FFCP PHASE1:Hg19::chr18:28682294..28682305,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr18:28682294..28682305,-
|short_description=p6@DSC2
|description=CAGE_peak_6_at_DSC2_5end
|association_with_transcript=72bp_to_ENST00000280904_5end
|EntrezGe...") |
No edit summary |
||
(10 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1824 | |EntrezGene=1824 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3036 | |HGNC=3036 | ||
|TSSclassifier=strong | |||
|UniProt=Q02487 | |UniProt=Q02487 | ||
|association_with_transcript=72bp_to_ENST00000280904_5end | |||
|cluster_id=chr18:28682294..28682305,- | |||
|description=CAGE_peak_6_at_DSC2_5end | |||
|id=chr18:28682294..28682305,- | |||
|ontology_enrichment_celltype=CL:0000066!3.57e-24!254;CL:0002076!7.21e-16!43;CL:0000223!1.20e-13!59;CL:0002251!2.08e-09!21 | |||
|ontology_enrichment_celltype_v019=CL:0002076;3.23e-11;42!CL:0002159;3.36e-11;14!CL:0002251;2.63e-08;20!CL:0002166;4.88e-08;3!CL:0000349;6.19e-08;19!CL:0002621;9.15e-08;3!CL:0002541;2.22e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.97e-15,253;CL:0002076,2.35e-13,42;CL:0002159,3.47e-11,14;CL:0000223,1.67e-09,58;CL:0002251,1.93e-08,20;CL:0000349,4.63e-08,19;CL:0002166,4.79e-08,3;CL:0002621,8.61e-08,3;CL:0002541,1.82e-07,3 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!1.76e-12!106;DOID:0050687!1.07e-07!143;DOID:1749!3.28e-07!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004119!8.02e-24!169;UBERON:0000925!8.02e-24!169;UBERON:0006595!8.02e-24!169;UBERON:0001007!5.45e-17!155;UBERON:0001555!5.45e-17!155;UBERON:0007026!5.45e-17!155;UBERON:0004921!2.01e-15!129;UBERON:0004185!2.01e-15!129;UBERON:0000077!2.01e-13!130;UBERON:0001004!1.78e-11!72;UBERON:0005911!2.21e-10!82;UBERON:0000464!4.52e-10!104;UBERON:0005631!4.90e-10!14;UBERON:0000158!4.90e-10!14;UBERON:0000466!1.46e-09!126;UBERON:0000161!1.74e-09!35;UBERON:0001041!7.60e-09!98;UBERON:0000166!9.42e-09!21;UBERON:0005153!3.34e-08!37;UBERON:0005409!6.95e-08!35;UBERON:0005157!1.09e-07!51;UBERON:0000062!1.79e-07!511;UBERON:0003124!1.80e-07!7;UBERON:0000065!6.17e-07!53 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;1.43e-14;33!UBERON:0005631;1.25e-13;10!UBERON:0000158;1.25e-13;10!UBERON:0001555;2.40e-11;54!UBERON:0000161;1.37e-09;19!UBERON:0000166;1.37e-09;19!UBERON:0005409;1.84e-09;22!UBERON:0001041;5.80e-09;14!UBERON:0000160;1.50e-08;17!UBERON:0000165;2.47e-08;28!UBERON:0000305;3.01e-08;7!UBERON:0001949;9.15e-08;3!UBERON:0002108;1.57e-07;4!UBERON:0003124;2.22e-07;3!UBERON:0000920;2.22e-07;3!UBERON:0000478;2.52e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,2.04e-14,14;UBERON:0000158,2.04e-14,14;UBERON:0004119,4.61e-13,160;UBERON:0000925,4.61e-13,160;UBERON:0006595,4.61e-13,160;UBERON:0000166,1.09e-09,22;UBERON:0000160,1.33e-08,17;UBERON:0001007,1.37e-08,145;UBERON:0001555,1.37e-08,145;UBERON:0007026,1.37e-08,145;UBERON:0000161,1.96e-08,36;UBERON:0000305,2.66e-08,7;UBERON:0001004,2.70e-08,74;UBERON:0005409,4.10e-08,25;UBERON:0000165,4.29e-08,29;UBERON:0000930,4.29e-08,29;UBERON:0000033,7.19e-08,56;UBERON:0001949,8.61e-08,3;UBERON:0003124,9.71e-08,7;UBERON:0002108,1.07e-07,4;UBERON:0000920,1.82e-07,3;UBERON:0000478,1.93e-07,24;UBERON:0004921,1.94e-07,118;UBERON:0004871,3.41e-07,8;UBERON:0003102,6.34e-07,99;UBERON:0004923,6.84e-07,66 