FFCP PHASE1:Hg19::chr9:120466535..120466546,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=7099 | |EntrezGene=7099 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11850 | |HGNC=11850 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-63bp_to_ENST00000394487_5end | |association_with_transcript=-63bp_to_ENST00000394487_5end | ||
|cluster_id=chr9:120466535..120466546,+ | |||
|coexpression_cluster_id=C2 | |||
|description=CAGE_peak_8_at_TLR4_5end | |description=CAGE_peak_8_at_TLR4_5end | ||
|id=chr9:120466535..120466546,+ | |id=chr9:120466535..120466546,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.76e-15!42;CL:0000860!1.75e-14!45;CL:0000766!6.10e-13!76;CL:0000839!5.70e-09!70;CL:0000557!3.40e-08!71;CL:0002194!3.99e-08!63;CL:0000576!3.99e-08!63;CL:0000040!3.99e-08!63;CL:0000559!3.99e-08!63;CL:0002009!1.87e-07!65 | |ontology_enrichment_celltype=CL:0002057!1.76e-15!42;CL:0000860!1.75e-14!45;CL:0000766!6.10e-13!76;CL:0000839!5.70e-09!70;CL:0000557!3.40e-08!71;CL:0002194!3.99e-08!63;CL:0000576!3.99e-08!63;CL:0000040!3.99e-08!63;CL:0000559!3.99e-08!63;CL:0002009!1.87e-07!65 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.88e-18;33!CL:0002057;1.88e-18;33!CL:0000473;7.15e-14;39!CL:0000234;7.15e-14;39!CL:0000766;1.87e-11;69!CL:0000576;4.42e-10;48!CL:0000094;2.92e-09;8!CL:0002334;2.90e-08;12!CL:0000775;2.20e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,1.77e-21,72;CL:0000860,4.99e-19,42;CL:0002057,4.99e-19,42;CL:0000473,3.76e-17,48;CL:0000234,3.76e-17,48;CL:0000839,1.05e-14,66;CL:0000557,2.29e-14,67;CL:0002194,2.32e-13,59;CL:0000576,2.32e-13,59;CL:0000040,2.32e-13,59;CL:0000559,2.32e-13,59;CL:0002009,1.08e-12,61;CL:0000763,5.07e-11,108;CL:0000049,5.07e-11,108;CL:0000094,3.10e-09,8;CL:0002334,2.46e-08,12;CL:0000775,2.23e-07,3;CL:0000738,6.04e-07,136 | |||
|ontology_enrichment_development_v019=CL:0002057;4.30e-14;42 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!1.34e-11!112;UBERON:0002390!2.85e-11!102;UBERON:0003061!2.85e-11!102;UBERON:0002371!1.18e-08!80;UBERON:0003081!2.68e-08!216;UBERON:0007023!4.46e-08!115;UBERON:0001474!7.91e-08!86;UBERON:0001009!4.35e-07!113 | |||
|ontology_enrichment_uberon_v019=UBERON:0003688;8.76e-08;6!UBERON:0002358;8.76e-08;6!UBERON:0003684;8.76e-08;6!UBERON:0001178;8.76e-08;6 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,1.89e-18,108;UBERON:0002390,3.82e-18,98;UBERON:0003061,3.82e-18,98;UBERON:0002405,1.18e-14,93;UBERON:0002371,5.42e-14,76;UBERON:0001474,2.38e-12,82;UBERON:0004765,2.54e-11,90;UBERON:0003081,2.09e-09,203;UBERON:0001434,2.30e-09,100;UBERON:0002204,5.44e-09,167;UBERON:0000926,1.24e-08,315;UBERON:0004120,1.24e-08,315;UBERON:0006603,1.24e-08,315;UBERON:0003688,4.78e-08,6;UBERON:0002358,4.78e-08,6;UBERON:0003684,4.78e-08,6;UBERON:0001178,4.78e-08,6;UBERON:0004457,5.07e-07,12;UBERON:0000042,5.07e-07,12 | |||
