FFCP PHASE1:Hg19::chr18:28898087..28898106,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=1828 | |EntrezGene=1828 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3048 | |HGNC=3048 | ||
|TSSclassifier=strong | |||
|UniProt=Q02413 | |UniProt=Q02413 | ||
|association_with_transcript=35bp_to_ENST00000257192,NM_001942,uc002kwp.2_5end | |association_with_transcript=35bp_to_ENST00000257192,NM_001942,uc002kwp.2_5end | ||
|cluster_id=chr18:28898087..28898106,+ | |||
|coexpression_cluster_id=C68 | |coexpression_cluster_id=C68 | ||
|description=CAGE_peak_2_at_DSG1_5end | |description=CAGE_peak_2_at_DSG1_5end | ||
|id=chr18:28898087..28898106,+ | |id=chr18:28898087..28898106,+ | ||
|ontology_enrichment_celltype=CL:0000622!1.88e-18!5;CL:0000154!2.51e-15!6;CL:0002159!1.13e-12!13;CL:0002623!3.81e-12!3;CL:0002621!1.83e-11!3;CL:0000349!2.61e-11!3;CL:0002577!2.61e-11!3;CL:0000150!4.17e-10!9;CL:0001014!1.24e-08!2;CL:0001016!1.24e-08!2;CL:0000575!3.87e-08!2;CL:0000317!4.98e-08!2;CL:1000448!4.98e-08!2;CL:0002308!4.98e-08!2;CL:0002140!4.98e-08!2;CL:0002537!9.46e-08!5;CL:0002251!1.39e-07!21;CL:0000362!1.95e-07!8;CL:0002077!4.12e-07!33 | |ontology_enrichment_celltype=CL:0000622!1.88e-18!5;CL:0000154!2.51e-15!6;CL:0002159!1.13e-12!13;CL:0002623!3.81e-12!3;CL:0002621!1.83e-11!3;CL:0000349!2.61e-11!3;CL:0002577!2.61e-11!3;CL:0000150!4.17e-10!9;CL:0001014!1.24e-08!2;CL:0001016!1.24e-08!2;CL:0000575!3.87e-08!2;CL:0000317!4.98e-08!2;CL:1000448!4.98e-08!2;CL:0002308!4.98e-08!2;CL:0002140!4.98e-08!2;CL:0002537!9.46e-08!5;CL:0002251!1.39e-07!21;CL:0000362!1.95e-07!8;CL:0002077!4.12e-07!33 | ||
|ontology_enrichment_celltype_v019=CL:0000622;2.80e-20;5!CL:0002623;1.03e-19;3!CL:0000154;6.16e-17;6!CL:0001014;1.12e-13;2!CL:0001016;1.12e-13;2!CL:0002537;1.38e-12;5!CL:0000349;1.00e-11;19!CL:0000150;2.38e-11;9!CL:0002577;4.09e-09;3!CL:0002621;6.30e-09;3!CL:0002251;1.38e-07;20!CL:0002159;3.42e-07;14 | |||
|ontology_enrichment_celltype_v019_2=CL:0000622,3.17e-20,5;CL:0002623,1.06e-19,3;CL:0000154,6.83e-17,6;CL:0001014,1.12e-13,2;CL:0001016,1.12e-13,2;CL:0002537,1.38e-12,5;CL:0000349,9.95e-12,19;CL:0000150,2.55e-11,9;CL:0002577,4.01e-09,3;CL:0002621,5.13e-09,3;CL:0002251,1.29e-07,20;CL:0002159,3.60e-07,14 | |||
|ontology_enrichment_development_v019=UBERON:0009143;1.11e-07;1!UBERON:0004874;1.11e-07;1!UBERON:0000358;1.53e-07;1 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019=DOID:3151;9.75e-08;1!DOID:3149;9.75e-08;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3151,9.44e-08,1;DOID:3149,9.44e-08,1 | |||
|ontology_enrichment_uberon=UBERON:0005631!5.88e-16!14;UBERON:0000158!5.88e-16!14;UBERON:0000166!1.04e-15!21;UBERON:0001987!1.70e-14!4;UBERON:0004340!1.70e-14!4;UBERON:0000165!1.45e-13!28;UBERON:0000930!1.45e-13!28;UBERON:0003124!7.91e-13!7;UBERON:0003408!2.07e-12!10;UBERON:0001949!1.83e-11!3;UBERON:0000478!4.89e-11!24;UBERON:0000161!2.36e-10!35;UBERON:0003102!2.39e-10!95;UBERON:0001044!4.00e-10!6;UBERON:0003293!4.00e-10!6;UBERON:0003294!4.00e-10!6;UBERON:0010047!4.00e-10!6;UBERON:0000167!4.00e-10!6;UBERON:0001444!6.42e-10!48;UBERON:0005795!2.26e-09!22;UBERON:0000078!2.75e-09!18;UBERON:0001042!6.88e-09!10;UBERON:0009145!6.88e-09!10;UBERON:0006562!4.75e-08!11;UBERON:0002419!4.98e-08!2;UBERON:0007771!4.98e-08!2;UBERON:0003297!4.98e-08!2;UBERON:0001821!4.98e-08!2;UBERON:0003487!4.98e-08!2;UBERON:0001820!4.98e-08!2;UBERON:0005089!4.98e-08!2;UBERON:0005088!4.98e-08!2;UBERON:0001004!1.04e-07!72;UBERON:0000995!1.56e-07!21;UBERON:0003975!3.82e-07!22 | |ontology_enrichment_uberon=UBERON:0005631!5.88e-16!14;UBERON:0000158!5.88e-16!14;UBERON:0000166!1.04e-15!21;UBERON:0001987!1.70e-14!4;UBERON:0004340!1.70e-14!4;UBERON:0000165!1.45e-13!28;UBERON:0000930!1.45e-13!28;UBERON:0003124!7.91e-13!7;UBERON:0003408!2.07e-12!10;UBERON:0001949!1.83e-11!3;UBERON:0000478!4.89e-11!24;UBERON:0000161!2.36e-10!35;UBERON:0003102!2.39e-10!95;UBERON:0001044!4.00e-10!6;UBERON:0003293!4.00e-10!6;UBERON:0003294!4.00e-10!6;UBERON:0010047!4.00e-10!6;UBERON:0000167!4.00e-10!6;UBERON:0001444!6.42e-10!48;UBERON:0005795!2.26e-09!22;UBERON:0000078!2.75e-09!18;UBERON:0001042!6.88e-09!10;UBERON:0009145!6.88e-09!10;UBERON:0006562!4.75e-08!11;UBERON:0002419!4.98e-08!2;UBERON:0007771!4.98e-08!2;UBERON:0003297!4.98e-08!2;UBERON:0001821!4.98e-08!2;UBERON:0003487!4.98e-08!2;UBERON:0001820!4.98e-08!2;UBERON:0005089!4.98e-08!2;UBERON:0005088!4.98e-08!2;UBERON:0001004!1.04e-07!72;UBERON:0000995!1.56e-07!21;UBERON:0003975!3.82e-07!22 | ||
|ontology_enrichment_uberon_v019=UBERON:0000165;3.75e-13;28!UBERON:0000478;2.92e-12;24!UBERON:0000161;3.43e-11;19!UBERON:0000166;3.43e-11;19!UBERON:0001041;3.72e-11;14!UBERON:0005631;8.20e-11;10!UBERON:0000158;8.20e-11;10!UBERON:0001044;4.01e-10;6!UBERON:0003293;4.01e-10;6!UBERON:0003294;4.01e-10;6!UBERON:0010047;4.01e-10;6!UBERON:0003408;4.01e-10;6!UBERON:0000167;4.01e-10;6!UBERON:0001723;1.04e-09;3!UBERON:0001033;1.04e-09;3!UBERON:0000305;4.02e-09;7!UBERON:0001949;6.30e-09;3!UBERON:0007029;5.58e-08;1!UBERON:0005795;7.26e-08;1!UBERON:0000989;1.11e-07;1!UBERON:0008811;1.11e-07;1!UBERON:0000014;1.95e-07;4!UBERON:0002372;2.62e-07;1!UBERON:0001961;2.62e-07;1!UBERON:0001744;2.62e-07;1!UBERON:0001042;2.62e-07;1!UBERON:0001735;2.62e-07;1!UBERON:0001987;4.83e-07;4!UBERON:0001003;7.56e-07;15!UBERON:0007376;7.56e-07;15 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000166,4.30e-17,22;UBERON:0005631,4.11e-16,14;UBERON:0000158,4.11e-16,14;UBERON:0000165,1.09e-12,29;UBERON:0000930,1.09e-12,29;UBERON:0000478,2.87e-12,24;UBERON:0001044,4.07e-10,6;UBERON:0003293,4.07e-10,6;UBERON:0003294,4.07e-10,6;UBERON:0010047,4.07e-10,6;UBERON:0000167,4.07e-10,6;UBERON:0000161,5.33e-10,36;UBERON:0001723,1.04e-09,3;UBERON:0001033,1.04e-09,3;UBERON:0010056,1.04e-09,3;UBERON:0003102,1.44e-09,99;UBERON:0000305,4.02e-09,7;UBERON:0001949,5.13e-09,3;UBERON:0001444,7.03e-09,49;UBERON:0003124,1.27e-08,7;UBERON:0000153,2.76e-08,62;UBERON:0007811,2.76e-08,62;UBERON:0004871,4.92e-08,8;UBERON:0007029,5.58e-08,1;UBERON:0000989,1.15e-07,1;UBERON:0008811,1.15e-07,1;UBERON:0006258,1.15e-07,1;UBERON:0005876,1.15e-07,1;UBERON:0004874,1.15e-07,1;UBERON:0000033,1.36e-07,56;UBERON:0000014,1.92e-07,4;UBERON:0002372,2.63e-07,1;UBERON:0001961,2.63e-07,1;UBERON:0001744,2.63e-07,1;UBERON:0001735,2.63e-07,1;UBERON:0005795,4.75e-07,22;UBERON:0001987,4.76e-07,4;UBERON:0004340,4.76e-07,4;UBERON:0001003,7.80e-07,15;UBERON:0007376,7.80e-07,15;UBERON:0007383,7.80e-07,15 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,1.90922284413584,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,6.36551655370028,0,3.11639814476056,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850650583454319,0,0,0,0,0,0.621984346622316,0.144119953416961,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.45629628603267,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,132.503189029418,17.223951488293,112.420816968319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.831902279601,13.0815439456455,0,0,0,0,21.3730777020386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.72901148395775,0,2.71176888936639,0,0,0,0,0,0,0,0,5.8413664044617