FFCP PHASE1:Hg19::chr17:27045427..27045451,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=83871 | |EntrezGene=83871 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=16519 | |HGNC=16519 | ||
|TSSclassifier=strong | |||
|UniProt=Q9BZG1,C9JBG0 | |UniProt=Q9BZG1,C9JBG0 | ||
|association_with_transcript=0bp_to_ENST00000301043,ENST00000412625_5end | |association_with_transcript=0bp_to_ENST00000301043,ENST00000412625_5end | ||
|cluster_id=chr17:27045427..27045451,- | |||
|coexpression_cluster_id=C49 | |||
|description=CAGE_peak_7_at_RAB34_5end | |description=CAGE_peak_7_at_RAB34_5end | ||
|id=chr17:27045427..27045451,- | |id=chr17:27045427..27045451,- | ||
|ontology_enrichment_celltype=CL:0000055!2.96e-15!180;CL:0000183!2.96e-11!59;CL:0000393!4.52e-10!60;CL:0000211!4.52e-10!60;CL:0000187!1.72e-09!54;CL:0000680!1.89e-09!57;CL:0000056!1.89e-09!57;CL:0000355!1.89e-09!57;CL:0000192!2.44e-09!42;CL:0000514!2.44e-09!42;CL:0000359!9.91e-09!32 | |ontology_enrichment_celltype=CL:0000055!2.96e-15!180;CL:0000183!2.96e-11!59;CL:0000393!4.52e-10!60;CL:0000211!4.52e-10!60;CL:0000187!1.72e-09!54;CL:0000680!1.89e-09!57;CL:0000056!1.89e-09!57;CL:0000355!1.89e-09!57;CL:0000192!2.44e-09!42;CL:0000514!2.44e-09!42;CL:0000359!9.91e-09!32 | ||
|ontology_enrichment_celltype_v019=CL:0002322;3.75e-11;5!CL:0000359;1.05e-08;32!CL:0000192;5.57e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002322,3.99e-11,5;CL:0000359,5.18e-09,32;CL:0000192,9.26e-09,43;CL:0000514,9.26e-09,43;CL:0000393,1.05e-08,61;CL:0000211,1.05e-08,61;CL:0000680,5.01e-07,58;CL:0000056,5.01e-07,58;CL:0000355,5.01e-07,58;CL:0000187,7.65e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000514;5.57e-08;43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000914!2.99e-10!83;UBERON:0002329!2.99e-10!83;UBERON:0003077!2.99e-10!83;UBERON:0003059!2.99e-10!83;UBERON:0007282!2.99e-10!83;UBERON:0009618!2.99e-10!83;UBERON:0007285!2.99e-10!83;UBERON:0001134!6.33e-09!61;UBERON:0002036!6.33e-09!61;UBERON:0003082!6.33e-09!61;UBERON:0002385!7.87e-09!63;UBERON:0001015!7.87e-09!63;UBERON:0000383!7.87e-09!63;UBERON:0004290!6.38e-08!70;UBERON:0000486!5.44e-07!82;UBERON:0001637!7.67e-07!42;UBERON:0003509!7.67e-07!42;UBERON:0004572!7.67e-07!42 | |ontology_enrichment_uberon=UBERON:0000914!2.99e-10!83;UBERON:0002329!2.99e-10!83;UBERON:0003077!2.99e-10!83;UBERON:0003059!2.99e-10!83;UBERON:0007282!2.99e-10!83;UBERON:0009618!2.99e-10!83;UBERON:0007285!2.99e-10!83;UBERON:0001134!6.33e-09!61;UBERON:0002036!6.33e-09!61;UBERON:0003082!6.33e-09!61;UBERON:0002385!7.87e-09!63;UBERON:0001015!7.87e-09!63;UBERON:0000383!7.87e-09!63;UBERON:0004290!6.38e-08!70;UBERON:0000486!5.44e-07!82;UBERON:0001637!7.67e-07!42;UBERON:0003509!7.67e-07!42;UBERON:0004572!7.67e-07!42 | ||
|ontology_enrichment_uberon_v019=UBERON:0004573;2.07e-07;33!UBERON:0004571;2.07e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004573,1.00e-08,33;UBERON:0004571,1.00e-08,33;UBERON:0001637,5.37e-08,42;UBERON:0003509,5.37e-08,42;UBERON:0004572,5.37e-08,42;UBERON:0001134,4.77e-07,62;UBERON:0002036,4.77e-07,62;UBERON:0003082,4.77e-07,62;UBERON:0007524,7.80e-07,73;UBERON:0007503,8.33e-07,78 | |||