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,2.62129646556207,3.69273769519835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0.447830948479849,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0.398927315243264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.351339142772504,0,1.09288586487763,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.15065156704198,4.63668405004419,4.87567812161307,0.487894824518382,1.32529768321485,0.929551542956147,0.725627385107593,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0.343135620597051,6.91426798074341,0,1.3068766413512,1.94435734832912,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0.234004265139238,0,5.62403003920662,10.2469098201304,6.66342957039216,1.52249488594842,1.74380363108377,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0.909382714338778,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,4.21063587636898,4.9723734025384,0,0,0,1.35359883872224,0.693138033939733,0,1.46139224653261,1.26661954671451,0,0,0,0,0,0,0.509752546090077,1.66215201785745,0.223874754722178,0,0,0.256450125116389,0,0,0.721287081534056,0,0,6.3169209179579,2.60024098414608,0,0,0,0,0,0,0,0.0852266274161009,0,4.46269271474641,3.0750410778417,2.67986696238627,5.4625201661997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0.769776901804097,0.670302275535787,0,1.31801321087491,0.86101074534246,3.36942951335251,0.443430153536676,3.44585100310439,1.01489521846434,0,0,0.238231775457789,0.411362273086194,1.29694662238543,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,2.24568648489864,0.146508179271894,0,0,0,18.3833253248021,4.75143489332222,13.5150708923662,0,0,0,0,0,0,0.552567831062295,3.02319297425131,0,0,0,0.629078458031288,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0.61221999997337,0.724999575434793,0.568967241427498,2.54253650292766,4.72775363535873,0,0,0,0,0.120596438625408,0,0,0,0,0,2.23077990845765,1.30815439456455,0,7.60860884480598,0.628303510868405,4.67183699264635,6.38002319463839,1.55715908783166,6.39641731222362,0,0,0.166211681900156,0.676786981851542,0.588187602953219,0.335643173951685,0,0,0.210998064528027,0.163232808159148,0.848118428603645,0,2.98578579323551,12.0302287724541,7.94339188413713,0,0,0,0.067401132980677,0,0,0,0.782658475728359,0,0.394584402849391,0,0,0.063186579628488,0,0.518440956986236,0,0,0,0,0.284609546029793,0,2.08271686002157,3.23374911467446,0.870592065804026,0.17472666824203,0,0,0,0,5.62536295632833,0,1.12990370390266,0,0,0,0.977756913674015,1.68333522528221,0.213452994739353,0,0.864542502924636,0.687219576995494,0,0,0.372757606696298,4.47818665771911,0,0,0,0.288950589901519,0,0,0,0,0,0,0.229160424011684,0,1.39775300349294,0,0.223171457441873,0.201550417460179,0,0,0.393915911536118,0.576911008668165,0.539228350833479,0.196854963029498,0,0,0,0.160753148465019,0.412618309791701,0,0,0,0,2.0126081255956,0.630445658393585,0.944182586429966,0.633602019116439,0.179287339332845,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,2.11444506695002,0.533937062838473,0.314408610199332,0,0,0,0,1.27668251554036,0,0,0,0,1.57054096250234,0,0,0,0,0,0,0.415045904808692,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0,0.406870733204662,0,0.107410557042488,0,0,0,0,0,0,0,0.857766365499703,0,0,0.231522474323834,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0.584580926518165,0.265729680626726,0.817826971279221,0,0,1.05656061679314,0,0.106691729694141,0,0,0,4.05650572386389,4.35454082023081,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,1.86480665151949,0.11796972334774,0.183428598521679,1.5018336599544,0,0,0,0.150420656698515,0,0.781514011233092,7.07148075099841,0,1.77427303460454,0,0,0,0,0,7.67560873600055,0.992422356778588,0,0.638812138197976,0,0,0,0,3.63679717666819,0,0,0,0.131545547125698,0.118193840883968,1.22354542081276,0.863424021355654,0.157115589916002,5.0448989396482,0.913158720509496,0,0.47775168788705,0,0,0,0,0,0.414432328326074,0.17071847709395,1.38251932362818,8.60454717640555,0,0,0,2.7492824225286,0,0,0,3.63155864376399,0.487671699929078,0,0,0,0.485710993059139,0,1.19370465096821,0,8.13211790680512,0,0,14.3543934080777,4.80831033108706,0,0,2.12108892391463,0,0,0,0,0.281951753939561,0.0644578879735772,0,0.535661815816973,0,2.96893056749923,2.19100916473955,8.25712710128173,0,0,0,0,5.81929524566941,0,0,0,0.126166424835079,0.655593431782173,0,1