FFCP PHASE1:Hg19::chr12:6484190..6484221,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr12:6484190..6484221,-
|short_description=p7@SCNN1A
|description=CAGE_peak_7_at_SCNN1A_5end
|association_with_transcript=157bp_to_ENST00000542436_5end
|Entre...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6337 | |EntrezGene=6337 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=10599 | |HGNC=10599 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=157bp_to_ENST00000542436_5end | |||
|cluster_id=chr12:6484190..6484221,- | |||
|coexpression_cluster_id=C3316 | |||
|description=CAGE_peak_7_at_SCNN1A_5end | |||
|id=chr12:6484190..6484221,- | |||
|ontology_enrichment_celltype=CL:0000066!3.43e-21!254;CL:0000223!7.20e-18!59;CL:0002076!1.63e-16!43;CL:0002368!1.53e-10!13;CL:0002202!1.72e-09!9;CL:0002632!1.72e-09!9;CL:1000507!1.35e-08!12;CL:1000494!1.35e-08!12;CL:1000449!2.67e-07!16 | |||
|ontology_enrichment_celltype_v019=CL:0002577;4.62e-10;3!CL:1000507;2.24e-09;10!CL:1000494;2.24e-09;10!CL:0000239;3.82e-09;3!CL:1000615;3.82e-09;3!CL:0002306;3.82e-09;3!CL:1000449;4.07e-08;15!CL:0002681;1.08e-07;12!CL:0002584;1.08e-07;12!CL:0000083;1.50e-07;4!CL:0002536;2.11e-07;2!CL:0002327;3.86e-07;4!CL:1000497;4.87e-07;17!CL:0002518;4.87e-07;17!CL:0000244;5.67e-07;4!CL:0000731;5.67e-07;4!CL:0000123;7.28e-07;2!CL:0000242;7.28e-07;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,8.92e-14,253;CL:0002577,5.15e-10,3;CL:1000507,2.59e-09,10;CL:1000494,2.59e-09,10;CL:0000239,5.07e-09,3;CL:1000615,5.07e-09,3;CL:0002306,5.07e-09,3;CL:1000449,4.24e-08,15;CL:0002681,1.24e-07,12;CL:0002584,1.24e-07,12;CL:0000083,1.44e-07,4;CL:0002536,2.08e-07,2;CL:0002327,4.08e-07,4;CL:1000497,5.04e-07,17;CL:0002518,5.04e-07,17;CL:0000244,5.69e-07,4;CL:0000731,5.69e-07,4;CL:0000242,6.05e-07,2 | |||
|ontology_enrichment_development_v019=UBERON:0007297;9.15e-07;2 | |||
|ontology_enrichment_disease=DOID:305!3.41e-11!106;DOID:0050687!1.22e-08!143 | |||
|ontology_enrichment_disease_v019=DOID:1793;1.50e-07;4!DOID:299;1.65e-07;25!DOID:4074;4.24e-07;2!DOID:4905;4.24e-07;2!DOID:3498;4.24e-07;2!DOID:4929;9.97e-07;2 | |||
|ontology_enrichment_disease_v019_2=DOID:299,1.11e-07,25;DOID:1793,1.44e-07,4;DOID:305,2.44e-07,106;DOID:4074,4.14e-07,2;DOID:4905,4.14e-07,2;DOID:3498,4.14e-07,2;DOID:4929,6.79e-07,2 | |||