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.27450393947851,13.9284351820431,0,9.39217125277945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,8.435590032618,0,0,0,0,0,0,0.887023701626388,0,0,0,0,0,0,0.078493092850514,0,0.560544326627578,0,0,0,0,0,0,0,0,2.48659396995644,9.2187977630733,24.8853478253073,0,0,0,0,0,0,0,0,0,0,0,0,0,34.971191500258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0.581300188524055,0.248298857183432,0,0,0,52.2520194952707,10.2669990325584,1.27968900727716,0.430333232356058,0,0,0,0,0,4.69281884806909,0.488965776731466,15.8689509543138,0,0,0 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.309632246632152,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0654895377488563,0.728590576585084,2.22470665670658,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.93260853163297,1.90922284413584,0.860413786167011,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26755034821831,0,0,0,0,0,6.36551655370028,0,3.11639814476056,0.370353780634118,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.850650583454319,0,0,0,0,0,0.621984346622316,0.144119953416961,0.50496973370552,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,5.45629628603267,1.66435439510497,0.30239029332968,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.14853107599234,0.650060246036521,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0962221127255121,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,132.503189029418,17.223951488293,112.420816968319,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,35.831902279601,13.0815439456455,0,0,0,0,21.3730777020386,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.802577647298789,0,0,0,0,0,0,0,0.063186579628488,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.72901148395775,0,2.71176888936639,0,0,0,0,0,0,0,0,5.8413664044617,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,4.27450393947851,13.9284351820431,0,9.39217125277945,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.548257766857182,8.435590032618,0,0,0,0,0,0,0.887023701626388,0,0,0,0,0,0,0.078493092850514,0,0.560544326627578,0,0,0,0,0,0,0,0,2.48659396995644,9.2187977630733,24.8853478253073,0,0,0,0,0,0,0,0,0,0,0,0,0,34.971191500258,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.0661699095049,0,0.581300188524055,0.248298857183432,0,0,0,52.2520194952707,10.2669990325584,1.27968900727716,0.430333232356058,0,0,0,0,0,4.69281884806909,0.488965776731466,15.8689509543138,0,0,0 | ||
|short_description=p2@DSG1 | |short_description=p2@DSG1 | ||
}} | }} |
Latest revision as of 04:50, 19 September 2015
Short description: | p2@DSG1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_DSG1_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | 35bp_to_ENST00000257192, NM_001942, uc002kwp.2_5end |
EntrezGene: | DSG1 |
HGNC: | 3048 |
UniProt: | Q02413 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
acinar cell | 3.17e-20 | 5 |
acinar cell of salivary gland | 1.06e-19 | 3 |
protein secreting cell | 6.83e-17 | 6 |
CD1a-positive Langerhans cell | 1.12e-13 | 2 |
immature CD1a-positive Langerhans cell | 1.12e-13 | 2 |
amnion mesenchymal stem cell | 1.38e-12 | 5 |
extraembryonic cell | 9.95e-12 | 19 |
glandular epithelial cell | 2.55e-11 | 9 |
placental epithelial cell | 4.01e-09 | 3 |
gingival epithelial cell | 5.13e-09 | 3 |
epithelial cell of alimentary canal | 1.29e-07 | 20 |
general ecto-epithelial cell | 3.60e-07 | 14 |
Ontology term | p-value | n |
---|---|---|
skin squamous cell carcinoma | 9.44e-08 | 1 |
keratoacanthoma | 9.44e-08 | 1 |