FFCP PHASE1:Hg19::chr18:29077868..29077914,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr18:29077868..29077914,+ to FFCP PHASE1:Hg19::chr18:29077868..29077914,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=1829 | |EntrezGene=1829 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=3049 | |HGNC=3049 | ||
|TSSclassifier=strong | |||
|UniProt=Q14126 | |UniProt=Q14126 | ||
|association_with_transcript=-112bp_to_ENST00000261590,NM_001943,uc002kwu.3_5end | |||
|cluster_id=chr18:29077868..29077914,+ | |||
|coexpression_cluster_id=C2456 | |||
|description=CAGE_peak_3_at_DSG2_5end | |||
|id=chr18:29077868..29077914,+ | |||
|ontology_enrichment_celltype=CL:0000066!6.47e-17!254;CL:0000223!7.06e-09!59;CL:0002076!1.42e-07!43;CL:0000039!2.25e-07!7;CL:0000586!2.25e-07!7 | |||
|ontology_enrichment_celltype_v019=CL:0002322;1.83e-15;5!CL:0000039;1.01e-14;7!CL:0000586;1.01e-14;7!CL:0000064;1.49e-08;3!CL:0000067;1.49e-08;3!CL:0005012;1.49e-08;3!CL:0002304;1.49e-08;3!CL:0002621;1.49e-08;3!CL:0000075;8.24e-07;27!CL:0000306;9.04e-07;4!CL:0002222;9.04e-07;4!CL:0002224;9.04e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,1.41e-15,5;CL:0000039,4.06e-15,7;CL:0000586,4.06e-15,7;CL:0000066,9.05e-12,253;CL:0000064,1.82e-08,3;CL:0000067,1.82e-08,3;CL:0005012,1.82e-08,3;CL:0002304,1.82e-08,3;CL:0002621,1.87e-08,3;CL:0000223,2.32e-07,58;CL:0000306,5.58e-07,4;CL:0002222,5.58e-07,4;CL:0002224,5.58e-07,4;CL:0000075,7.03e-07,27 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!4.15e-13!106;DOID:0050687!3.72e-09!143 | |||
|ontology_enrichment_disease_v019=DOID:3095;6.17e-09;22!DOID:2994;6.17e-09;22 | |||
|ontology_enrichment_disease_v019_2=DOID:3095,3.69e-09,22;DOID:2994,3.69e-09,22;DOID:305,3.18e-08,106;DOID:0050687,7.64e-07,143 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.16e-11!169;UBERON:0000925!3.16e-11!169;UBERON:0006595!3.16e-11!169;UBERON:0005911!1.65e-08!82;UBERON:0001048!2.08e-08!168;UBERON:0000466!3.34e-08!126;UBERON:0001007!6.28e-08!155;UBERON:0001555!6.28e-08!155;UBERON:0007026!6.28e-08!155;UBERON:0004921!1.08e-07!129;UBERON:0004185!1.08e-07!129;UBERON:0002553!1.88e-07!70;UBERON:0000464!2.73e-07!104;UBERON:0000077!5.05e-07!130 | |||
|ontology_enrichment_uberon_v019=UBERON:0007625;4.16e-11;11!UBERON:0000488;7.58e-11;4!UBERON:0001778;1.49e-08;3!UBERON:0001949;1.49e-08;3!UBERON:0001775;1.49e-08;3!UBERON:0001801;1.66e-08;14!UBERON:0002203;3.05e-07;6!UBERON:0001768;3.05e-07;6!UBERON:0002200;3.05e-07;6!UBERON:0010077;9.04e-07;4!UBERON:0005389;9.04e-07;4!UBERON:0000484;9.04e-07;4!UBERON:0000965;9.04e-07;4!UBERON:0001803;9.04e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007625,4.50e-11,11;UBERON:0000488,1.61e-10,4;UBERON:0001801,1.76e-08,14;UBERON:0001778,1.82e-08,3;UBERON:0001775,1.82e-08,3;UBERON:0001949,1.87e-08,3;UBERON:0003929,5.33e-08,54;UBERON:0002203,4.96e-07,6;UBERON:0001768,4.96e-07,6;UBERON:0002200,4.96e-07,6;UBERON:0010077,5.58e-07,4;UBERON:0005389,5.58e-07,4;UBERON:0000484,5.58e-07,4;UBERON:0002546,5.58e-07,4;UBERON:0000965,5.58e-07,4;UBERON:0001803,5.58e-07,4;UBERON:0003073,5.58e-07,4;UBERON:0005426,5.58e-07,4 | |||