|phase1_expression=0,0.642301571672949,0.845726424575827,0,0.893922188854576,0,0,0,0.261185628199839,0.982935746006035,1.39560233594486,0.436882744260345,0,1.11389717664042,0.662794751455832,1.34465029290355,3.01347264011988,0,1.46379839637152,1.47745269692145,1.42800483870977,1.25381888591235,0.85870796139317,0.547497700291537,1.00434111675842,0.534893840235659,0.164201178899891,0.0787107813136792,0.393364276848904,0.383829398097213,0,0,0.6024118375565,0.369754010166788,0,0,1.76160263600908,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.612167784741805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.112328631146495,0,0,0,0,0,0,0,0,0,0,0.574752439954483,0,0,0,0,0,1.32171328579026,0,0.263384084775077,0,0,0,0.334372990781356,0,0,0,0,0,0,0,0.25618263945135,0.130059347559878,0.164437904603676,0.276350017785848,0,0,0.267540828089713,0,0,0,0,0,0.318565414324097,0,0,0,0,0,0,0,0,0,0.144824403882799,0,2.68280343881454,0.639312809217652,0,0.50133791063589,0.579386075843295,0,0,0.945348171640679,1.99556457716308,1.49319135678314,0.261958150995425,0,0,0,0.174129737299267,0.398873881556595,0.238490624305342,0,0.371457501329565,0,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,1.62028389576352,0.0892997282840798,0.22452937262617,0,0,0,0,0,0,0,1.49091585508596,0.633152558322899,0.132409180813219,0.573673241497627,0.354668382198357,0,0,1.2333377420858,0.311211035399766,0.538842688278752,0,1.66493170409425,1.72852777344,0,0.312160076830321,0,0.149448680551801,0,0.161872944368132,0.421352420106746,0,0.245668634623536,0.309977343527296,0,0.741800787835671,0,2.15585442544872,0.168336113954066,0.375355559615893,0.277064115484183,0.877955241761676,1.5324389789951,0.600952235626387,1.13432183160021,0.538168907066586,0.213557388818567,0.423863802319124,0.600182192168805,0.309157587715317,0.515281080091258,0.558350568994769,0.168776332241266,0.292311015483596,1.26216887122057,0.184099797284599,0.484938170456436,0,0.201504196455281,0.339121184620975,0.193260853163297,0,0,6.09868530647977,4.63854189125198,6.50686080069303,4.14644220061482,7.82194637714448,2.91981887260664,3.12899064659632,0,0,0,1.44375896333917,0.236613600079688,0.168584690078102,0.964044119533928,0.220587945464788,0,0.237270619111097,0.539325232640658,0,0,0,0,0.8231480226628,0,0,0,0,0,0,0.343135620597051,0.109750285408626,0,0.100528972411631,0.0925884451585296,0,1.03993478527958,0,0.115930404975077,0.70445216541493,0.144366447761074,0.462985512576611,0,0,0,0.492434012174795,0,0,0.93733833986777,0.16798212819886,0.141775097242386,0.0895585227028483,0,0,0,0.44024217006613,0.207328115540772,0.576479813667846,0.37872730027914,0.126995788584338,0.763976851116555,0,1.71072446022705,0,0,0,0.448524337381443,2.61576041299968,0.7333828582095,0.646358578788889,3.57656445851882,0,0.531876233169741,0,1.80045161983499,0,1.5985330740966,0,0.542621605391443,0.823240336780769,0,0.355391948742546,0.791951872933429,0.301439377059586,0.871533458600294,0.099972991182057,0,0.502257091432126,0,0.239624855491583,2.29723871668228,0,0.289562613335158,1.02738161275192,0,0,0,0,0.128343036279748,0,0,0,0.167516265334349,0,0,0,0,1.34960640891054,1.00034104211935,0,0.415941723061614,0.535286966391485,0.315404830067869,1.17141414992713,0.601892199455438,2.27407504055985