.32585478664576,0,1.28652859348783,0.50141507858475,0.0757786982182394,0,0,0,0.852935927603924,0,0.258355639344024,0.434523000071005,0,0.190941474834495,0.404234377916439,0.870866991587845,1.02669990325584,1.54909721933551,1.36272190246085,0.99798106963804,0.569822880276821,0.213454691755431,0,0,0,0.488965776731466,1.22068853494722,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0.245733936501509,0.697801167972428,2.62129646556207,3.69273769519835,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0.30120591877825,0.739508020333575,0,0,0,0,0,0,0.447830948479849,0,0.257575567634187,0.145398238779565,0,0,0,0,0,0.28769239232215,0,0,0,0,0,0.188242339542605,0,0,0.306083892370903,0,0,0,0.398927315243264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.16072558669708,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0.0945348171640679,0.221729397462564,0.351339142772504,0,1.09288586487763,1.85392221392215,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.31780417436063,0,1.3082821564276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.113432183160021,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,7.15065156704198,4.63668405004419,4.87567812161307,0.487894824518382,1.32529768321485,0.929551542956147,0.725627385107593,0.756962552626885,0.72995471815166,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.10689594688802,0.343135620597051,6.91426798074341,0,1.3068766413512,1.94435734832912,0,0,0,0,0.352226082707465,0,0,0,0,0,0,0.234004265139238,0,5.62403003920662,10.2469098201304,6.66342957039216,1.52249488594842,1.74380363108377,1.53353071666084,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.599837947092342,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30139853857622,0,0,0,0,0,1.65766205374414,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.431428401637234,0,0.909382714338778,1.66435439510497,0.907170879989041,0,0,0,0,0,0,0,0,0,0,0,0,0.241718899183244,4.21063587636898,4.9723734025384,0,0,0,1.35359883872224,0.693138033939733,0,1.46139224653261,1.26661954671451,0,0,0,0,0,0,0.509752546090077,1.66215201785745,0.223874754722178,0,0,0.256450125116389,0,0,0.721287081534056,0,0,6.3169209179579,2.60024098414608,0,0,0,0,0,0,0,0.0852266274161009,0,4.46269271474641,3.0750410778417,2.67986696238627,5.4625201661997,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179872457583315,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143411352204052,0,0,0,0,0,0,0,0.769776901804097,0.670302275535787,0,1.31801321087491,0.86101074534246,3.36942951335251,0.443430153536676,3.44585100310439,1.01489521846434,0,0,0.238231775457789,0.411362273086194,1.29694662238543,0,0,0,0,1.22520107990516,0,0,0,0,0,0,0,0,0,0,0,0,0.169291777801603,0,0,0,0,0,0,0,0,0.278406173895242,0,0,0,0,2.24568648489864,0.146508179271894,0,0,0,18.3833253248021,4.75143489332222,13.5150708923662,0,0,0,0,0,0,0.552567831062295,3.02319297425131,0,0,0,0.629078458031288,0.179021174675609,0,0.0986434056369336,0,0,0,0,0,0.260427761085233,0.61221999997337,0.724999575434793,0.568967241427498,2.54253650292766,4.72775363535873,0,0,0,0,0.120596438625408,0,0,0,0,0,2.23077990845765,1.30815439456455,0,7.60860884480598,0.628303510868405,4.67183699264635,6.38002319463839,1.55715908783166,6.39641731222362,0,0,0.166211681900156,0.676786981851542,0.588187602953219,0.335643173951685,0,0,0.210998064528027,0.163232808159148,0.848118428603645,0,2.98578579323551,12.0302287724541,7.94339188413713,0,0,0,0.067401132980677,0,0,0,0.782658475728359,0,0.394584402849391,0,0,0.063186579628488,0,0.518440956986236,0,0,0,0,0.284609546029793,0,2.08271686002157,3.23374911467446,0.870592065804026,0.17472666824203,0,0,0,0,5.62536295632833,0,1.12990370390266,0,0,0,0.977756913674015,1.68333522528221,0.213452994739353,0,0.864542502924636,0.687219576995494,0,0,0.372757606696298,4.47818665771911,0,0,0