FFCP PHASE1:Hg19::chr3:118892394..118892403,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7348 | |EntrezGene=7348 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12578 | |HGNC=12578 | ||
|TSSclassifier=strong | |||
|UniProt=O75841 | |UniProt=O75841 | ||
|association_with_transcript=-21bp_to_NM_006952,uc003ecc.2,uc011bix.1_5end | |association_with_transcript=-21bp_to_NM_006952,uc003ecc.2,uc011bix.1_5end | ||
|cluster_id=chr3:118892394..118892403,+ | |||
|coexpression_cluster_id=C68 | |||
|description=CAGE_peak_3_at_UPK1B_5end | |description=CAGE_peak_3_at_UPK1B_5end | ||
|id=chr3:118892394..118892403,+ | |id=chr3:118892394..118892403,+ | ||
|ontology_enrichment_celltype=CL:0000066!2.58e-13!254;CL:0002076!4.05e-12!43;CL:0000223!3.47e-10!59;CL:1000507!4.77e-09!12;CL:1000494!4.77e-09!12;CL:1000449!4.62e-08!16;CL:0000349!4.13e-07!3;CL:0002577!4.13e-07!3;CL:1000497!5.99e-07!18;CL:0002518!5.99e-07!18;CL:0002541!9.09e-07!3 | |ontology_enrichment_celltype=CL:0000066!2.58e-13!254;CL:0002076!4.05e-12!43;CL:0000223!3.47e-10!59;CL:1000507!4.77e-09!12;CL:1000494!4.77e-09!12;CL:1000449!4.62e-08!16;CL:0000349!4.13e-07!3;CL:0002577!4.13e-07!3;CL:1000497!5.99e-07!18;CL:0002518!5.99e-07!18;CL:0002541!9.09e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0000349;2.66e-24;19!CL:0002577;1.57e-15;3!CL:1000507;9.64e-12;10!CL:1000494;9.64e-12;10!CL:0000575;4.06e-11;2!CL:0000650;3.62e-10;2!CL:1000500;3.62e-10;2!CL:1000618;3.62e-10;2!CL:1001318;3.62e-10;2!CL:0002536;3.62e-10;2!CL:0002173;3.62e-10;2!CL:0002537;6.22e-10;5!CL:0002541;9.55e-08;3!CL:1000449;9.66e-08;15!CL:1000497;8.48e-07;17!CL:0002518;8.48e-07;17 | |||
|ontology_enrichment_celltype_v019_2=CL:0000349,1.74e-24,19;CL:0002577,1.32e-15,3;CL:1000507,1.17e-11,10;CL:1000494,1.17e-11,10;CL:0000575,4.72e-11,2;CL:0002536,1.86e-10,2;CL:0000650,4.81e-10,2;CL:1000500,4.81e-10,2;CL:1000618,4.81e-10,2;CL:1001318,4.81e-10,2;CL:0002173,4.81e-10,2;CL:0002537,6.23e-10,5;CL:0000066,6.24e-08,253;CL:0002541,9.72e-08,3;CL:1000449,1.10e-07,15;CL:1000497,9.47e-07,17;CL:0002518,9.47e-07,17 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.73e-19!14;UBERON:0000158!2.73e-19!14;UBERON:0003124!5.44e-14!7;UBERON:0004119!1.54e-10!169;UBERON:0000925!1.54e-10!169;UBERON:0006595!1.54e-10!169;UBERON:0000478!8.09e-10!24;UBERON:0009773!4.77e-09!12;UBERON:0001231!4.77e-09!12;UBERON:0004810!4.77e-09!12;UBERON:0001987!6.95e-09!4;UBERON:0004340!6.95e-09!4;UBERON:0000064!4.12e-08!219;UBERON:0004211!4.62e-08!16;UBERON:0001285!4.62e-08!16;UBERON:0007684!4.62e-08!16;UBERON:0003220!4.62e-08!16;UBERON:0004208!4.62e-08!16;UBERON:0006554!9.75e-08!44;UBERON:0000464!1.27e-07!104;UBERON:0000305!1.62e-07!7;UBERON:0001008!1.80e-07!45;UBERON:0006555!1.80e-07!17;UBERON:0005103!1.80e-07!17;UBERON:0000083!1.80e-07!17;UBERON:0009201!1.80e-07!17;UBERON:0004819!1.80e-07!17;UBERON:0006553!1.80e-07!17;UBERON:0003074!1.80e-07!17;UBERON:0003060!1.80e-07!17;UBERON:0000080!5.99e-07!18;UBERON:0002120!5.99e-07!18;UBERON:0004875!5.99e-07!18;UBERON:0005721!5.99e-07!18;UBERON:0005754!5.99e-07!18;UBERON:0007297!5.99e-07!18;UBERON:0000476!9.09e-07!3;UBERON:0000920!9.09e-07!3;UBERON:0000077!9.96e-07!130 | |ontology_enrichment_uberon=UBERON:0005631!2.73e-19!14;UBERON:0000158!2.73e-19!14;UBERON:0003124!5.44e-14!7;UBERON:0004119!1.54e-10!169;UBERON:0000925!1.54e-10!169;UBERON:0006595!1.54e-10!169;UBERON:0000478!8.09e-10!24;UBERON:0009773!4.77e-09!12;UBERON:0001231!4.77e-09!12;UBERON:0004810!4.77e-09!12;UBERON:0001987!6.95e-09!4;UBERON:0004340!6.95e-09!4;UBERON:0000064!4.12e-08!219;UBERON:0004211!4.62e-08!16;UBERON:0001285!4.62e-08!16;UBERON:0007684!4.62e-08!16;UBERON:0003220!4.62e-08!16;UBERON:0004208!4.62e-08!16;UBERON:0006554!9.75e-08!44;UBERON:0000464!1.27e-07!104;UBERON:0000305!1.62e-07!7;UBERON:0001008!1.80e-07!45;UBERON:0006555!1.80e-07!17;UBERON:0005103!1.80e-07!17;UBERON:0000083!1.80e-07!17;UBERON:0009201!1.80e-07!17;UBERON:0004819!1.80e-07!17;UBERON:0006553!1.80e-07!17;UBERON:0003074!1.80e-07!17;UBERON:0003060!1.80e-07!17;UBERON:0000080!5.99e-07!18;UBERON:0002120!5.99e-07!18;UBERON:0004875!5.99e-07!18;UBERON:0005721!5.99e-07!18;UBERON:0005754!5.99e-07!18;UBERON:0007297!5.99e-07!18;UBERON:0000476!9.09e-07!3;UBERON:0000920!9.09e-07!3;UBERON:0000077!9.96e-07!130 | ||
|ontology_enrichment_uberon_v019=UBERON:0005631;1.36e-23;10!UBERON:0000158;1.36e-23;10!UBERON:0000478;8.53e-23;24!UBERON:0001987;5.65e-20;4!UBERON:0000305;1.53e-17;7!UBERON:0004211;9.64e-12;10!UBERON:0009773;9.64e-12;10!UBERON:0001231;9.64e-12;10!UBERON:0004810;9.64e-12;10!UBERON:0003567;3.62e-10;2!UBERON:0003838;3.62e-10;2!UBERON:0003586;3.62e-10;2!UBERON:0005169;3.62e-10;2!UBERON:0002321;3.62e-10;2!UBERON:0005215;3.62e-10;2!UBERON:0002303;3.62e-10;2!UBERON:0002319;3.62e-10;2!UBERON:0001851;7.44e-08;15!UBERON:0003124;9.55e-08;3!UBERON:0000920;9.55e-08;3!UBERON:0006555;9.66e-08;15!UBERON:0004819;9.66e-08;15!UBERON:0001285;9.66e-08;15!UBERON:0007684;9.66e-08;15!UBERON:0006554;8.20e-07;30!UBERON:0001008;8.20e-07;30 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0005631,5.56e-41,14;UBERON:0000158,5.56e-41,14;UBERON:0003124,3.21e-25,7;UBERON:0000478,5.73e-23,24;UBERON:0001987,4.43e-20,4;UBERON:0004340,4.43e-20,4;UBERON:0000305,9.47e-18,7;UBERON:0004871,1.68e-15,8;UBERON:0004810,1.17e-11,10;UBERON:0006554,3.94e-10,47;UBERON:0003567,4.81e-10,2;UBERON:0003838,4.81e-10,2;UBERON:0003586,4.81e-10,2;UBERON:0005169,4.81e-10,2;UBERON:0002321,4.81e-10,2;UBERON:0005215,4.81e-10,2;UBERON:0002303,4.81e-10,2;UBERON:0002319,4.81e-10,2;UBERON:0001008,7.09e-10,48;UBERON:0004923,2.71e-08,66;UBERON:0001851,8.52e-08,15;UBERON:0000920,9.72e-08,3;UBERON:0004211,1.10e-07,15;UBERON:0009773,1.10e-07,15;UBERON:0001231,1.10e-07,15;UBERON:0001285,1.10e-07,15;UBERON:0007684,1.10e-07,15;UBERON:0004208,1.10e-07,15;UBERON:0006555,3.45e-07,16;UBERON:0004819,3.45e-07,16 | |||
