FFCP PHASE1:Hg19::chrX:110653981..110654022,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chrX:110653981..110654022,-
|short_description=p5@DCX
|description=CAGE_peak_5_at_DCX_5end
|association_with_transcript=154bp_to_AK297297_5end
|EntrezGene=1641...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1641 | |EntrezGene=1641 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=2714 | |HGNC=2714 | ||
|TSSclassifier=strong | |||
|UniProt=B4DM53 | |UniProt=B4DM53 | ||
|association_with_transcript=154bp_to_AK297297_5end | |||
|cluster_id=chrX:110653981..110654022,- | |||
|coexpression_cluster_id=C10 | |||
|description=CAGE_peak_5_at_DCX_5end | |||
|id=chrX:110653981..110654022,- | |||
|ontology_enrichment_celltype=CL:0000047!1.40e-16!8;CL:0000540!1.43e-08!6;CL:0000031!1.43e-08!6;CL:0000404!1.43e-08!6 | |||
|ontology_enrichment_celltype_v019=CL:0000540;2.32e-27;6!CL:0000404;2.32e-27;6!CL:0002319;5.25e-11;25!CL:0000047;1.72e-10;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000047,4.07e-36,8;CL:0000540,2.32e-27,6;CL:0000031,2.32e-27,6;CL:0000404,2.32e-27,6;CL:0002319,5.25e-11,25 | |||
|ontology_enrichment_development_v019=CL:0000031;2.32e-27;6!UBERON:0006238;1.75e-07;10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002619!1.05e-59!22;UBERON:0001950!4.39e-58!20;UBERON:0000956!2.24e-52!25;UBERON:0000203!2.24e-52!25;UBERON:0001869!5.93e-51!32;UBERON:0001893!8.54e-48!34;UBERON:0002791!4.98e-44!33;UBERON:0002020!1.18e-42!34;UBERON:0003528!1.18e-42!34;UBERON:0001017!1.17e-41!82;UBERON:0000073!7.13e-41!94;UBERON:0001016!7.13e-41!94;UBERON:0005743!1.74e-39!86;UBERON:0002780!4.15e-39!41;UBERON:0001890!4.15e-39!41;UBERON:0006240!4.15e-39!41;UBERON:0003080!4.25e-38!42;UBERON:0000955!1.58e-32!69;UBERON:0006238!1.58e-32!69;UBERON:0001049!3.71e-30!57;UBERON:0005068!3.71e-30!57;UBERON:0006241!3.71e-30!57;UBERON:0007135!3.71e-30!57;UBERON:0002616!5.32e-29!59;UBERON:0002021!1.79e-25!5;UBERON:0003056!4.25e-25!61;UBERON:0000924!9.02e-25!173;UBERON:0006601!9.02e-25!173;UBERON:0004121!1.19e-23!169;UBERON:0000033!1.04e-19!123;UBERON:0002346!1.16e-19!90;UBERON:0003075!1.35e-18!86;UBERON:0007284!1.35e-18!86;UBERON:0000153!1.49e-18!129;UBERON:0007811!1.49e-18!129;UBERON:0001872!1.58e-16!5;UBERON:0001871!8.22e-16!7;UBERON:0007023!2.52e-14!115;UBERON:0000200!8.47e-14!6;UBERON:0000349!1.19e-09!5;UBERON:0002771!8.93e-08!3 | |||
|ontology_enrichment_uberon_v019=UBERON:0002021;1.88e-15;5!UBERON:0001950;3.50e-14;20!UBERON:0002619;5.57e-13;22!UBERON:0000956;1.60e-11;25!UBERON:0000203;1.60e-11;25!UBERON:0000922;5.88e-09;49!UBERON:0002791;6.01e-09;32!UBERON:0001869;7.92e-09;32!UBERON:0000955;2.59e-08;68!UBERON:0003528;9.19e-08;34!UBERON:0002020;9.19e-08;34!UBERON:0001893;1.27e-07;34!UBERON:0002114;2.25e-07;2!UBERON:0002780;4.52e-07;41!UBERON:0001890;4.52e-07;41 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.46e-21,81;UBERON:0001016,5.82e-19,89;UBERON:0002021,2.02e-15,5;UBERON:0001950,3.63e-14,20;UBERON:0002619,5.74e-13,22;UBERON:0000956,1.64e-11,25;UBERON:0000203,1.64e-11,25;UBERON:0004121,1.02e-09,171;UBERON:0000924,1.02e-09,171;UBERON:0006601,1.02e-09,171;UBERON:0000955,3.60e-09,68;UBERON:0006238,3.60e-09,68;UBERON:0002791,3.89e-09,32;UBERON:0001869,3.89e-09,32;UBERON:0011216,6.17e-09,223;UBERON:0003528,1.25e-08,34;UBERON:0002020,1.25e-08,34;UBERON:0001893,1.25e-08,34;UBERON:0002114,2.32e-07,2;UBERON:0002780,3.09e-07,41;UBERON:0001890,3.09e-07,41;UBERON:0003080,3.09e-07,41;UBERON:0006240,3.09e-07,41 | |||
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|short_description=p5@DCX | |||
}} | }} |
Latest revision as of 01:45, 19 September 2015
Short description: | p5@DCX |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_5_at_DCX_5end |
Coexpression cluster: | C10_occipital_temporal_parietal_brain_duodenum_Neurons_Neural |
Association with transcript: | 154bp_to_AK297297_5end |
EntrezGene: | DCX |
HGNC: | 2714 |
UniProt: | B4DM53 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuronal stem cell | 4.07e-36 | 8 |
neuron | 2.32e-27 | 6 |
neuroblast | 2.32e-27 | 6 |
electrically signaling cell | 2.32e-27 | 6 |
neural cell | 5.25e-11 | 25 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.46e-21 | 81 |
nervous system | 5.82e-19 | 89 |
occipital lobe | 2.02e-15 | 5 |
neocortex | 3.63e-14 | 20 |
regional part of cerebral cortex | 5.74e-13 | 22 |
cerebral cortex | 1.64e-11 | 25 |
pallium | 1.64e-11 | 25 |
ectoderm-derived structure | 1.02e-09 | 171 |
ectoderm | 1.02e-09 | 171 |
presumptive ectoderm | 1.02e-09 | 171 |
brain | 3.60e-09 | 68 |
future brain | 3.60e-09 | 68 |
regional part of telencephalon | 3.89e-09 | 32 |
cerebral hemisphere | 3.89e-09 | 32 |
organ system subdivision | 6.17e-09 | 223 |
brain grey matter | 1.25e-08 | 34 |
gray matter | 1.25e-08 | 34 |
telencephalon | 1.25e-08 | 34 |
duodenum | 2.32e-07 | 2 |
regional part of forebrain | 3.09e-07 | 41 |
forebrain | 3.09e-07 | 41 |
anterior neural tube | 3.09e-07 | 41 |
future forebrain | 3.09e-07 | 41 |