FFCP PHASE1:Hg19::chr6:7107939..7107993,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr6:7107939..7107993,+
|short_description=p1@RREB1
|description=CAGE_peak_1_at_RREB1_5end
|association_with_transcript=-38bp_to_ENST00000491191_5end
|EntrezGe...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6239 | |EntrezGene=6239 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10449 | |HGNC=10449 | ||
|TSSclassifier=strong | |||
|UniProt=C9JE09 | |UniProt=C9JE09 | ||
|association_with_transcript=-38bp_to_ENST00000491191_5end | |||
|cluster_id=chr6:7107939..7107993,+ | |||
|description=CAGE_peak_1_at_RREB1_5end | |||
|id=chr6:7107939..7107993,+ | |||
|ontology_enrichment_celltype=CL:0000037!4.76e-34!172;CL:0000566!4.76e-34!172;CL:0000988!6.90e-32!182;CL:0002032!1.00e-31!165;CL:0000837!1.00e-31!165;CL:0000763!1.08e-31!112;CL:0000049!1.08e-31!112;CL:0000738!5.00e-30!140;CL:0000766!1.91e-26!76;CL:0000557!1.98e-25!71;CL:0002031!6.91e-23!124;CL:0000839!1.41e-22!70;CL:0002009!3.72e-22!65;CL:0002087!1.29e-21!119;CL:0002194!3.73e-21!63;CL:0000576!3.73e-21!63;CL:0000040!3.73e-21!63;CL:0000559!3.73e-21!63;CL:0002057!2.43e-20!42;CL:0000860!3.19e-20!45 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.40e-15;33!CL:0002057;1.40e-15;33!CL:0000576;1.10e-13;48!CL:0000473;1.66e-13;39!CL:0000234;1.66e-13;39!CL:0000766;4.03e-12;69!CL:0000763;2.39e-09;100!CL:0000738;1.63e-07;136!CL:0002087;5.53e-07;104!CL:0000451;9.73e-07;10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000037,2.30e-34,168;CL:0000763,2.54e-32,108;CL:0000049,2.54e-32,108;CL:0000988,4.27e-32,177;CL:0002032,4.89e-32,161;CL:0000837,4.89e-32,161;CL:0000738,1.99e-30,136;CL:0000766,2.48e-27,72;CL:0000557,2.35e-26,67;CL:0000839,2.19e-23,66;CL:0002031,3.17e-23,120;CL:0002009,4.94e-23,61;CL:0002194,5.12e-22,59;CL:0000576,5.12e-22,59;CL:0000040,5.12e-22,59;CL:0000559,5.12e-22,59;CL:0002087,5.98e-22,115;CL:0000473,1.16e-20,48;CL:0000234,1.16e-20,48;CL:0000860,2.43e-20,42;CL:0002057,2.43e-20,42 | |||
|ontology_enrichment_development_v019=CL:0002057;6.18e-15;42!CL:0000049;9.58e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!4.38e-21!102;UBERON:0003061!4.38e-21!102;UBERON:0002193!1.24e-20!112;UBERON:0002371!3.96e-20!80;UBERON:0001474!2.29e-18!86;UBERON:0002405!2.67e-18!115;UBERON:0004765!1.48e-13!101;UBERON:0001434!1.48e-13!101 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,1.66e-21,98;UBERON:0003061,1.66e-21,98;UBERON:0002193,5.56e-21,108;UBERON:0002371,1.05e-20,76;UBERON:0002405,2.56e-20,93;UBERON:0001474,8.06e-19,82;UBERON:0004765,3.78e-15,90;UBERON:0001434,3.25e-12,100 | |||
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| ||
|short_description=p1@RREB1 | |||
}} | }} |
Latest revision as of 15:25, 19 September 2015
Short description: | p1@RREB1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_RREB1_5end |
Coexpression cluster: | NA |
Association with transcript: | -38bp_to_ENST00000491191_5end |
EntrezGene: | RREB1 |
HGNC: | 10449 |
UniProt: | C9JE09 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hematopoietic stem cell | 2.30e-34 | 168 |
myeloid cell | 2.54e-32 | 108 |
common myeloid progenitor | 2.54e-32 | 108 |
hematopoietic cell | 4.27e-32 | 177 |
hematopoietic oligopotent progenitor cell | 4.89e-32 | 161 |
hematopoietic multipotent progenitor cell | 4.89e-32 | 161 |
leukocyte | 1.99e-30 | 136 |
myeloid leukocyte | 2.48e-27 | 72 |
granulocyte monocyte progenitor cell | 2.35e-26 | 67 |
myeloid lineage restricted progenitor cell | 2.19e-23 | 66 |
hematopoietic lineage restricted progenitor cell | 3.17e-23 | 120 |
macrophage dendritic cell progenitor | 4.94e-23 | 61 |
monopoietic cell | 5.12e-22 | 59 |
monocyte | 5.12e-22 | 59 |
monoblast | 5.12e-22 | 59 |
promonocyte | 5.12e-22 | 59 |
nongranular leukocyte | 5.98e-22 | 115 |
defensive cell | 1.16e-20 | 48 |
phagocyte | 1.16e-20 | 48 |
classical monocyte | 2.43e-20 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.43e-20 | 42 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 1.66e-21 | 98 |
blood island | 1.66e-21 | 98 |
hemolymphoid system | 5.56e-21 | 108 |
bone marrow | 1.05e-20 | 76 |
immune system | 2.56e-20 | 93 |
bone element | 8.06e-19 | 82 |
skeletal element | 3.78e-15 | 90 |
skeletal system | 3.25e-12 | 100 |