FFCP PHASE1:Hg19::chr3:125775961..125775982,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=54946 | |EntrezGene=54946 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=31046 | |HGNC=31046 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-280bp_to_ENST00000383598_5end | |association_with_transcript=-280bp_to_ENST00000383598_5end | ||
|cluster_id=chr3:125775961..125775982,- | |||
|coexpression_cluster_id=C106 | |||
|description=CAGE_peak_4_at_SLC41A3_5end | |description=CAGE_peak_4_at_SLC41A3_5end | ||
|id=chr3:125775961..125775982,- | |id=chr3:125775961..125775982,- | ||
|ontology_enrichment_celltype=CL:0000066!3.68e-21!254;CL:0002076!5.28e-16!43;CL:0000223!5.50e-16!59;CL:0002251!4.92e-10!21;CL:0002150!2.33e-07!3;CL:0000861!2.33e-07!3 | |ontology_enrichment_celltype=CL:0000066!3.68e-21!254;CL:0002076!5.28e-16!43;CL:0000223!5.50e-16!59;CL:0002251!4.92e-10!21;CL:0002150!2.33e-07!3;CL:0000861!2.33e-07!3 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,2.32e-11,253 | |||
|ontology_enrichment_development_v019=UBERON:0008947;2.58e-17;29 | |||
|ontology_enrichment_disease=DOID:305!7.01e-21!106;DOID:0050687!1.06e-16!143;DOID:162!2.41e-13!235;DOID:14566!9.88e-13!239;DOID:1749!1.77e-11!14 | |||
|ontology_enrichment_disease_v019=DOID:305;1.34e-07;106!DOID:1749;1.74e-07;14 | |||
|ontology_enrichment_disease_v019_2=DOID:305,3.88e-23,106;DOID:0050687,4.66e-16,143;DOID:162,1.31e-12,235;DOID:14566,3.01e-12,239;DOID:1749,1.65e-07,14 | |||
|ontology_enrichment_uberon=UBERON:0001737!1.21e-18!9;UBERON:0004119!3.95e-16!169;UBERON:0000925!3.95e-16!169;UBERON:0006595!3.95e-16!169;UBERON:0001007!9.47e-13!155;UBERON:0001555!9.47e-13!155;UBERON:0007026!9.47e-13!155;UBERON:0000077!3.35e-11!130;UBERON:0008947!6.92e-11!38;UBERON:0003258!6.92e-11!38;UBERON:0004921!1.25e-10!129;UBERON:0004185!1.25e-10!129;UBERON:0001004!9.22e-10!72;UBERON:0001041!1.29e-09!98;UBERON:0000065!2.43e-09!53;UBERON:0000072!3.42e-09!46;UBERON:0001557!4.05e-09!19;UBERON:0001048!4.28e-07!168 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;5.79e-59;9!UBERON:0001557;5.79e-59;9!UBERON:0000072;8.91e-16;37!UBERON:0000065;6.11e-13;44!UBERON:0001004;3.70e-08;65!UBERON:0001000;1.49e-07;1!UBERON:0000997;1.49e-07;1!UBERON:0005056;1.49e-07;1!UBERON:0004176;1.49e-07;1!UBERON:0005352;1.49e-07;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001737,5.80e-59,9;UBERON:0001557,3.39e-27,19;UBERON:0008947,9.24e-16,38;UBERON:0003258,9.24e-16,38;UBERON:0000072,2.08e-12,47;UBERON:0000065,1.42e-10,54;UBERON:0001004,6.91e-09,74;UBERON:0001007,2.74e-08,145;UBERON:0001555,2.74e-08,145;UBERON:0007026,2.74e-08,145;UBERON:0004921,4.98e-08,118;UBERON:0000997,1.26e-07,1;UBERON:0005056,1.26e-07,1;UBERON:0001000,1.87e-07,1;UBERON:0005352,1.87e-07,1;UBERON:0004119,3.17e-07,160;UBERON:0000925,3.17e-07,160;UBERON:0006595,3.17e-07,160;UBERON:0001041,3.36e-07,87 | |||
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| ||
|short_description=p4@SLC41A3 | |short_description=p4@SLC41A3 | ||
}} | }} |
Latest revision as of 03:40, 20 September 2015
Short description: | p4@SLC41A3 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_SLC41A3_5end |
Coexpression cluster: | C106_Hep2_epitheloid_placenta_cervical_rectal_anaplastic_glassy |
Association with transcript: | -280bp_to_ENST00000383598_5end |
EntrezGene: | SLC41A3 |
HGNC: | 31046 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 2.32e-11 | 253 |
Ontology term | p-value | n |
---|---|---|
larynx | 5.80e-59 | 9 |
upper respiratory tract | 3.39e-27 | 19 |
respiratory primordium | 9.24e-16 | 38 |
endoderm of foregut | 9.24e-16 | 38 |
segment of respiratory tract | 2.08e-12 | 47 |
respiratory tract | 1.42e-10 | 54 |
respiratory system | 6.91e-09 | 74 |
digestive system | 2.74e-08 | 145 |
digestive tract | 2.74e-08 | 145 |
primitive gut | 2.74e-08 | 145 |
subdivision of digestive tract | 4.98e-08 | 118 |
mammalian vulva | 1.26e-07 | 1 |
external female genitalia | 1.26e-07 | 1 |
vas deferens | 1.87e-07 | 1 |
spermatic cord | 1.87e-07 | 1 |
endoderm-derived structure | 3.17e-07 | 160 |
endoderm | 3.17e-07 | 160 |
presumptive endoderm | 3.17e-07 | 160 |
foregut | 3.36e-07 | 87 |
Ontology term | p-value | n |
---|---|---|
carcinoma | 3.88e-23 | 106 |
cell type cancer | 4.66e-16 | 143 |
cancer | 1.31e-12 | 235 |
disease of cellular proliferation | 3.01e-12 | 239 |
squamous cell carcinoma | 1.65e-07 | 14 |