|phase1_expression=0.181678379270557,0,0,0,0,0,0,0,0,0,1.39560233594486,0.218441372130172,0.263766978228454,0,0.662794751455832,0,0,0,0,0.246242116153576,0.204000691244253,0.313454721478088,0.286235987131057,0.684372125364421,1.12988375635323,0.687720651731561,0.410502947249729,0.629686250509434,0,0,0,0,0,0,0,0,0.880801318004542,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.199463657621632,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.263384084775077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,1.60709189178915,1.10864698731282,1.31752178539689,0.130979075497713,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.264818361626438,0,0,0.560677600142307,0,0.24666754841716,0,0.134710672069688,0,0.151357427644931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.226864366320042,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.15956511897978,1.36373060295417,1.43402297694502,2.92736894711029,5.03613119621644,4.18298194330266,2.798848485415,3.02785021050754,5.83963774521328,0,0,0,0,0,0.118306800039844,0.168584690078102,0.723033089650446,0,0.435758888184812,0,0.134831308160164,0.196221465125346,0.38474715694639,0,0,0,0,1.26755034821831,0.982827216677626,0,0,0.737930631258681,1.02940686179115,0.109750285408626,0,0.402115889646523,0.555530670951178,0,0,1.44331342025273,2.08674728955138,1.99594780200897,0,0,0,0,0,0,0,0,0.93733833986777,0.839910640994298,0.567100388969546,0.268675568108545,0,0,0,0,0,0,0,0,0,0,0,0.102827492703324,0,0.285826432630578,0.224262168690721,0,0.36669142910475,0.129271715757778,0,0,0,0,0.514414748524284,0,0,0.142977993658148,0,0.823240336780769,0.325736184293735,0,0,0.904318131178758,1.74306691720059,0.199945982364114,0,0,0,0,0,0,0,0,0,0,0,0,0,0.254094624222463,1.30139853857622,0,0.670065061337395,0,0,0,0,0.613457458595699,0.500170521059677,0.542530047399471,0,0,0,0,0,0,1.03473071292505,0,0,0,0,0,0,0,0,0.606255142892519,0,0.30239029332968,0,0,0,0,0,0,0,0,0,0.0821271560138091,0,0,0.120859449591622,0.802025881213139,0.368323955743585,0.114814448164607,0,0,0,2.00239876471478,0.784349769176855,0,2.00548094896464,0,0,1.0795795805107,0,0.812839312631559,0,0.509752546090077,0.831076008928724,0.447749509444357,0,0,0.769350375349168,0,0.650756789328606,0.618246069886334,0,0,0.574265537996172,0.650060246036521,0,0.096670718292122,0.154048617114644,0.15350367472613,0.137836572484531,0.429680979473094,0,0.681813019328807,0,0.826424576804891,1.34533047155574,0.765676274967505,2.023155617111,0,0,0,0,0.532306030317022,0,0,0,0,0,0.190630193923825,0,0,0,0,0,0,0.117812402345686,0,0,0,0,0.487426979262569,0,0,0,0,0,0,0,0,0,0.202910376962704,0,0,0.573645408816206,0.0982490410131212,0.7133421029625,0,0,0,0,0,0.192444225451024,0,2.17781969722645,0.659006605437454,0.43050537267123,1.68471475667626,0.443430153536676,0.229723400206959,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0711418433484141,0.159426272728822,0,0,0,0,0,0,0,0,0,0,0,0.425846237690326,0,0,0,0.166849141711909,0,0,0,0,0,0,0,0.293016358543788,0,0,0.284136146806413,0.71623345421307,0,0.307160702099232,0,0,0,0,0.211125408127993,0.19924798825107,0,6.55025144421118,0,0.492339221844278,0,1.88723537409386,0.179021174675609,0,0.0986434056369336,0,0,0,0.0927680981618513,0,0,0.0874599999961957,0.724999575434793,0.455173793141999,0.254253650292766,0.945550727071745,0.344743373241465,0,0,0,0,0,0,0,0.219385397153973,0.10893846351899,0,0,0,7.60860884480598,5.56497395340587,2.39024218228418,0.31900115973192,0.915975934018623,1.5991043280559,0,0,0,2.03036094555463,1.56850027454192,0.335643173951685,0.189753732724185,0,0.421996129056054,0.163232808159148