e-09!42;CL:0000057!1.27e-08!75;CL:0002009!1.62e-08!65;CL:0000860!1.81e-07!45;CL:0000839!5.93e-07!70;CL:0002334!6.90e-07!12 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.37e-10;33!CL:0002057;1.37e-10;33!CL:0000473;8.37e-10;39!CL:0000234;8.37e-10;39!CL:0000576;6.90e-08;48 | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,1.84e-20,386;CL:0000134,7.76e-18,354;CL:0002320,5.23e-17,361;CL:0000048,2.46e-15,427;CL:0000723,9.29e-15,433;CL:0000473,3.67e-14,48;CL:0000234,3.67e-14,48;CL:0002194,3.78e-14,59;CL:0000576,3.78e-14,59;CL:0000040,3.78e-14,59;CL:0000559,3.78e-14,59;CL:0000034,5.15e-14,441;CL:0002009,1.98e-13,61;CL:0000860,1.16e-12,42;CL:0002057,1.16e-12,42;CL:0000839,7.91e-12,66;CL:0000557,1.54e-11,67;CL:0000766,3.23e-10,72;CL:0002087,4.51e-08,115;CL:0002031,2.22e-07,120 | |||
|ontology_enrichment_development_v019=CL:0002057;9.04e-10;42 | |||
|ontology_enrichment_disease=DOID:2394!6.69e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;2.26e-10;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.25e-10,14 | |||
|ontology_enrichment_uberon=UBERON:0002384!5.87e-13!375;UBERON:0002204!2.00e-09!167 | |||
|ontology_enrichment_uberon_v019=UBERON:0004457;6.29e-11;9!UBERON:0000042;6.29e-11;9!UBERON:0003688;9.95e-10;6!UBERON:0002358;9.95e-10;6!UBERON:0003684;9.95e-10;6!UBERON:0001178;9.95e-10;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002384,2.45e-17,371;UBERON:0002371,5.36e-11,76;UBERON:0002405,8.80e-10,93;UBERON:0003688,9.09e-10,6;UBERON:0002358,9.09e-10,6;UBERON:0003684,9.09e-10,6;UBERON:0001178,9.09e-10,6;UBERON:0004457,1.21e-09,12;UBERON:0000042,1.21e-09,12;UBERON:0001474,1.28e-09,82;UBERON:0001434,1.08e-08,100;UBERON:0000926,2.60e-08,315;UBERON:0004120,2.60e-08,315;UBERON:0006603,2.60e-08,315;UBERON:0004765,4.33e-08,90;UBERON:0002390,4.74e-08,98;UBERON:0003061,4.74e-08,98;UBERON:0002193,2.71e-07,108 | |||
|phase1_expression=0.726713517082227,0.856402095563933,1.9733616573436,1.0007329835313,2.23480547213644,0,0,1.89515962028049,1.30592814099919,0.491467873003018,0,0,0,0,0,0,0,0,0,0,0,0.313454721478088,0,0,0,0.916960868975415,1.14940825229924,1.02324015707783,0,0.383829398097213,0.154816123316076,0,0,0.369754010166788,0,0,0,2.76997704265939,2.60707781711184,1.30206522429511,0,0,0,0.436194716338694,1.13362783106643,0.242584061187816,2.09186133215116,4.93401465626191,1.85823822537062,1.43846196161075,0.768482119587302,1.89185783910868,0,0,0,0.376484679085209,2.72906150057846,1.12361742222542,0.612167784741805,1.92557416245656,0,1.31940520074686,0.598390972864896,0.426224750532694,4.06292934080018,3.97169657283798,3.73693349397345,1.50749199154046,2.08593167368081,0.65156653411535,6.05399502633369,2.94622108790052,4.43047342417238,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.25618263945135,0.130059347559878,0,0,0,0,0,0,0,0,0,0.253019692019503,0,0,0,0,0.255973222308837,0,0,0,0,0,0.144824403882799,4.87613732627923,0,0.639312809217652,0.361439152384566,1.00267582127178,0.289693037921647,0,1.45990461090791,0,0,0.087834785693126,0,0,0,1.29818957461873,1.91542711029194,1.06366368415092,0.476981248610684,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,2.98183171017191,0.886413581652058,0.529636723252875,0.286836620748814,0.354668382198357,1.12135520028461,1.06748995729705,2.22000793575444,0,0.942974704487816,0.817309515567294,0.605429710579726,1.72852777344,4.68642863667593,0.312160076830321,0,0,0.23486899728753,0,0,0,0.122834317311768,0.929932030581889,2.37600571456411,3.4617370098998,0,2.87447256726495,0.168336113954066,0.250237039743928,0.554128230968366,0,0.612975591598039,2.10333282469236,1.13432183160021,0,0.427114777637135,0.423863802319124,0,0.515262646192195,0,0.37223371266318,0.168776332241266,0.68205903612839,0,0.460249493211497,0.323292113637624,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,1.28648187638577,0,0.928735856063958,0,0,0,0,0,0,0,0,0,0,0,0,0.8231480226628,1.47008711385542,0,0,0,0,0,0,0,0,0,0,0.977424915930974,1.03993478527958,0,0,0,0.288732895522148,0,0,0,0,0.984868024349589,2.80805118167085,1.63494278517601,0,0,0.141775097242386,0,0,0,0,0,0,0,0,2.22242630022592,1.52795370223311,1.17217447210047,1.71072446022705,0.616964956219941,0.600686115687835,1.42913216315289,0.112131084345361,0.87192013766656,0,1.42198887333556,14.3062578340753,0.845302752556,0.797814349754612,1.04007436911366,0,0,0,0.714889968290738,0,0,0.65147236858747,0,0,1.20575750823834,3.48613383440118,1.59956785891291,1.2162378064119,0,0,2.15662369942424,1.14861935834114,0,0.579125226670317,0,0,1.00876629594175,0,0,0,