FFCP PHASE1:Hg19::chr3:130612974..130612996,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:130612974..130612996,+ to FFCP PHASE1:Hg19::chr3:130612974..130612996,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=27032 | |EntrezGene=27032 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=13211 | |HGNC=13211 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-25bp_to_ENST00000504948,ENST00000513801,uc003enk.2,uc003enl.2,uc003enm.2,uc003enn.2_5end | |||
|cluster_id=chr3:130612974..130612996,+ | |||
|description=CAGE_peak_7_at_ATP2C1_5end | |||
|id=chr3:130612974..130612996,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.84e-14!180;CL:0000359!2.65e-11!32;CL:0000220!4.27e-10!246;CL:0002321!6.20e-10!248;CL:0000057!4.63e-09!75;CL:0000192!6.85e-09!42;CL:0000514!6.85e-09!42;CL:0000012!6.78e-08!682;CL:0000548!2.21e-07!679;CL:0000004!2.21e-07!679;CL:0000255!2.21e-07!679;CL:0000144!6.26e-07!625;CL:0002620!9.76e-07!23 | |||
|ontology_enrichment_celltype_v019=CL:0000359;6.28e-13;32!CL:0000192;3.31e-08;43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000359,2.17e-13,32;CL:0000057,5.17e-11,76;CL:0000192,6.26e-11,43;CL:0000514,6.26e-11,43;CL:0002321,1.37e-08,250;CL:0000187,3.46e-07,55;CL:0000680,4.48e-07,58;CL:0000056,4.48e-07,58;CL:0000355,4.48e-07,58;CL:0000393,6.99e-07,61;CL:0000211,6.99e-07,61 | |||
|ontology_enrichment_development_v019=CL:0000514;3.31e-08;43 | |||
|ontology_enrichment_disease=DOID:193!6.95e-10!29;DOID:120!3.63e-09!27;DOID:2394!3.66e-09!14 | |||
|ontology_enrichment_disease_v019=DOID:193;7.64e-12;29!DOID:120;3.67e-11;27!DOID:2394;5.75e-11;14 | |||
|ontology_enrichment_disease_v019_2=DOID:193,8.42e-12,29;DOID:2394,4.98e-11,14;DOID:120,6.58e-11,27 | |||
|ontology_enrichment_uberon=UBERON:0005256!2.98e-09!143;UBERON:0004872!1.06e-08!84;UBERON:0001637!1.95e-08!42;UBERON:0003509!1.95e-08!42;UBERON:0004572!1.95e-08!42;UBERON:0000914!4.68e-08!83;UBERON:0002329!4.68e-08!83;UBERON:0003077!4.68e-08!83;UBERON:0003059!4.68e-08!83;UBERON:0007282!4.68e-08!83;UBERON:0009618!4.68e-08!83;UBERON:0007285!4.68e-08!83;UBERON:0003914!5.39e-08!118;UBERON:0001981!6.76e-08!60;UBERON:0007500!6.76e-08!60;UBERON:0004537!6.76e-08!60;UBERON:0006965!6.76e-08!60;UBERON:0000486!3.84e-07!82;UBERON:0002049!4.58e-07!79;UBERON:0007798!4.58e-07!79;UBERON:0000490!6.80e-07!138;UBERON:0004290!6.86e-07!70 | |||
|ontology_enrichment_uberon_v019=UBERON:0001637;1.28e-07;42!UBERON:0003509;1.28e-07;42!UBERON:0004572;1.28e-07;42!UBERON:0004573;3.89e-07;33!UBERON:0004571;3.89e-07;33 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001637,5.48e-10,42;UBERON:0003509,5.48e-10,42;UBERON:0004572,5.48e-10,42;UBERON:0004872,6.13e-09,83;UBERON:0003914,6.98e-09,117;UBERON:0003104,8.67e-08,160;UBERON:0009142,8.67e-08,160;UBERON:0007500,8.70e-08,59;UBERON:0001981,8.70e-08,59;UBERON:0004537,8.70e-08,59;UBERON:0006965,8.70e-08,59;UBERON:0002049,1.31e-07,78;UBERON:0007798,1.31e-07,78;UBERON:0004573,1.40e-07,33;UBERON:0004571,1.40e-07,33;UBERON:0002329,2.13e-07,71;UBERON:0003059,2.13e-07,71;UBERON:0007282,2.13e-07,71;UBERON:0004290,2.13e-07,71;UBERON:0009618,2.13e-07,71;UBERON:0005256,2.73e-07,122;UBERON:0000486,2.96e-07,83;UBERON:0000490,3.53e-07,148;UBERON:0003077,4.19e-07,72;UBERON:0007285,4.19e-07,72;UBERON:0007524,8.02e-07,73 | |||
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| ||
|short_description=p7@ATP2C1 | |||
}} | }} |
Latest revision as of 19:10, 24 September 2015
Short description: | p7@ATP2C1 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_7_at_ATP2C1_5end |
Coexpression cluster: | NA |
Association with transcript: | -25bp_to_ENST00000504948, ENST00000513801, uc003enk.2, uc003enl.2, uc003enm.2, uc003enn.2_5end |
EntrezGene: | ATP2C1 |
HGNC: | 13211 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
vascular associated smooth muscle cell | 2.17e-13 | 32 |
fibroblast | 5.17e-11 | 76 |
smooth muscle cell | 6.26e-11 | 43 |
smooth muscle myoblast | 6.26e-11 | 43 |
embryonic cell | 1.37e-08 | 250 |
muscle cell | 3.46e-07 | 55 |
muscle precursor cell | 4.48e-07 | 58 |
myoblast | 4.48e-07 | 58 |
multi-potent skeletal muscle stem cell | 4.48e-07 | 58 |
electrically responsive cell | 6.99e-07 | 61 |
electrically active cell | 6.99e-07 | 61 |
Ontology term | p-value | n |
---|---|---|
artery | 5.48e-10 | 42 |
arterial blood vessel | 5.48e-10 | 42 |
arterial system | 5.48e-10 | 42 |
splanchnic layer of lateral plate mesoderm | 6.13e-09 | 83 |
epithelial tube | 6.98e-09 | 117 |
mesenchyme | 8.67e-08 | 160 |
entire embryonic mesenchyme | 8.67e-08 | 160 |
epithelial tube open at both ends | 8.70e-08 | 59 |
blood vessel | 8.70e-08 | 59 |
blood vasculature | 8.70e-08 | 59 |
vascular cord | 8.70e-08 | 59 |
vasculature | 1.31e-07 | 78 |
vascular system | 1.31e-07 | 78 |
systemic artery | 1.40e-07 | 33 |
systemic arterial system | 1.40e-07 | 33 |
somite | 2.13e-07 | 71 |
presomitic mesoderm | 2.13e-07 | 71 |
presumptive segmental plate | 2.13e-07 | 71 |
dermomyotome | 2.13e-07 | 71 |
trunk paraxial mesoderm | 2.13e-07 | 71 |
trunk mesenchyme | 2.73e-07 | 122 |
multilaminar epithelium | 2.96e-07 | 83 |
unilaminar epithelium | 3.53e-07 | 148 |
paraxial mesoderm | 4.19e-07 | 72 |
presumptive paraxial mesoderm | 4.19e-07 | 72 |
dense mesenchyme tissue | 8.02e-07 | 73 |
Ontology term | p-value | n |
---|---|---|
reproductive organ cancer | 8.42e-12 | 29 |
ovarian cancer | 4.98e-11 | 14 |
female reproductive organ cancer | 6.58e-11 | 27 |