FFCP PHASE1:Hg19::chr6:138428324..138428337,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr6:138428324..138428337,- to FFCP PHASE1:Hg19::chr6:138428324..138428337,-: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=64065 | |EntrezGene=64065 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=17637 | |HGNC=17637 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=140bp_to_DQ892670,EU176724_5end | |||
|cluster_id=chr6:138428324..138428337,- | |||
|coexpression_cluster_id=C1043 | |||
|description=CAGE_peak_4_at_PERP_5end | |||
|id=chr6:138428324..138428337,- | |||
|ontology_enrichment_celltype=CL:0000066!3.13e-20!254;CL:0002076!2.04e-13!43;CL:0000223!8.22e-12!59;CL:0002251!1.15e-08!21;CL:0002321!9.13e-07!248 | |||
|ontology_enrichment_celltype_v019=CL:0002076;2.41e-11;42!CL:0002159;8.23e-10;14!CL:0000244;8.12e-09;4!CL:0000731;8.12e-09;4!CL:0000622;3.27e-08;5!CL:0002251;1.10e-07;20!CL:0002621;2.84e-07;3!CL:0000154;8.22e-07;6 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,8.70e-15,42;CL:0000066,4.61e-13,253;CL:0000223,1.44e-11,58;CL:0002159,9.24e-10,14;CL:0000244,5.74e-09,4;CL:0000731,5.74e-09,4;CL:0000622,3.28e-08,5;CL:0002251,8.36e-08,20;CL:0002621,2.54e-07,3;CL:0002077,4.66e-07,34;CL:0000154,8.23e-07,6 | |||
|ontology_enrichment_development_v019=UBERON:0005795;7.13e-08;10 | |||
|ontology_enrichment_disease=DOID:305!7.58e-08!106 | |||
|ontology_enrichment_disease_v019=DOID:0060084;3.98e-08;3!DOID:127;3.98e-08;3 | |||
|ontology_enrichment_disease_v019_2=DOID:0060084,3.94e-08,3;DOID:127,3.94e-08,3 | |||
|ontology_enrichment_uberon=UBERON:0004119!7.48e-18!169;UBERON:0000925!7.48e-18!169;UBERON:0006595!7.48e-18!169;UBERON:0001007!5.54e-15!155;UBERON:0001555!5.54e-15!155;UBERON:0007026!5.54e-15!155;UBERON:0001004!1.03e-14!72;UBERON:0000161!2.11e-12!35;UBERON:0004921!1.64e-11!129;UBERON:0004185!1.64e-11!129;UBERON:0000077!9.41e-10!130;UBERON:0000166!9.73e-10!21;UBERON:0000065!4.87e-09!53;UBERON:0003102!1.56e-08!95;UBERON:0000165!3.68e-08!28;UBERON:0000930!3.68e-08!28;UBERON:0000072!8.15e-08!46;UBERON:0001041!9.28e-08!98;UBERON:0000468!1.27e-07!659;UBERON:0008947!1.42e-07!38;UBERON:0003258!1.42e-07!38;UBERON:0000481!8.93e-07!347 | |||
|ontology_enrichment_uberon_v019=UBERON:0001737;4.75e-10;9!UBERON:0001557;4.75e-10;9!UBERON:0000486;6.25e-08;12!UBERON:0000165;1.40e-07;28!UBERON:0001949;2.84e-07;3!UBERON:0000365;4.82e-07;5!UBERON:0001041;5.97e-07;14 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001004,8.92e-14,74;UBERON:0004119,3.63e-12,160;UBERON:0000925,3.63e-12,160;UBERON:0006595,3.63e-12,160;UBERON:0001737,5.82e-10,9;UBERON:0000065,3.71e-09,54;UBERON:0000161,4.71e-09,36;UBERON:0001557,7.77e-09,19;UBERON:0001007,1.27e-08,145;UBERON:0001555,1.27e-08,145;UBERON:0007026,1.27e-08,145;UBERON:0000166,2.47e-08,22;UBERON:0003102,9.15e-08,99;UBERON:0001041,9.42e-08,87;UBERON:0000072,1.70e-07,47;UBERON:0004921,2.18e-07,118;UBERON:0001949,2.54e-07,3;UBERON:0000365,3.67e-07,5;UBERON:0000165,3.91e-07,29;UBERON:0000930,3.91e-07,29 | |||