|phase1_expression=6.54042165374004,3.42560838225573,4.79244973926302,0,1.78784437770915,1.74467704820074,0,0,0.261185628199839,0,0,0,0,0.495065411840187,0,0,0,0,0,0,0,0,0.286235987131057,0.273748850145768,0.251085279189606,0,0,0,2.36018566109342,0.767658796194425,0.309632246632152,0,0,0,0,0,0,1.10799081706375,2.00544447470142,1.08505435357926,0.223915474239924,0.32389366601898,0,1.01778767145695,0.755751887377619,0.242584061187816,2.32429036905685,0.822335776043652,1.85823822537062,2.01384674625505,1.7931249457037,2.12834006899727,2.41321976515633,1.93645405075148,2.70852973188684,1.12945403725563,0.272906150057846,0.449446968890169,3.36692281607993,0.320929027076094,4.47535988059329,0.659702600373432,0.598390972864896,1.27867425159808,1.7412554317715,1.70215567407342,2.4912889959823,2.76373531782418,1.0429658368404,2.6062661364614,1.21079900526674,2.94622108790052,6.64571013625857,0.422510572623884,0.212604299965044,0,0.898629049171961,0.450530678524519,0.32145117339416,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.150575119077773,0,0,0.236777252044017,0,0,0,0,0,0.670700859703636,0.12786256184353,0,0,0.144846518960824,0,0,0.283604451492204,1.10864698731282,0.790513071238134,0.130979075497713,0,0,0,0,0,0,0,0,0.79504962946682,0,0,0.56530794192401,0.419499436209906,0.825354125820202,0,1.03366703667732,2.49036383880697,1.00416183829401,0,0,0.24406205754817,0,0,0.625098097988558,0.22452937262617,0.450445921933289,0,0.949265659568129,0.183201743930407,13.1780417436063,34.9002237733493,0,1.49091585508596,2.15271869829786,0.662045904066094,0.286836620748814,0.709336764396714,0,0,0.74000264525148,0.622422070799533,0.134710672069688,0.326923806226917,0,2.30470369792,0,0.624320153660641,0,0.597794722207204,0,0,0,0,0.122834317311768,0.103325781175765,0,0,0,0,0,0,0,0,0,0,0.907457465280168,0,0,0.211931901159562,0.300091096084402,0,0.515281080091258,0.558350568994769,0.675105328965065,0,0,0.0920498986422993,0,0,0,0,0,0.272746120590835,0,0,0,0,0,0,0,0,0,0,2.78620756819187,0.721879481669586,0,0,0,0.110293972732394,0,0.237270619111097,0.134831308160164,0,0.38474715694639,0,0,0,0,0,0,0.590789906681404,0,0,0.857839051492628,0,0,0,0,0.325808305310325,0,5.77325368101093,0.115930404975077,1.6437217193015,0.144366447761074,0,0,0,0,0,0,0,0,0,0,0.806026704325635,0.290633938513962,0.383382679165211,2.46331618947972,2.81754988842323,0,1.29707958075265,0.37872730027914,0,0,0,0,0.102827492703324,0.600686115687835,0.285826432630578,0.336393253036082,0.43596006883328,2.42016343209135,0.258543431515556,0,0.845302752556,1.32969058292435,0,0.257207374262142,0,0.532844358032199,0.142977993658148,0,0,0.65147236858747,0,0,0.904318131178758,3.48613383440118,0.299918973546171,1.2162378064119,0,0,0.958499421966331,0,0,4.48822050669496,2.87666851570537,1.79060963239896,0,0.197030760201927,0,0.128343036279748,0.76228387266739,0,0,0,0,29.2112739339401,14.9580729602012,54.2884322601206,0.613457458595699,1.00034104211935,0.271265023699736,3.95144636908534,1.78428988797162,2.68094105557689,1.63997980989798,0.300946099727719,0,2.0694614258501,0,0.368738337083406,0,0,0,0.206768026122887,0.862856803274467,0.320182673410333,0,0,0,2.72918588600655,1.53461973288062,2.24528075546459,3.45975702990393,6.14048698880044,1.76939313257968,1.48418066444991,0.308419387605311,1.24293207719189,0.821271560138091,0,0.116210378459959,0,0.601519410909855,0,0.34444334449382,0.182091168006717,0,0,0.462092022626489,0,1.46139224653261,0.211103257785751,0,0,0.863663664408557,0,0,0,0,0,0,0,0.261435451024901,0,0,0,0.412164046590889,0.27470839445503,0,0,0,0,0,0,0.15350367472613,0,0.214840489736547,0.290033387828