FFCP PHASE1:Hg19::chr7:80548356..80548384,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:80548356..80548384,-
|short_description=p1@SEMA3C
|description=CAGE_peak_1_at_SEMA3C_5end
|association_with_transcript=113bp_to_ENST00000487621_5end
|Entr...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=10512 | |EntrezGene=10512 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10725 | |HGNC=10725 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=113bp_to_ENST00000487621_5end | |||
|cluster_id=chr7:80548356..80548384,- | |||
|coexpression_cluster_id=C958 | |||
|description=CAGE_peak_1_at_SEMA3C_5end | |||
|id=chr7:80548356..80548384,- | |||
|ontology_enrichment_celltype=CL:0000055!6.67e-19!180;CL:0000220!1.23e-09!246;CL:0000057!3.29e-09!75;CL:0002321!3.79e-09!248;CL:0000680!6.10e-09!57;CL:0000056!6.10e-09!57;CL:0000355!6.10e-09!57;CL:0002076!9.20e-09!43;CL:0000187!6.97e-08!54;CL:0000192!7.12e-08!42;CL:0000514!7.12e-08!42;CL:0000359!1.33e-07!32;CL:0000499!7.64e-07!27 | |||
|ontology_enrichment_celltype_v019=CL:0000499;2.91e-07;28!CL:0000359;3.15e-07;32 | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.19e-09,76;CL:0000680,3.49e-09,58;CL:0000056,3.49e-09,58;CL:0000355,3.49e-09,58;CL:0002076,9.18e-09,42;CL:0002321,9.93e-09,250;CL:0000187,4.09e-08,55;CL:0000192,4.15e-08,43;CL:0000514,4.15e-08,43;CL:0000359,1.19e-07,32;CL:0000499,2.79e-07,28 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:2394!1.11e-07!14 | |||
|ontology_enrichment_disease_v019=DOID:2394;1.53e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:2394,1.53e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0000475!4.74e-16!365;UBERON:0000468!2.21e-14!659;UBERON:0000486!3.27e-13!82;UBERON:0000467!2.31e-11!625;UBERON:0002100!2.31e-11!216;UBERON:0000480!4.54e-11!626;UBERON:0003102!9.28e-11!95;UBERON:0000914!1.11e-10!83;UBERON:0002329!1.11e-10!83;UBERON:0003077!1.11e-10!83;UBERON:0003059!1.11e-10!83;UBERON:0007282!1.11e-10!83;UBERON:0009618!1.11e-10!83;UBERON:0007285!1.11e-10!83;UBERON:0000481!3.63e-10!347;UBERON:0003104!1.50e-09!238;UBERON:0009142!1.50e-09!238;UBERON:0004290!2.34e-09!70;UBERON:0002385!2.99e-09!63;UBERON:0001015!2.99e-09!63;UBERON:0000383!2.99e-09!63;UBERON:0001134!4.14e-09!61;UBERON:0002036!4.14e-09!61;UBERON:0003082!4.14e-09!61;UBERON:0002050!3.55e-08!605;UBERON:0005423!3.55e-08!605;UBERON:0000062!4.23e-08!511;UBERON:0000923!5.62e-08!604;UBERON:0005291!5.62e-08!604;UBERON:0006598!5.62e-08!604;UBERON:0002532!5.62e-08!604;UBERON:0000922!6.52e-08!612;UBERON:0005256!1.13e-07!143;UBERON:0002199!6.44e-07!45;UBERON:0002416!6.44e-07!45 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000486,1.69e-13,83;UBERON:0003102,6.28e-12,99;UBERON:0002100,2.56e-10,199;UBERON:0002329,1.33e-09,71;UBERON:0003059,1.33e-09,71;UBERON:0007282,1.33e-09,71;UBERON:0004290,1.33e-09,71;UBERON:0009618,1.33e-09,71;UBERON:0002385,1.70e-09,64;UBERON:0001015,1.70e-09,64;UBERON:0000383,1.70e-09,64;UBERON:0007524,2.21e-09,73;UBERON:0001134,2.36e-09,62;UBERON:0002036,2.36e-09,62;UBERON:0003082,2.36e-09,62;UBERON:0003077,2.61e-09,72;UBERON:0007285,2.61e-09,72;UBERON:0004923,1.21e-07,66;UBERON:0007503,2.25e-07,78;UBERON:0002199,5.81e-07,46;UBERON:0002416,5.81e-07,46 | |||
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| ||
|short_description=p1@SEMA3C | |||
}} | }} |
Latest revision as of 17:24, 19 September 2015
Short description: | p1@SEMA3C |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_1_at_SEMA3C_5end |
Coexpression cluster: | C958_Synoviocyte_Urothelial_Fibroblast_Ewing_Mallassezderived_Chondrocyte_epithelioid |
Association with transcript: | 113bp_to_ENST00000487621_5end |
EntrezGene: | SEMA3C |
HGNC: | 10725 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.19e-09 | 76 |
muscle precursor cell | 3.49e-09 | 58 |
myoblast | 3.49e-09 | 58 |
multi-potent skeletal muscle stem cell | 3.49e-09 | 58 |
endo-epithelial cell | 9.18e-09 | 42 |
embryonic cell | 9.93e-09 | 250 |
muscle cell | 4.09e-08 | 55 |
smooth muscle cell | 4.15e-08 | 43 |
smooth muscle myoblast | 4.15e-08 | 43 |
vascular associated smooth muscle cell | 1.19e-07 | 32 |
stromal cell | 2.79e-07 | 28 |
Ontology term | p-value | n |
---|---|---|
multilaminar epithelium | 1.69e-13 | 83 |
surface structure | 6.28e-12 | 99 |
trunk | 2.56e-10 | 199 |
somite | 1.33e-09 | 71 |
presomitic mesoderm | 1.33e-09 | 71 |
presumptive segmental plate | 1.33e-09 | 71 |
dermomyotome | 1.33e-09 | 71 |
trunk paraxial mesoderm | 1.33e-09 | 71 |
muscle tissue | 1.70e-09 | 64 |
musculature | 1.70e-09 | 64 |
musculature of body | 1.70e-09 | 64 |
dense mesenchyme tissue | 2.21e-09 | 73 |
skeletal muscle tissue | 2.36e-09 | 62 |
striated muscle tissue | 2.36e-09 | 62 |
myotome | 2.36e-09 | 62 |
paraxial mesoderm | 2.61e-09 | 72 |
presumptive paraxial mesoderm | 2.61e-09 | 72 |
organ component layer | 1.21e-07 | 66 |
epithelial vesicle | 2.25e-07 | 78 |
integument | 5.81e-07 | 46 |
integumental system | 5.81e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
ovarian cancer | 1.53e-07 | 14 |