|phase1_expression=0,1.71280419112787,0.563817616383885,0,0.446961094427288,0,0,0,0,0,2.09340350391728,0,0.263766978228454,0.495065411840187,0.662794751455832,0,0.602694528023977,0,0.975865597581014,0,0.204000691244253,0,0,0.136874425072884,0.251085279189606,0,0,0,0,0,0.309632246632152,1.83884244895785,0.90361775633475,3.32778609150109,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.188242339542605,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.426730222566507,0,0,0,0,0,0,0,0,0,0,0,0,0,0.167186495390678,0,0,0,0.222820913770347,0,0,0,0,0.130059347559878,0,0,0,0,0,0,0,0.383220493601921,0,0,0,0,0,0,0,0,0,0,0,0.267440195783507,0,0,0,0,0,0,0.289693037921647,0,0,0.189069634328136,0,0.175669571386252,0.261958150995425,0.364295288292542,5.19098219898201,0,0,0,0,0,0,0.198762407366705,0.860234595106124,0,0.56530794192401,0.419499436209906,1.6507082516404,0.417989933073621,0.516833518338658,0.35576626268671,0,0.805658634218294,0,0.732186172644509,0,0,0.357198913136319,0,0,0,0,0,0,0,2.18047026071267,0.496971951695318,0.379891534993739,0,0.286836620748814,0,0,0,0.74000264525148,0,0.538842688278752,0.163461903113459,0.151357427644931,0,0,0,0,0.298897361103602,0.117434498643765,0.161872944368132,0,0.408308342509787,0.491337269247072,0.516628905878827,0,0.247266929278557,0,0,0,0.250237039743928,0.277064115484183,0,0,0.150238058906597,0,0.358779271377724,0,0.211931901159562,0.300091096084402,0.618315175430633,0.257640540045629,0.18611685633159,0,0,0,0.0920498986422993,1.45481451136931,0,0.503760491138201,0.339121184620975,2.51239109112286,1.63647672354501,2.00763216772303,0.121973706129595,0.265059536642971,0.464775771478074,0.414644220061482,0.756962552626885,0,0,0.643240938192885,0,0.464367928031979,0.721879481669586,1.30137480043828,0.842923450390509,1.20505514941741,1.21323370005633,1.52515610864684,1.18635309555548,1.8876383142423,1.56977172100277,0.769494313892781,0,0,0,0,1.26755034821831,0,0.590789906681404,0,0.860919069801795,0.171567810298526,5.81676512665715,2.24803506515239,2.01057944823262,2.40729957412177,0,0,1.44331342025273,0.115930404975077,0.234817388471643,0,0,0.761016608938393,0,1.71697232418975,0,0,0,0,4.36753533317035,2.55195175036296,0.806026704325635,2.3250715081117,1.15014803749563,0,0,0,0,0,0.063497894292169,0,0,0,0.514137463516618,0,0.285826432630578,0.112131084345361,0,0.07333828582095,0.258543431515556,0,0,0,0,0,0,0,0,0,0,0,0,0,1.50719688529793,0,1.49959486773086,0,0,0,0.239624855491583,1.14861935834114,0,0.289562613335158,0.205476322550383,0.179060963239896,0,0,0,0,0.254094624222463,0,0,0,0,0,0,0,0.36807447515742,0.500170521059677,0,1.03985430765404,1.78428988797162,0.315404830067869,0.117141414992713,0.300946099727719,4.5481500811197,1.03473071292505,0,0,0.434418072340414,0.195801157462741,0,0,0,0,0,0,0.907170879989041,0,0.153461973288062,0.841980283299221,0.128139149255701,0,0,0,0.154209693802656,0.532685175939381,0.328508624055237,2.07701771673448,0.581051892299796,0.846016147141356,10.0253235151642,5.43277834721788,0.459257792658427,1.0925470080403,2.88473712910733,0,0.693138033939733,0,0,0.422206515571503,0,0.340187410553031,0.215915916102139,0,0.270946437543853,0,0,0,0.223874754722178,0,0,0,0,0,0.103041011647722,0,0,2.29706215198469,6.50060246036521,0,0,0.154048617114644,0.307007349452259,0.275673144969061,0.107420244868274,0.290033387828457,0.340906509664404,0,4.13212288402445,1.72971060628596,0.127612712494584,1.2138933702666,0.464845549297286,1.25924938732256,0,0.308033580176089,0,0,0.18532421910392,0,0,0.632758849437452