|ontology_enrichment_uberon=UBERON:0004119!3.35e-24!169;UBERON:0000925!3.35e-24!169;UBERON:0006595!3.35e-24!169;UBERON:0004921!1.07e-18!129;UBERON:0004185!1.07e-18!129;UBERON:0000077!3.50e-18!130;UBERON:0001007!3.29e-17!155;UBERON:0001555!3.29e-17!155;UBERON:0007026!3.29e-17!155;UBERON:0000464!2.29e-15!104;UBERON:0000466!2.70e-15!126;UBERON:0005177!3.07e-15!107;UBERON:0006554!4.38e-14!44;UBERON:0001008!1.43e-13!45;UBERON:0001041!1.17e-12!98;UBERON:0005911!1.97e-11!82;UBERON:0000058!3.35e-11!26;UBERON:0000065!2.00e-10!53;UBERON:0001004!1.06e-09!72;UBERON:0005153!1.91e-09!37;UBERON:0000080!3.47e-09!18;UBERON:0002120!3.47e-09!18;UBERON:0004875!3.47e-09!18;UBERON:0005721!3.47e-09!18;UBERON:0005754!3.47e-09!18;UBERON:0007297!3.47e-09!18;UBERON:0002113!4.35e-09!27;UBERON:0003918!4.35e-09!27;UBERON:0005095!4.35e-09!27;UBERON:0007687!4.35e-09!27;UBERON:0009569!4.56e-09!113;UBERON:0000489!5.93e-09!32;UBERON:0000922!8.55e-09!612;UBERON:0003104!9.92e-09!238;UBERON:0009142!9.92e-09!238;UBERON:0005178!1.04e-08!34;UBERON:0002224!1.04e-08!34;UBERON:0000481!1.34e-08!347;UBERON:0009773!1.35e-08!12;UBERON:0001231!1.35e-08!12;UBERON:0004810!1.35e-08!12;UBERON:0008947!2.15e-08!38;UBERON:0003258!2.15e-08!38;UBERON:0000062!2.31e-08!511;UBERON:0000063!2.32e-08!97;UBERON:0003887!2.41e-08!21;UBERON:0005181!2.67e-08!35;UBERON:0006555!4.01e-08!17;UBERON:0005103!4.01e-08!17;UBERON:0000083!4.01e-08!17;UBERON:0009201!4.01e-08!17;UBERON:0004819!4.01e-08!17;UBERON:0006553!4.01e-08!17;UBERON:0003074!4.01e-08!17;UBERON:0003060!4.01e-08!17;UBERON:0002553!4.14e-08!70;UBERON:0004876!6.83e-08!20;UBERON:0003064!7.19e-08!37;UBERON:0000064!9.55e-08!219;UBERON:0005631!1.11e-07!14;UBERON:0000158!1.11e-07!14;UBERON:0000468!1.90e-07!659;UBERON:0002050!2.09e-07!605;UBERON:0005423!2.09e-07!605;UBERON:0000072!2.38e-07!46;UBERON:0004211!2.67e-07!16;UBERON:0001285!2.67e-07!16;UBERON:0007684!2.67e-07!16;UBERON:0003220!2.67e-07!16;UBERON:0004208!2.67e-07!16;UBERON:0005910!3.49e-07!6;UBERON:0000923!4.49e-07!604;UBERON:0005291!4.49e-07!604;UBERON:0006598!4.49e-07!604;UBERON:0002532!4.49e-07!604;UBERON:0005409!4.55e-07!35;UBERON:0005172!5.99e-07!55;UBERON:0005173!5.99e-07!55;UBERON:0002048!6.10e-07!22;UBERON:0000117!6.10e-07!22;UBERON:0000171!6.10e-07!22;UBERON:0000170!6.10e-07!22;UBERON:0005597!6.10e-07!22;UBERON:0000118!6.10e-07!22;UBERON:0004175!6.35e-07!25;UBERON:0007196!7.16e-07!14;UBERON:0001558!7.16e-07!14;UBERON:0005156!9.00e-07!59;UBERON:0000990!9.00e-07!59;UBERON:0003886!9.88e-07!63 | |||
|ontology_enrichment_uberon_v019=UBERON:0006554;1.98e-12;30!UBERON:0001008;1.98e-12;30!UBERON:0006947;1.08e-09;3!UBERON:0004054;1.08e-09;3!UBERON:0004211;2.24e-09;10!UBERON:0009773;2.24e-09;10!UBERON:0001231;2.24e-09;10!UBERON:0004810;2.24e-09;10!UBERON:0006853;3.82e-09;3!UBERON:0007685;3.82e-09;3!UBERON:0004134;3.82e-09;3!UBERON:0006555;4.07e-08;15!UBERON:0004819;4.07e-08;15!UBERON:0001285;4.07e-08;15!UBERON:0007684;4.07e-08;15!UBERON:0001225;1.08e-07;12!UBERON:0008987;1.08e-07;12!UBERON:0001987;1.27e-07;4!UBERON:0002113;1.44e-07;24!UBERON:0011143;1.44e-07;24!UBERON:0000489;