FFCP PHASE1:Hg19::chr18:9914105..9914116,+: Difference between revisions
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{{FFCP|DPIdataset= | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=9218 | |||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=12648 | |||
|TSSclassifier=strong | |||
|UniProt=Q9P0L0 | |||
|association_with_transcript=106bp_to_ENST00000340541,ENST00000400000_5end | |||
|cluster_id=chr18:9914105..9914116,+ | |||
|coexpression_cluster_id=C6 | |||
|description=CAGE_peak_3_at_VAPA_5end | |||
|id=chr18:9914105..9914116,+ | |||
|ontology_enrichment_celltype=CL:0000860!1.58e-24!45;CL:0000557!2.81e-23!71;CL:0002057!6.18e-23!42;CL:0000766!1.13e-21!76;CL:0002009!1.20e-21!65;CL:0002194!1.92e-20!63;CL:0000576!1.92e-20!63;CL:0000040!1.92e-20!63;CL:0000559!1.92e-20!63;CL:0000839!9.56e-20!70;CL:0000763!6.34e-16!112;CL:0000049!6.34e-16!112;CL:0000012!1.60e-09!682;CL:0000548!5.79e-09!679;CL:0000004!5.79e-09!679;CL:0000255!5.79e-09!679 | |||
|ontology_enrichment_celltype_v019=CL:0000860;1.61e-30;33!CL:0002057;1.61e-30;33!CL:0000473;4.02e-21;39!CL:0000234;4.02e-21;39!CL:0000576;1.37e-17;48!CL:0000766;7.74e-14;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,3.32e-34,42;CL:0002057,3.32e-34,42;CL:0000473,3.09e-29,48;CL:0000234,3.09e-29,48;CL:0000557,6.15e-29,67;CL:0000766,1.15e-28,72;CL:0002009,1.28e-28,61;CL:0002194,1.03e-26,59;CL:0000576,1.03e-26,59;CL:0000040,1.03e-26,59;CL:0000559,1.03e-26,59;CL:0000839,6.26e-25,66;CL:0000763,3.67e-23,108;CL:0000049,3.67e-23,108;CL:0000738,5.08e-11,136;CL:0002032,1.79e-10,161;CL:0000837,1.79e-10,161;CL:0000037,3.18e-10,168;CL:0002031,9.51e-10,120;CL:0000988,3.71e-09,177;CL:0002087,4.04e-09,115;CL:0000048,7.45e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;4.09e-25;42!CL:0000049;1.84e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002371!2.05e-18!80;UBERON:0001474!2.30e-17!86;UBERON:0002204!1.25e-14!167;UBERON:0004765!3.48e-14!101;UBERON:0001434!3.48e-14!101;UBERON:0002390!4.32e-11!102;UBERON:0003061!4.32e-11!102;UBERON:0000926!2.77e-10!448;UBERON:0004120!2.77e-10!448;UBERON:0006603!2.77e-10!448;UBERON:0003081!7.13e-10!216;UBERON:0002405!4.57e-08!115;UBERON:0000923!9.51e-08!604;UBERON:0005291!9.51e-08!604;UBERON:0006598!9.51e-08!604;UBERON:0002532!9.51e-08!604;UBERON:0002050!1.53e-07!605;UBERON:0005423!1.53e-07!605;UBERON:0002193!2.06e-07!112;UBERON:0000480!6.24e-07!626;UBERON:0000467!7.12e-07!625 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,2.82e-23,76;UBERON:0001474,1.74e-21,82;UBERON:0004765,1.15e-18,90;UBERON:0002405,8.95e-16,93;UBERON:0002390,1.25e-15,98;UBERON:0003061,1.25e-15,98;UBERON:0001434,5.03e-15,100;UBERON:0002204,3.10e-13,167;UBERON:0002193,1.29e-12,108;UBERON:0003081,7.22e-11,203;UBERON:0000926,1.86e-07,315;UBERON:0004120,1.86e-07,315;UBERON:0006603,1.86e-07,315;UBERON:0002384,9.24e-07,371 | |||