,0.571890581771475,0,0,0,0,0.179872457583315,0.54907405947211,0.235624804691373,0.404364963146632,0,0,0,0.487426979262569,0,0,0.707027159768564,0,0,0,0.438450885253763,0.578775534266688,0,0,0,0,0,0,0,0.354761064070598,0.422215270595328,0,0,0,0.769776901804097,0.670302275535787,2.17781969722645,0.376575203107117,1.29151611801369,1.68471475667626,5.32116184244011,1.60806380144872,0,0,0,0,0,0,0,0,0.213648142254946,0,0.980160863924127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.166849141711909,0,0,0,0,0,0,0.748562161632879,0.293016358543788,0,0,0.284136146806413,8.35605696581915,2.67268212749375,8.29333895667927,0,0.140669416410513,0,0,0,0.796991953004279,0,0,0,0,0.311039587661807,0,0.179021174675609,0,0.493217028184668,0,0,0,0,0,0.260427761085233,0.262379999988587,0,1.93448862085349,0,0.472775363535873,0,0,0,0,0.120596438625408,1.52581736317083,0,0.295547618953547,0,0.10893846351899,0.83654246567162,0.769502585037971,0,0.23056390438806,0.538545866458633,0.217294743844016,1.27600463892768,0.457987967009312,1.06606955203727,0,0,0,0,0,0,0,0,0.843992258112108,0.816164040795739,0.141353071433941,0,0,0.0884575645033392,0.611030144933625,0,0,0.104421949505455,0,0,0,0,0,0.242780379534093,0.394584402849391,2.41981432097328,0,0,0.300646838828985,0.414752765588989,0,0,0,0,0,0,2.60339607502696,0,0.435296032902013,0.698906672968121,0,0.967563312890852,0.584714536689484,1.14961639874493,4.84945082442097,0.441280633457501,1.35588444468319,0.274083849293502,0,0,0.782205530939212,0.080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| ||
|short_description=p4@PERP | |||
}} | }} |
Latest revision as of 04:34, 25 September 2015
Short description: | p4@PERP |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_PERP_5end |
Coexpression cluster: | C1043_keratoacanthoma_Prostate_tongue_amniotic_salivary_skin_esophagus |
Association with transcript: | 140bp_to_DQ892670, EU176724_5end |
EntrezGene: | PERP |
HGNC: | 17637 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 8.70e-15 | 42 |
epithelial cell | 4.61e-13 | 253 |
endodermal cell | 1.44e-11 | 58 |
general ecto-epithelial cell | 9.24e-10 | 14 |
transitional epithelial cell | 5.74e-09 | 4 |
urothelial cell | 5.74e-09 | 4 |
acinar cell | 3.28e-08 | 5 |
epithelial cell of alimentary canal | 8.36e-08 | 20 |
gingival epithelial cell | 2.54e-07 | 3 |
ecto-epithelial cell | 4.66e-07 | 34 |
protein secreting cell | 8.23e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
respiratory system | 8.92e-14 | 74 |
endoderm-derived structure | 3.63e-12 | 160 |
endoderm | 3.63e-12 | 160 |
presumptive endoderm | 3.63e-12 | 160 |
larynx | 5.82e-10 | 9 |
respiratory tract | 3.71e-09 | 54 |
orifice | 4.71e-09 | 36 |
upper respiratory tract | 7.77e-09 | 19 |
digestive system | 1.27e-08 | 145 |
digestive tract | 1.27e-08 | 145 |
primitive gut | 1.27e-08 | 145 |
oral opening | 2.47e-08 | 22 |
surface structure | 9.15e-08 | 99 |
foregut | 9.42e-08 | 87 |
segment of respiratory tract | 1.70e-07 | 47 |
subdivision of digestive tract | 2.18e-07 | 118 |
gingival epithelium | 2.54e-07 | 3 |
urothelium | 3.67e-07 | 5 |
mouth | 3.91e-07 | 29 |
stomodeum | 3.91e-07 | 29 |
Ontology term | p-value | n |
---|---|---|
cell type benign neoplasm | 3.94e-08 | 3 |
leiomyoma | 3.94e-08 | 3 |