2.23e-07;29!UBERON:0005904;2.38e-07;4!UBERON:0001911;3.86e-07;4!UBERON:0000058;7.29e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006554,2.34e-18,47;UBERON:0001008,7.27e-18,48;UBERON:0005177,1.79e-10,101;UBERON:0002113,2.16e-10,26;UBERON:0003918,2.16e-10,26;UBERON:0011143,2.16e-10,26;UBERON:0005095,2.16e-10,26;UBERON:0007687,2.16e-10,26;UBERON:0000489,5.77e-10,31;UBERON:0006555,1.29e-09,16;UBERON:0004819,1.29e-09,16;UBERON:0006947,1.60e-09,3;UBERON:0004054,1.60e-09,3;UBERON:0004810,2.59e-09,10;UBERON:0006853,5.07e-09,3;UBERON:0007685,5.07e-09,3;UBERON:0004134,5.07e-09,3;UBERON:0004119,2.37e-08,160;UBERON:0000925,2.37e-08,160;UBERON:0006595,2.37e-08,160;UBERON:0004211,4.24e-08,15;UBERON:0009773,4.24e-08,15;UBERON:0001231,4.24e-08,15;UBERON:0001285,4.24e-08,15;UBERON:0007684,4.24e-08,15;UBERON:0004208,4.24e-08,15;UBERON:0004175,6.07e-08,25;UBERON:0001225,1.24e-07,12;UBERON:0008987,1.24e-07,12;UBERON:0001987,1.38e-07,4;UBERON:0004340,1.38e-07,4;UBERON:0005904,3.18e-07,4;UBERON:0005631,3.50e-07,14;UBERON:0000158,3.50e-07,14;UBERON:0001911,4.08e-07,4;UBERON:0005333,4.08e-07,4;UBERON:0008425,4.08e-07,4;UBERON:0005311,4.08e-07,4 | |||
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| ||
|short_description=p7@SCNN1A | |||
}} | }} |
Latest revision as of 20:40, 19 September 2015
Short description: | p7@SCNN1A |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_SCNN1A_5end |
Coexpression cluster: | C3316_Amniotic_seminal_ductal_ductus_lung_tubular_Placental |
Association with transcript: | 157bp_to_ENST00000542436_5end |
EntrezGene: | SCNN1A |
HGNC: | 10599 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 8.92e-14 | 253 |
placental epithelial cell | 5.15e-10 | 3 |
kidney tubule cell | 2.59e-09 | 10 |
nephron tubule epithelial cell | 2.59e-09 | 10 |
brush border epithelial cell | 5.07e-09 | 3 |
kidney cortex tubule cell | 5.07e-09 | 3 |
epithelial cell of proximal tubule | 5.07e-09 | 3 |
epithelial cell of nephron | 4.24e-08 | 15 |
kidney cortical cell | 1.24e-07 | 12 |
renal cortical epithelial cell | 1.24e-07 | 12 |
epithelial cell of pancreas | 1.44e-07 | 4 |
amniotic epithelial cell | 2.08e-07 | 2 |
mammary gland epithelial cell | 4.08e-07 | 4 |
kidney cell | 5.04e-07 | 17 |
kidney epithelial cell | 5.04e-07 | 17 |
transitional epithelial cell | 5.69e-07 | 4 |
urothelial cell | 5.69e-07 | 4 |
Merkel cell | 6.05e-07 | 2 |
Ontology term | p-value | n |
---|---|---|
adenocarcinoma | 1.11e-07 | 25 |
pancreatic cancer | 1.44e-07 | 4 |
carcinoma | 2.44e-07 | 106 |
pancreas adenocarcinoma | 4.14e-07 | 2 |
pancreatic carcinoma | 4.14e-07 | 2 |
pancreatic ductal adenocarcinoma | 4.14e-07 | 2 |
tubular adenocarcinoma | 6.79e-07 | 2 |