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| ||
|short_description=p3@UPK1B | |short_description=p3@UPK1B | ||
}} | }} |
Latest revision as of 19:26, 19 September 2015
Short description: | p3@UPK1B |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_UPK1B_5end |
Coexpression cluster: | C68_amniotic_chorionic_Placental_salivary_placenta_tongue_mesothelioma |
Association with transcript: | -21bp_to_NM_006952, uc003ecc.2, uc011bix.1_5end |
EntrezGene: | UPK1B |
HGNC: | 12578 |
UniProt: | O75841 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
extraembryonic cell | 1.74e-24 | 19 |
placental epithelial cell | 1.32e-15 | 3 |
kidney tubule cell | 1.17e-11 | 10 |
nephron tubule epithelial cell | 1.17e-11 | 10 |
corneal epithelial cell | 4.72e-11 | 2 |
amniotic epithelial cell | 1.86e-10 | 2 |
mesangial cell | 4.81e-10 | 2 |
kidney interstitial cell | 4.81e-10 | 2 |
juxtaglomerular complex cell | 4.81e-10 | 2 |
renal interstitial pericyte | 4.81e-10 | 2 |
extraglomerular mesangial cell | 4.81e-10 | 2 |
amnion mesenchymal stem cell | 6.23e-10 | 5 |
epithelial cell | 6.24e-08 | 253 |
chorionic membrane mesenchymal stem cell | 9.72e-08 | 3 |
epithelial cell of nephron | 1.10e-07 | 15 |
kidney cell | 9.47e-07 | 17 |
kidney epithelial cell | 9.47e-07 | 17 |
Ontology term | p-value | n |
---|---|---|
extraembryonic membrane | 5.56e-41 | 14 |
membranous layer | 5.56e-41 | 14 |
chorion | 3.21e-25 | 7 |
extraembryonic structure | 5.73e-23 | 24 |
placenta | 4.43e-20 | 4 |
allantois | 4.43e-20 | 4 |
amnion | 9.47e-18 | 7 |
somatic layer of lateral plate mesoderm | 1.68e-15 | 8 |
nephron tubule epithelium | 1.17e-11 | 10 |
urinary system structure | 3.94e-10 | 47 |
abdomen connective tissue | 4.81e-10 | 2 |
abdominal segment connective tissue | 4.81e-10 | 2 |
trunk connective tissue | 4.81e-10 | 2 |
interstitial tissue | 4.81e-10 | 2 |
extraglomerular mesangium | 4.81e-10 | 2 |
kidney interstitium | 4.81e-10 | 2 |
juxtaglomerular apparatus | 4.81e-10 | 2 |
mesangium | 4.81e-10 | 2 |
renal system | 7.09e-10 | 48 |
organ component layer | 2.71e-08 | 66 |
cortex | 8.52e-08 | 15 |
egg chorion | 9.72e-08 | 3 |
nephron epithelium | 1.10e-07 | 15 |
renal tubule | 1.10e-07 | 15 |
nephron tubule | 1.10e-07 | 15 |
nephron | 1.10e-07 | 15 |
uriniferous tubule | 1.10e-07 | 15 |
nephrogenic mesenchyme | 1.10e-07 | 15 |
excretory tube | 3.45e-07 | 16 |
kidney epithelium | 3.45e-07 | 16 |