,0,1.99267679560631,0.921845842708516,0.347534457872331,1.95801157462741,2.05886054286514,0,0,0.106727557803444,0,0,0.907170879989041,0.248107807818777,0.61384789315225,0.280660094433074,0.384417447767103,0,0.321707842287215,0,0.616838775210622,0.355123450626254,0.164254312027618,1.03850885836724,0.348631135379878,0,0,0,0.114814448164607,0.182091168006717,1.31124414959424,0,0.0770153371044148,0.784349769176855,0,0.105551628892876,0,0.170093705276516,0,0,0.812839312631559,5.51858751240339,0,0,0.447749509444357,0.219259876645935,0,0.256450125116389,1.96808787419823,0,0.103041011647722,0.640986253728404,0.165018999841176,0,0.650060246036521,1.6068392984416,0.193341436584244,0.616194468458578,0,0.275673144969061,0.859361958946189,0.145016693914229,0.340906509664404,0.890320356467374,0,0.192190067365106,0.255225424989168,0,0.464845549297286,0.31481234683064,1.3940745403212,0,1.06461206063404,0,1.66791797193528,0.858749320451947,0,0.316379424718726,0.762520775695299,1.02359116524534,1.28381696410176,1.59101623962968,2.35484592059769,0.359744915166629,0.54907405947211,0.117812402345686,1.61745985258653,3.17020642346017,0.842516912477962,0,0.487426979262569,1.05650146756755,0.409499734223957,0.848432591722276,1.13008116620243,1.10273068709225,6.6343897524122,3.5076070820301,0.578775534266688,0,0.405820753925408,0.92947049429925,0.563391205064483,0.286822704408103,0.0982490410131212,0.7133421029625,1.77380532035299,0.422215270595328,0.658589785919804,0.75894634753143,1.39973888097993,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.99107399156925,3.84991942105343,0.490080431962063,0,0.721346064882224,1.92082977040718,0,0.997896857164083,0,0.635020748171649,0.649243880549111,2.52717460302113,2.28234679033192,0,0,2.03150133361924,0.321176150207399,0.201799707191048,0,0,0,0,0,0,0,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| ||
|short_description=p7@RAB34 | |short_description=p7@RAB34 | ||
}} | }} |
Latest revision as of 07:10, 19 September 2015
Short description: | p7@RAB34 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_RAB34_5end |
Coexpression cluster: | C49_H9_iPS_testicular_HES3GFP_teratocarcinoma_hepatoblastoma_choriocarcinoma |
Association with transcript: | 0bp_to_ENST00000301043, ENST00000412625_5end |
EntrezGene: | RAB34 |
HGNC: | 16519 |
UniProt: | Q9BZG1C9JBG0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
embryonic stem cell | 3.99e-11 | 5 |
vascular associated smooth muscle cell | 5.18e-09 | 32 |
smooth muscle cell | 9.26e-09 | 43 |
smooth muscle myoblast | 9.26e-09 | 43 |
electrically responsive cell | 1.05e-08 | 61 |
electrically active cell | 1.05e-08 | 61 |
muscle precursor cell | 5.01e-07 | 58 |
myoblast | 5.01e-07 | 58 |
multi-potent skeletal muscle stem cell | 5.01e-07 | 58 |
muscle cell | 7.65e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
systemic artery | 1.00e-08 | 33 |
systemic arterial system | 1.00e-08 | 33 |
artery | 5.37e-08 | 42 |
arterial blood vessel | 5.37e-08 | 42 |
arterial system | 5.37e-08 | 42 |
skeletal muscle tissue | 4.77e-07 | 62 |
striated muscle tissue | 4.77e-07 | 62 |
myotome | 4.77e-07 | 62 |
dense mesenchyme tissue | 7.80e-07 | 73 |
epithelial vesicle | 8.33e-07 | 78 |