|phase1_expression=0.363356758541113,0.214100523890983,0.422863212287913,0,0.446961094427288,0,0,0.631719873426831,0.261185628199839,0.491467873003018,0,0.655324116390517,0.791300934685361,0.495065411840187,0.662794751455832,2.6893005858071,0,0.730310090387373,0.975865597581014,1.35433163884467,1.83600622119828,0.940364164434263,0.286235987131057,0.547497700291537,0.502170558379211,0.0764134057479513,0.0821005894499457,0.0787107813136792,3.93364276848904,6.90892916574983,8.66970290570026,0,0.90361775633475,1.47901604066715,0,0.142169232487422,0,20.4978301156795,21.257711431835,26.0413044859022,0.223915474239924,0.32389366601898,0,4.07115068582781,5.29026321164333,2.42584061187816,6.50801303335917,8.22335776043652,7.43295290148249,6.32923263108731,7.94098190240212,6.62150243688039,6.55016793399575,8.39130088658974,10.8341189275473,3.76484679085209,4.91231070104122,3.59557575112135,11.9372718024652,8.34415470397843,8.31138263538754,3.29851300186716,4.58766412529753,2.98357325372886,10.7377418292576,10.2129340444405,2.4912889959823,11.3061899365534,15.644487552606,6.73285418585862,6.05399502633369,9.94349617166425,8.22802207346299,1.05627643155971,1.06302149982522,0.628975936525128,1.46027220490444,1.65194582125657,1.6072558669708,1.14005097496499,0.59675003159727,0.730656615058536,0,0,0,0.426730222566507,0,0,0,0,0.569212969109448,0.587237189370939,0.382273228125229,1.32171328579026,7.28661131875997,0.263384084775077,0.393419540227666,0.393010762749165,0.411202997999018,0,0,0,0,0.445641827540694,0.589211814949674,0.221533894583621,0,0,0.130059347559878,0.164437904603676,0,0.289803085735052,0.14828656316206,0,0,0.113309342697566,0,0,0,0,0,0,0,0.127986611154418,0,0,0,0.604820229674197,0.802320587350522,0.289648807765598,2.43806866313962,0.670700859703636,0.255725123687061,0.722878304769133,0,0.579386075843295,0.795285947051099,0.973269740605272,0.945348171640679,0.886917589850256,0.966182642624386,0.130979075497713,0,0,1.29818957461873,2.08955684759121,1.59549552622638,0.476981248610684,0,0,0.198762407366705,0.860234595106124,0.694281003215189,0.56530794192401,0.838998872419812,0.275118041940067,0.626984899610432,0,0,0,0,0.760272105718513,0.24406205754817,0.367663080345869,0,0.357198913136319,0.44905874525234,0.112611480483322,1.53316637465883,0,0.366403487860815,0,0,0,0,1.51956613997496,1.85372853138506,2.0078563452417,1.77334191099179,2.24271040056923,2.1349799145941,0.49333509683432,0.311211035399766,0.942974704487816,0.980771418680752,1.96764655938411,2.30470369792,0,0.312160076830321,0,0.597794722207204,0.939475989150119,2.42809416552197,1.12360645361799,0,0.245668634623536,0.206651562351531,1.18800285728205,0.247266929278557,0,0,0.168336113954066,0.125118519871964,0.277064115484183,0.877955241761676,0.612975591598039,0.45071417671979,1.02088964844019,1.07633781413317,0.427114777637135,0.847727604638247,0.300091096084402,0.412210116953756,1.28820270022815,0.37223371266318,1.0126579934476,0.487185025805993,0,0.0920498986422993,0,2.13005755509969,1.10827308050404,0.339121184620975,1.15956511897978,0.818238361772504,0.286804595389004,0,0.265059536642971,0,0.414644220061482,0,0,1.56449532329816,3.21620469096443,0,0.464367928031979,0.721879481669586,1.53798840051797,2.19160097101532,0.964044119533928,0.55146986366197,1.52515610864684,2.37270619111097,2.02246962240247,1.56977172100277,2.69323009862473,0.738155454624648,0,0.4115740113314,0,0,0.982827216677626,0.590789906681404,0.441463099414651,0.491953754172454,1.3725424823882,0.658501712451753,1.1240175325762,0.904760751704678,0.0925884451585296,0.325808305310325,0,1.44331342025273,1.04337364477569,0.469634776943287,0.288732895522148,0,0,0,0,0.246217006087397,0.936017060556951,0.594524649154