FFCP PHASE1:Hg19::chr1:8763181..8763189,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=473 | |EntrezGene=473 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=9965 | |HGNC=9965 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=88bp_to_ENST00000468247_5end | |association_with_transcript=88bp_to_ENST00000468247_5end | ||
|cluster_id=chr1:8763181..8763189,- | |||
|description=CAGE_peak_28_at_RERE_5end | |description=CAGE_peak_28_at_RERE_5end | ||
|id=chr1:8763181..8763189,- | |id=chr1:8763181..8763189,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019=CL:0002032;4.54e-07;1!CL:0000557;4.54e-07;1 | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0001041;2.25e-13;30!UBERON:0008425;3.51e-07;1 | |||
|ontology_enrichment_disease=DOID:0050687!3.55e-11!143;DOID:305!2.27e-09!106 | |||
|ontology_enrichment_disease_v019=DOID:0050615;1.28e-08;16!DOID:1325;1.22e-07;7!DOID:3904;1.22e-07;7!DOID:0050619;3.51e-07;1!DOID:1357;3.51e-07;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0050615,1.04e-08,16;DOID:1325,9.76e-08,7;DOID:3904,9.76e-08,7;DOID:305,2.82e-07,106;DOID:0050619,3.13e-07,1;DOID:1357,3.13e-07,1;DOID:3347,8.27e-07,1 | |||
|ontology_enrichment_uberon=UBERON:0001007!6.06e-07!155;UBERON:0001555!6.06e-07!155;UBERON:0007026!6.06e-07!155;UBERON:0004921!9.28e-07!129;UBERON:0004185!9.28e-07!129 | |||
|ontology_enrichment_uberon_v019=UBERON:0002048;1.74e-08;22!UBERON:0000117;1.74e-08;22!UBERON:0000171;1.74e-08;22!UBERON:0000170;1.74e-08;22!UBERON:0001764;3.51e-07;1!UBERON:0001825;3.51e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002048,1.55e-08,22;UBERON:0000117,1.55e-08,22;UBERON:0000171,1.55e-08,22;UBERON:0000170,1.55e-08,22;UBERON:0005597,1.55e-08,22;UBERON:0000118,1.55e-08,22;UBERON:0005177,1.18e-07,101;UBERON:0001764,3.13e-07,1;UBERON:0001825,3.13e-07,1;UBERON:0005178,4.92e-07,34;UBERON:0002224,4.92e-07,34;UBERON:0005181,8.28e-07,35;UBERON:0001041,9.37e-07,87 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0.697801167972428,0,0.527533956456907,0,0,0,0,0,0,0.123121058076788,0.204000691244253,0.313454721478088,0.572471974262113,0,0.502170558379211,0.152826811495903,0,0,0.786728553697808,0,0.154816123316076,0,0.30120591877825,0.369754010166788,0,0,0.293600439334847,0,0.200544447470142,0,0,0,0,0,0,0,0,0,0,0,0,0.236482229888585,0,0,1.35426486594342,0,0,0,0,0,0,0,0,0,0,0,0,0,0.521482918420201,0,0,0,0,0,0,0,0,0.150176892841506,0.16072558669708,0,0,0,0,0.546138611262131,0.889509253863555,0.426730222566507,0,0.574752439954483,0,0.954053754535364,0.569212969109448,0,0.382273228125229,2.64342657158052,2.24203425192614,0.263384084775077,0,0,0,0,0,0,0,0.222820913770347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12786256184353,0,0,0,0,0,0,0,0.263504357079378,0.261958150995425,0.364295288292542,0,0,0,0,0,0.571994910780128,0.371457501329565,0.596287222100115,0,0.347140501607594,0.56530794192401,0,0,0.835979866147242,0.258416759169329,0.35576626268671,1.00416183829401,0.805658634218294,0.760272105718513,0,0,0,0.267899184852239,0.22452937262617,1.35133776579987,0,0,0.732806975721629,0,0,0.436094052142534,0,0,0,0.286836620748814,0,0,0,0,0,0.134710672069688,0.163461903113459,0,0,0.234321431833797,0,0.570471821544449,0.149448680551801,0,0.323745888736263,0.280901613404497,0,0.122834317311768,0.206651562351531,1.18800285728205,0,0,0,0,0,0,0.438977620880838,0,0.300476117813194,0,0,0,0,0,0.103052529238439,0,0,0,0,0,0.0920498986422993,0,0,0,0.169560592310488,0,0,0,1.09776335516636,1.06023814657188,0.813357600086629,0.310983165046111,0.504641701751257,0.72995471815166,0,0,0,0,0,0,0,0.241011029883482,0.110293972732394,0.217879444092406,0,0,0,0,0,0,0.4115740113314,0,0,0,0.590789906681404,0,0.122988438543114,0,0,0,0.100528972411631,0,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0,0,0.268675568108545,0,0,1.47798971368783,0.088048434013226,0.829312462163088,1.15295962733569,0.25248486685276,0,0,0,0,0,0,0,0.112131084345361,0,0,0.129271715757778,0,0,0,0,0,0,0,0,0,0,0,0,0.791951872933429,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0.224170287987055,0.197030760201927,0,0,0,0,0,0.167516