457,0,0.0890320356467374,0,0,0.510450849978337,0,0,0,0,1.54016790088044,1.59691809095107,0.869932992075073,0.9266210955196,0.858749320451947,1.116475108079,1.2655176988749,4.19386426632415,0,0,0,0,0.359744915166629,0.54907405947211,0.235624804691373,1.41527737101321,3.17020642346017,0,0,3.65570234446927,0,0,0,0,0.551365343546124,0.66343897524122,1.31535265576129,0,0,0,0,0,0.143411352204052,0,0,0,0.422215270595328,0,0.379473173765715,0,0,0,0,0.376575203107117,0,0,0,0,1.01489521846434,1.52927441428475,3.41788312304498,2.85878130549347,2.05681136543097,0.648473311192717,0.540031437238115,3.17250070517708,0,0,0,0,0,0,0,0,0,0,0,0,0,0.626719583092093,0,0,0.1605880751037,0,0,0,0,0,0,0.781552381608161,0,0,0,0,0,0,0.879049075631364,0,0,0,0,0,0,1.9882952955326,0.703347082052564,0,0,0,0.398495976502139,0,0,2.0453736500431,0,0.622079175323615,0,0,0,0.591860433821602,4.7896618469388,4.44547960578548,0,0.371072392647405,0,0,0,0,0,0,0,0,0,0,0.885741385813839,0.241192877250816,0,0.552896299656123,0,0.658156191461918,0,0,0.307801034015188,1.70913083770502,0,0,0,0,0.366390373607449,0,0,0,0.166211681900156,0,0,0,0,0.635746315921515,0,0,0,0,0,0.530745387020035,0,0,0,0,0.471807930864739,0.802577647298789,0,0,0.19566461893209,0,0,0,0,0.505492637027904,0,0,2.65861549082874,0.661983911750998,1.88359751044335,0,0,0.554698692052555,0,0,0,0.17472666824203,0,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| ||
|short_description=p8@TLR4 | |short_description=p8@TLR4 | ||
}} | }} |
Latest revision as of 18:49, 24 September 2015
Short description: | p8@TLR4 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_TLR4_5end |
Coexpression cluster: | C2_Eosinophils_Neutrophils_CD14_Whole_Basophils_Peripheral_Mast |
Association with transcript: | -63bp_to_ENST00000394487_5end |
EntrezGene: | TLR4 |
HGNC: | 11850 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 1.77e-21 | 72 |
classical monocyte | 4.99e-19 | 42 |
CD14-positive, CD16-negative classical monocyte | 4.99e-19 | 42 |
defensive cell | 3.76e-17 | 48 |
phagocyte | 3.76e-17 | 48 |
myeloid lineage restricted progenitor cell | 1.05e-14 | 66 |
granulocyte monocyte progenitor cell | 2.29e-14 | 67 |
monopoietic cell | 2.32e-13 | 59 |
monocyte | 2.32e-13 | 59 |
monoblast | 2.32e-13 | 59 |
promonocyte | 2.32e-13 | 59 |
macrophage dendritic cell progenitor | 1.08e-12 | 61 |
myeloid cell | 5.07e-11 | 108 |
common myeloid progenitor | 5.07e-11 | 108 |
granulocyte | 3.10e-09 | 8 |
preadipocyte | 2.46e-08 | 12 |
neutrophil | 2.23e-07 | 3 |
leukocyte | 6.04e-07 | 136 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 1.89e-18 | 108 |
hematopoietic system | 3.82e-18 | 98 |
blood island | 3.82e-18 | 98 |
immune system | 1.18e-14 | 93 |
bone marrow | 5.42e-14 | 76 |
bone element | 2.38e-12 | 82 |
skeletal element | 2.54e-11 | 90 |
lateral plate mesoderm | 2.09e-09 | 203 |
skeletal system | 2.30e-09 | 100 |
musculoskeletal system | 5.44e-09 | 167 |
mesoderm | 1.24e-08 | 315 |
mesoderm-derived structure | 1.24e-08 | 315 |
presumptive mesoderm | 1.24e-08 | 315 |
omentum | 4.78e-08 | 6 |
peritoneum | 4.78e-08 | 6 |
abdominal cavity | 4.78e-08 | 6 |
visceral peritoneum | 4.78e-08 | 6 |
cavity lining | 5.07e-07 | 12 |
serous membrane | 5.07e-07 | 12 |