913,0,0.335964256397719,0.425325291727159,1.43293636324557,0,0.766765358330422,7.38994856843915,0.616339038092582,2.28060927094849,0.864719720501769,0.75745460055828,0.190493682876507,0,1.17217447210047,0,0.102827492703324,0.300343057843917,0,3.36393253036082,2.1798003441664,5.20701829328745,0.646358578788889,0,0,0.26593811658487,0,0.257207374262142,0,0,0.285955987316295,0.542621605391443,0.823240336780769,0.325736184293735,1.06617584622764,0.791951872933429,1.50719688529793,0.871533458600294,0.799783929456456,1.2162378064119,0,0,0.718874566474748,0,9.98458335285029,0.434343920002738,0.821905290201534,1.79060963239896,0.112085143993527,1.57624608161542,0.215627574859517,1.15508732651774,1.01637849688985,0,0,0.670065061337395,3.18969375826582,0,2.99161459204025,3.72973962092432,0.24538298343828,1.00034104211935,0.271265023699736,0,0,0.315404830067869,0.234282829985426,0,0,0,1.99267679560631,0.184369168541703,0.60818530127658,1.17480694477644,0.343143423810856,0.413536052245775,2.37285620900479,1.06727557803444,2.12189300012382,1.66435439510497,0,0,0.153461973288062,0.841980283299221,0.128139149255701,0,0.160853921143607,0,0.462629081407967,0.710246901252508,0.739144404124282,1.55776328755086,0.813472649219715,0.241718899183244,0.601519410909855,0.644566922551274,0.459257792658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| |||
|short_description=p3@VAPA | |||
}} |
Latest revision as of 22:39, 24 September 2015
Short description: | p3@VAPA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_VAPA_5end |
Coexpression cluster: | C6_CD14_Eosinophils_Basophils_Peripheral_CD34_Natural_immature |
Association with transcript: | 106bp_to_ENST00000340541, ENST00000400000_5end |
EntrezGene: | VAPA |
HGNC: | 12648 |
UniProt: | Q9P0L0 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 3.32e-34 | 42 |
CD14-positive, CD16-negative classical monocyte | 3.32e-34 | 42 |
defensive cell | 3.09e-29 | 48 |
phagocyte | 3.09e-29 | 48 |
granulocyte monocyte progenitor cell | 6.15e-29 | 67 |
myeloid leukocyte | 1.15e-28 | 72 |
macrophage dendritic cell progenitor | 1.28e-28 | 61 |
monopoietic cell | 1.03e-26 | 59 |
monocyte | 1.03e-26 | 59 |
monoblast | 1.03e-26 | 59 |
promonocyte | 1.03e-26 | 59 |
myeloid lineage restricted progenitor cell | 6.26e-25 | 66 |
myeloid cell | 3.67e-23 | 108 |
common myeloid progenitor | 3.67e-23 | 108 |
leukocyte | 5.08e-11 | 136 |
hematopoietic oligopotent progenitor cell | 1.79e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.79e-10 | 161 |
hematopoietic stem cell | 3.18e-10 | 168 |
hematopoietic lineage restricted progenitor cell | 9.51e-10 | 120 |
hematopoietic cell | 3.71e-09 | 177 |
nongranular leukocyte | 4.04e-09 | 115 |
multi fate stem cell | 7.45e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 2.82e-23 | 76 |
bone element | 1.74e-21 | 82 |
skeletal element | 1.15e-18 | 90 |
immune system | 8.95e-16 | 93 |
hematopoietic system | 1.25e-15 | 98 |
blood island | 1.25e-15 | 98 |
skeletal system | 5.03e-15 | 100 |
musculoskeletal system | 3.10e-13 | 167 |
hemolymphoid system | 1.29e-12 | 108 |
lateral plate mesoderm | 7.22e-11 | 203 |
mesoderm | 1.86e-07 | 315 |
mesoderm-derived structure | 1.86e-07 | 315 |
presumptive mesoderm | 1.86e-07 | 315 |
connective tissue | 9.24e-07 | 371 |