,0.282706142867882,5.62610463329437,0,0.353830258013357,0,0,0,0,0.337005664903385,0,0,0,0.782658475728359,0,0,1.20990716048664,0,0,0.60129367765797,0.207376382794494,0.664653872707185,0,0.313932918407225,0,1.99226682220855,0,0.867798691675654,0,0.174118413160805,0.17472666824203,0.343972064943233,0.0967563312890851,0.146178634172371,0.0821154570532092,0,0,0,0.137041924646751,0,0,0.195551382734803,1.68333522528221,0.213452994739353,0.19980960958213,1.00863292007874,3.20702469264564,1.71594997861965,0.14405479798815,0.49701014226173,0.471388069233591,0,0.209205692624666,0,0.577901179803038,0,0,0,0,0,0,0.229160424011684,0,0.599037001496973,0,0.446342914883745,0.739018197353989,0,3.49487848582361,2.52106183383116,2.06039645952916,2.2243169471881,0,0.338693328263138,0,0.272406812223151,3.69732241469544,4.12618309791701,3.32352270423348,0,0,0,0,0.630445658393585,1.10154635083496,0.422401346077626,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.88195521672762,0,0.106787412567695,0.157204305099666,0.414239055347196,0,0,0.243585196761792,0,0,0.5013797880454,0,0.327872630709804,0.785270481251171,0,0,0,0.573409195690071,0.221858103073705,0.0620964029413835,0.138348634936231,0,0,0,0,0,0.579684114443301,0,0,0,0,0,0,0,0,0,0,0.159296767163702,0,0.155262956876259,0,0,1.04349012362347,0.150257608997218,1.14241563650639,2.44122439922797,0.181848659202559,0.859284456339908,0,0.398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| ||
|short_description=p3@DSG2 | |||
}} | }} |
Latest revision as of 05:06, 19 September 2015
Short description: | p3@DSG2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_DSG2_5end |
Coexpression cluster: | C2456_hepatoblastoma_iPS_choriocarcinoma_colon_HES3GFP_argyrophil_H9 |
Association with transcript: | -112bp_to_ENST00000261590, NM_001943, uc002kwu.3_5end |
EntrezGene: | DSG2 |
HGNC: | 3049 |
UniProt: | Q14126 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 1.41e-15 | 5 |
germ line cell | 4.06e-15 | 7 |
germ cell | 4.06e-15 | 7 |
epithelial cell | 9.05e-12 | 253 |
ciliated cell | 1.82e-08 | 3 |
ciliated epithelial cell | 1.82e-08 | 3 |
multi-ciliated epithelial cell | 1.82e-08 | 3 |
non-pigmented ciliary epithelial cell | 1.82e-08 | 3 |
gingival epithelial cell | 1.87e-08 | 3 |
endodermal cell | 2.32e-07 | 58 |
crystallin accumulating cell | 5.58e-07 | 4 |
vertebrate lens cell | 5.58e-07 | 4 |
lens epithelial cell | 5.58e-07 | 4 |
columnar/cuboidal epithelial cell | 7.03e-07 | 27 |
Ontology term | p-value | n |
---|---|---|
pigment epithelium of eye | 4.50e-11 | 11 |
atypical epithelium | 1.61e-10 | 4 |
anterior segment of eyeball | 1.76e-08 | 14 |
ciliary epithelium | 1.82e-08 | 3 |
ciliary body | 1.82e-08 | 3 |
gingival epithelium | 1.87e-08 | 3 |
gut epithelium | 5.33e-08 | 54 |
vasculature of eye | 4.96e-07 | 6 |
uvea | 4.96e-07 | 6 |
vasculature of head | 4.96e-07 | 6 |
cuboidal epithelium | 5.58e-07 | 4 |
transparent eye structure | 5.58e-07 | 4 |
simple cuboidal epithelium | 5.58e-07 | 4 |
cranial placode | 5.58e-07 | 4 |
lens of camera-type eye | 5.58e-07 | 4 |
epithelium of lens | 5.58e-07 | 4 |
lens placode | 5.58e-07 | 4 |
lens vesicle | 5.58e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
germ cell and embryonal cancer | 3.69e-09 | 22 |
germ cell cancer | 3.69e-09 | 22 |
carcinoma | 3.18e-08 | 106 |
cell type cancer | 7.64e-07 | 143 |