FFCP PHASE1:Hg19::chr4:106157017..106157029,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr4:106157017..106157029,+
|short_description=p7@TET2
|description=CAGE_peak_7_at_TET2_5end
|association_with_transcript=104bp_to_AK027819_5end
|EntrezGene=54...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=54790 | |EntrezGene=54790 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=25941 | |HGNC=25941 | ||
|TSSclassifier=strong | |||
|UniProt=Q6N021 | |UniProt=Q6N021 | ||
|association_with_transcript=104bp_to_AK027819_5end | |||
|cluster_id=chr4:106157017..106157029,+ | |||
|coexpression_cluster_id=C13 | |||
|description=CAGE_peak_7_at_TET2_5end | |||
|id=chr4:106157017..106157029,+ | |||
|ontology_enrichment_celltype=CL:0002057!1.59e-23!42;CL:0000860!8.88e-23!45;CL:0002009!3.76e-21!65;CL:0000766!1.36e-20!76;CL:0002194!3.86e-20!63;CL:0000576!3.86e-20!63;CL:0000040!3.86e-20!63;CL:0000559!3.86e-20!63;CL:0000557!6.36e-20!71;CL:0000738!2.39e-19!140;CL:0000839!6.37e-19!70;CL:0002087!1.45e-18!119;CL:0002031!2.13e-17!124;CL:0000763!2.18e-17!112;CL:0000049!2.18e-17!112;CL:0002032!2.25e-17!165;CL:0000837!2.25e-17!165;CL:0000037!4.94e-17!172;CL:0000566!4.94e-17!172;CL:0000988!1.23e-14!182 | |||
|ontology_enrichment_celltype_v019=CL:0000860;8.97e-65;33!CL:0002057;8.97e-65;33!CL:0000473;1.08e-47;39!CL:0000234;1.08e-47;39!CL:0000576;4.96e-30;48!CL:0000766;4.08e-21;69!CL:0000763;9.33e-14;100!CL:0000775;2.00e-10;3!CL:0002087;1.03e-09;104!CL:0000738;4.57e-09;136!CL:0000988;6.12e-07;177 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,6.24e-58,42;CL:0002057,6.24e-58,42;CL:0000473,3.69e-53,48;CL:0000234,3.69e-53,48;CL:0000766,2.54e-42,72;CL:0002009,9.66e-42,61;CL:0002194,1.01e-40,59;CL:0000576,1.01e-40,59;CL:0000040,1.01e-40,59;CL:0000559,1.01e-40,59;CL:0000557,3.02e-37,67;CL:0000839,1.57e-35,66;CL:0000763,8.40e-34,108;CL:0000049,8.40e-34,108;CL:0000738,7.92e-31,136;CL:0002087,1.15e-28,115;CL:0002032,1.77e-28,161;CL:0000837,1.77e-28,161;CL:0000037,3.20e-28,168;CL:0002031,5.28e-27,120;CL:0000988,3.61e-26,177;CL:0000775,1.89e-10,3;CL:0000134,2.08e-08,354;CL:0002320,5.06e-08,361 | |||
|ontology_enrichment_development_v019=CL:0002057;1.73e-42;42!CL:0000049;3.67e-11;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!9.22e-18!102;UBERON:0003061!9.22e-18!102;UBERON:0002371!1.26e-16!80;UBERON:0001474!2.55e-15!86;UBERON:0002193!9.80e-15!112;UBERON:0004765!3.28e-12!101;UBERON:0001434!3.28e-12!101;UBERON:0002405!3.54e-10!115 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,7.96e-32,76;UBERON:0002390,7.78e-30,98;UBERON:0003061,7.78e-30,98;UBERON:0001474,7.19e-29,82;UBERON:0002193,3.47e-26,108;UBERON:0004765,1.53e-25,90;UBERON:0002405,1.93e-24,93;UBERON:0001434,3.93e-22,100;UBERON:0002204,7.65e-11,167;UBERON:0003081,1.94e-10,203;UBERON:0002384,4.75e-08,371 | |||
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| ||
|short_description=p7@TET2 | |||
}} | }} |
Latest revision as of 06:14, 20 September 2015
Short description: | p7@TET2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_TET2_5end |
Coexpression cluster: | C13_Neutrophils_Eosinophils_CD14_Monocytederived_Whole_Peripheral_CD4 |
Association with transcript: | 104bp_to_AK027819_5end |
EntrezGene: | TET2 |
HGNC: | 25941 |
UniProt: | Q6N021 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 6.24e-58 | 42 |
CD14-positive, CD16-negative classical monocyte | 6.24e-58 | 42 |
defensive cell | 3.69e-53 | 48 |
phagocyte | 3.69e-53 | 48 |
myeloid leukocyte | 2.54e-42 | 72 |
macrophage dendritic cell progenitor | 9.66e-42 | 61 |
monopoietic cell | 1.01e-40 | 59 |
monocyte | 1.01e-40 | 59 |
monoblast | 1.01e-40 | 59 |
promonocyte | 1.01e-40 | 59 |
granulocyte monocyte progenitor cell | 3.02e-37 | 67 |
myeloid lineage restricted progenitor cell | 1.57e-35 | 66 |
myeloid cell | 8.40e-34 | 108 |
common myeloid progenitor | 8.40e-34 | 108 |
leukocyte | 7.92e-31 | 136 |
nongranular leukocyte | 1.15e-28 | 115 |
hematopoietic oligopotent progenitor cell | 1.77e-28 | 161 |
hematopoietic multipotent progenitor cell | 1.77e-28 | 161 |
hematopoietic stem cell | 3.20e-28 | 168 |
hematopoietic lineage restricted progenitor cell | 5.28e-27 | 120 |
hematopoietic cell | 3.61e-26 | 177 |
neutrophil | 1.89e-10 | 3 |
mesenchymal cell | 2.08e-08 | 354 |
connective tissue cell | 5.06e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 7.96e-32 | 76 |
hematopoietic system | 7.78e-30 | 98 |
blood island | 7.78e-30 | 98 |
bone element | 7.19e-29 | 82 |
hemolymphoid system | 3.47e-26 | 108 |
skeletal element | 1.53e-25 | 90 |
immune system | 1.93e-24 | 93 |
skeletal system | 3.93e-22 | 100 |
musculoskeletal system | 7.65e-11 | 167 |
lateral plate mesoderm | 1.94e-10 | 203 |
connective tissue | 4.75e-08 | 371 |