265334349,0,0,0,0,0,0,0.271265023699736,0,0,0,0,0,0,0,0,0.368738337083406,0,0.195801157462741,0.343143423810856,0.413536052245775,0,0.106727557803444,0,0,0,0,0,0,0,0,0.160853921143607,0,0.462629081407967,0,0,0,0,0.120859449591622,0.40101294060657,0.0920809889358963,0.114814448164607,0,0,0.451199612907412,0,0,0,0.105551628892876,0,0,0.215915916102139,0,0,0,0,0,0.223874754722178,0,0,0,0.656029291399411,0,0.309123034943167,0.27470839445503,0.082509499920588,0,0,0,0,0,0,0.137836572484531,0,0,0.170453254832202,0.178064071293475,0,0,0,0.2023155617111,0,0.62962469366128,0.6970372701606,0,0.532306030317022,0,0.18532421910392,0.715624433709956,0,0,0,0,0,0.318203247925937,0,0.179872457583315,0,0.235624804691373,0,0,0,0,0,0,0,0.424216295861138,0,0,0,0.438450885253763,0,0,0.405820753925408,0,0,0,0,0.35667105148125,0,0,0,0,0.349934720244983,0.0962221127255121,0,1.08890984861323,0.282431402330337,0.43050537267123,0,0,0,0,0.764637207142375,0,0.238231775457789,0,0,0.540031437238115,0,0.106824071127473,0,0.245040215981032,0.185803175125719,0.577076851905779,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.343505344755765,0,0,0,0,0,0,0,0,1.4098700508785,0.18714054040822,0,1.33496573924465,0,0,0.23874448473769,0.296964680832639,0,0,0,0,0,0.211125408127993,0.796991953004279,0.552567831062295,0,0.306806047506464,0,0,0.0898683511473268,0,0,0.0986434056369336,0,0,0,0.185536196323703,0,0.520855522170466,3.41093999985163,0,0.455173793141999,1.27126825146383,0,0.689486746482929,0,0.520874984799877,0,0.120596438625408,0,0,0,0.438770794307945,0.32681539055697,0.139423744278603,0.307801034015188,1.02547850262301,0,0.179515288819544,0.54323685961004,0,0.0915975934018623,0,0,0,0.332423363800313,0,0,0,0,0.476809736941136,0,0,0.282706142867882,0.432777279484182,0,0.265372693510018,0.611030144933625,0,0,0,0.134802265961354,0,0,0.182454789215666,0.782658475728359,0,0.789168805698781,0,0.30607276163049,0.189559738885464,0,0,0,0,0.313932918407225,0,0,0,0,0,0.261177619741208,0.873633341210151,0.171986032471617,0,0.146178634172371,0.164230914106418,0.0969890164884194,0.176512253383001,0,0.137041924646751,0.19871461170299,0.0633107959558787,0.782205530939212,0,0.640358984218058,0.19980960958213,0.432271251462318,0.572682980829578,0.514784993585894,0.288109595976299,0,0.235694034616795,0.135904206073614,0,0.305994652908965,0,0,0,2.55493176133945,0,0.262887354279314,0,0.229160424011684,0,0.399358000997982,0,0,0.604651252380536,0.720599767084807,9.31967596219631,1.41809728153003,0.494495150286999,0.876246070104404,0,0.508039992394707,0,0.136203406111576,0.482259445395058,0.825236619583403,0.415440338029185,0,0,0.121499113316049,0,0.315222829196793,0.367182116944987,0.105600336519406,0,0.383830394638891,0,0,1.27134268827375,0,0,0,0,0.082092520749339,0.170388021785422,0.113312091520126,0,0,0,0,0.171086837884329,3.52407511158336,1.06787412567695,1.41483874589699,0.41423905534719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| ||
|short_description=p28@RERE | |short_description=p28@RERE | ||
}} | }} |
Latest revision as of 15:02, 19 September 2015
Short description: | p28@RERE |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_28_at_RERE_5end |
Coexpression cluster: | NA |
Association with transcript: | 88bp_to_ENST00000468247_5end |
EntrezGene: | RERE |
HGNC: | 9965 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lung | 1.55e-08 | 22 |
respiratory tube | 1.55e-08 | 22 |
respiration organ | 1.55e-08 | 22 |
pair of lungs | 1.55e-08 | 22 |
lung primordium | 1.55e-08 | 22 |
lung bud | 1.55e-08 | 22 |
trunk region element | 1.18e-07 | 101 |
maxillary sinus | 3.13e-07 | 1 |
paranasal sinus | 3.13e-07 | 1 |
thoracic cavity element | 4.92e-07 | 34 |
thoracic cavity | 4.92e-07 | 34 |
thoracic segment organ | 8.28e-07 | 35 |
foregut | 9.37e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
respiratory system cancer | 1.04e-08 | 16 |
bronchus cancer | 9.76e-08 | 7 |
bronchogenic carcinoma | 9.76e-08 | 7 |
carcinoma | 2.82e-07 | 106 |
paranasal sinus cancer | 3.13e-07 | 1 |
maxillary sinus cancer | 3.13e-07 | 1 |
osteosarcoma | 8.27e-07 | 1 |