,0.288950589901519,0,0,0,0,0,0,0.229160424011684,0,1.39775300349294,0,0.223171457441873,0.201550417460179,0,0,0.393915911536118,0.576911008668165,0.539228350833479,0.196854963029498,0,0,0,0.160753148465019,0.412618309791701,0,0,0,0,2.0126081255956,0.630445658393585,0.944182586429966,0.633602019116439,0.179287339332845,0.575745591958336,0,0,0,0,0,0,0,0,0,0,0.293104467356165,0,0,0,0,2.11444506695002,0.533937062838473,0.314408610199332,0,0,0,0,1.27668251554036,0,0,0,0,1.57054096250234,0,0,0,0,0,0,0.415045904808692,0.124980407962107,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.300515217994437,0,0.406870733204662,0,0.107410557042488,0,0,0,0,0,0,0,0.857766365499703,0,0,0.231522474323834,0,0,0,0.219284049578707,0.176689145945881,0,0,0,0,0,0,0.584580926518165,0.265729680626726,0.817826971279221,0,0,1.05656061679314,0,0.106691729694141,0,0,0,4.05650572386389,4.35454082023081,0,0,0,0,0,0,0,0,0,0,0.80057074828547,0,0,0,0,0,0,0,0,0,0,1.86480665151949,0.11796972334774,0.183428598521679,1.5018336599544,0,0,0,0.150420656698515,0,0.781514011233092,7.07148075099841,0,1.77427303460454,0,0,0,0,0,7.67560873600055,0.992422356778588,0,0.638812138197976,0,0,0,0,3.63679717666819,0,0,0,0.131545547125698,0.118193840883968,1.22354542081276,0.863424021355654,0.157115589916002,5.0448989396482,0.913158720509496,0,0.47775168788705,0,0,0,0,0,0.414432328326074,0.17071847709395,1.38251932362818,8.60454717640555,0,0,0,2.7492824225286,0,0,0,3.63155864376399,0.487671699929078,0,0,0,0.485710993059139,0,1.19370465096821,0,8.13211790680512,0,0,14.3543934080777,4.80831033108706,0,0,2.12108892391463,0,0,0,0,0.281951753939561,0.0644578879735772,0,0.535661815816973,0,2.96893056749923,2.19100916473955,8.25712710128173,0,0,0,0,5.81929524566941,0,0,0,0.126166424835079,0.655593431782173,0,1.32585478664576,0,1.28652859348783,0.50141507858475,0.0757786982182394,0,0,0,0.852935927603924,0,0.258355639344024,0.434523000071005,0,0.190941474834495,0.404234377916439,0.870866991587845,1.02669990325584,1.54909721933551,1.36272190246085,0.99798106963804,0.569822880276821,0.213454691755431,0,0,0,0.488965776731466,1.22068853494722,0,0,0 | ||
|short_description=p6@DSC2 | |||
}} | }} |
Latest revision as of 04:41, 19 September 2015
Short description: | p6@DSC2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_6_at_DSC2_5end |
Coexpression cluster: | NA |
Association with transcript: | 72bp_to_ENST00000280904_5end |
EntrezGene: | DSC2 |
HGNC: | 3036 |
UniProt: | Q02487 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.97e-15 | 253 |
endo-epithelial cell | 2.35e-13 | 42 |
general ecto-epithelial cell | 3.47e-11 | 14 |
endodermal cell | 1.67e-09 | 58 |
epithelial cell of alimentary canal | 1.93e-08 | 20 |
extraembryonic cell | 4.63e-08 | 19 |
epithelial cell of Malassez | 4.79e-08 | 3 |
gingival epithelial cell | 8.61e-08 | 3 |
chorionic membrane mesenchymal stem cell | 1.82e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 2.04e-14 | 14 |
membranous layer | 2.04e-14 | 14 |
endoderm-derived structure | 4.61e-13 | 160 |
endoderm | 4.61e-13 | 160 |
presumptive endoderm | 4.61e-13 | 160 |
oral opening | 1.09e-09 | 22 |
intestine | 1.33e-08 | 17 |
digestive system | 1.37e-08 | 145 |
digestive tract | 1.37e-08 | 145 |
primitive gut | 1.37e-08 | 145 |
orifice | 1.96e-08 | 36 |
amnion | 2.66e-08 | 7 |
respiratory system | 2.70e-08 | 74 |
gastrointestinal system | 4.10e-08 | 25 |
mouth | 4.29e-08 | 29 |
stomodeum | 4.29e-08 | 29 |
head | 7.19e-08 | 56 |
gingival epithelium | 8.61e-08 | 3 |
chorion | 9.71e-08 | 7 |
small intestine | 1.07e-07 | 4 |
egg chorion | 1.82e-07 | 3 |
extraembryonic structure | 1.93e-07 | 24 |
subdivision of digestive tract | 1.94e-07 | 118 |
somatic layer of lateral plate mesoderm | 3.41e-07 | 8 |
surface structure | 6.34e-07 | 99 |
organ component layer | 6.84e-07 | 66 |