0,0,0,0.167516265334349,0.637938751653163,0,0,0,0,0,0.271265023699736,1.66376689224646,1.07057393278297,0.788512075169673,0.468565659970853,0.601892199455438,2.27407504055985,3.10419213877515,0.664225598535437,0.184369168541703,0.434418072340414,0,0,0,0.647142602455851,0.213455115606889,0,0,0,2.72918588600655,1.38115775959256,0.561320188866147,3.07533958213682,1.53512174720011,2.57366273829772,1.48418066444991,0.462629081407967,1.06537035187876,0.98552587216571,0.519254429183621,0.116210378459959,0,0,0,0.459257792658427,0.546273504020151,1.57349297951309,0.902399225814824,0.0770153371044148,0,0,0.211103257785751,0,0,0,0,0,0,0,0,0,0,0,0,0.328014645699706,0.650756789328606,0.206082023295445,0,0.082509499920588,0,0,0,2.32009723901093,0.308097234229289,0.460511024178389,0,0.322260734604821,0,0.426133137080504,2.40386496246191,0.165284915360978,0.192190067365106,0,0,0,0,0,0.308033580176089,0.532306030317022,0.869932992075073,0.55597265731176,0.429374660225974,0.372158369359667,0.316379424718726,1.14378116354295,0.511795582622668,0,0.636406495851874,0.78494864019923,0.539617372749944,0.54907405947211,0.706874414074119,1.01091240786658,0,0.421258456238981,0.975267478179181,0.487426979262569,2.11300293513511,0.682499557039929,0.989838023675989,0,0,0.66343897524122,0,0.578775534266688,0,1.21746226177622,0.6196469961995,0.563391205064483,0.286822704408103,0,0.7133421029625,1.06428319221179,3.16661452946496,1.31717957183961,0.379473173765715,0.349934720244983,0,0,0,0.188287601553558,0,0,0,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199579371432817,0.957526850661834,0.211673582723883,0,0,0,0,0,0,0,0,0,0,0.307240764308458,0.447352215784832,1.00109485027145,0,0,0,0,0,0,0,0.439524537815682,0,1.44876399560722,0,0,0,0,0,0,0.222617410045812,0,0,0.597743964753209,0.276283915531148,0,0.306806047506464,0.738508832766417,0.622079175323615,0,0,0,0,0,0,0,0,0,0,0,0.724999575434793,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.384751292518985,6.26681307158507,0,0,0,0,0.183195186803725,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0884575645033392,0,0,0.123563938946503,0.104421949505455,0,0,0,0,0,0,0,1.20990716048664,0,1.20054501294127,0,0,0.664653872707185,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0969890164884194,0,0,0,0,0.0633107959558787,0,1.60317640503067,0.426905989478705,0,0,0,0,0,0,0,0.135904206073614,0.209205692624666,2.44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| 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| ||
|short_description=p9@MSC | |short_description=p9@MSC | ||
}} | }} |
Latest revision as of 01:04, 19 September 2015
Short description: | p9@MSC |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_9_at_MSC_5end |
Coexpression cluster: | C2927_cholangiocellular_mesenchymal_Fibroblast_CD14_glioma_Preadipocyte_Melanocyte |
Association with transcript: | 190bp_to_AF087036_5end |
EntrezGene: | MSC |
HGNC: | 7321 |
UniProt: | O60682 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
motile cell | 1.84e-20 | 386 |
mesenchymal cell | 7.76e-18 | 354 |
connective tissue cell | 5.23e-17 | 361 |
multi fate stem cell | 2.46e-15 | 427 |
somatic stem cell | 9.29e-15 | 433 |
defensive cell | 3.67e-14 | 48 |
phagocyte | 3.67e-14 | 48 |
monopoietic cell | 3.78e-14 | 59 |
monocyte | 3.78e-14 | 59 |
monoblast | 3.78e-14 | 59 |
promonocyte | 3.78e-14 | 59 |
stem cell | 5.15e-14 | 441 |
macrophage dendritic cell progenitor | 1.98e-13 | 61 |
classical monocyte | 1.16e-12 | 42 |
CD14-positive, CD16-negative classical monocyte | 1.16e-12 | 42 |
myeloid lineage restricted progenitor cell | 7.91e-12 | 66 |
granulocyte monocyte progenitor cell | 1.54e-11 | 67 |
myeloid leukocyte | 3.23e-10 | 72 |
nongranular leukocyte | 4.51e-08 | 115 |
hematopoietic lineage restricted progenitor cell | 2.22e-07 | 120 |
Ontology term | p-value | n |
---|---|---|
connective tissue | 2.45e-17 | 371 |
bone marrow | 5.36e-11 | 76 |
immune system | 8.80e-10 | 93 |
omentum | 9.09e-10 | 6 |
peritoneum | 9.09e-10 | 6 |
abdominal cavity | 9.09e-10 | 6 |
visceral peritoneum | 9.09e-10 | 6 |
cavity lining | 1.21e-09 | 12 |
serous membrane | 1.21e-09 | 12 |
bone element | 1.28e-09 | 82 |
skeletal system | 1.08e-08 | 100 |
mesoderm | 2.60e-08 | 315 |
mesoderm-derived structure | 2.60e-08 | 315 |
presumptive mesoderm | 2.60e-08 | 315 |
skeletal element | 4.33e-08 | 90 |
hematopoietic system | 4.74e-08 | 98 |
blood island | 4.74e-08 | 98 |
hemolymphoid system | 2.71e-07 | 108 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.25e-10 | 14 |