FFCP PHASE1:Hg19::chr3:14444181..14444192,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 hg19::chr3:14444181..14444192,+ to FFCP PHASE1:Hg19::chr3:14444181..14444192,+: NSchange) |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6533 | |EntrezGene=6533 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11052 | |HGNC=11052 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=33bp_to_ENST00000484191_5end | |||
|cluster_id=chr3:14444181..14444192,+ | |||
|coexpression_cluster_id=C4289 | |||
|description=CAGE_peak_2_at_SLC6A6_5end | |||
|id=chr3:14444181..14444192,+ | |||
|ontology_enrichment_celltype=CL:0000766!1.02e-25!76;CL:0000557!7.08e-23!71;CL:0000763!2.13e-21!112;CL:0000049!2.13e-21!112;CL:0002057!2.61e-21!42;CL:0002009!1.63e-20!65;CL:0000839!5.17e-20!70;CL:0002194!1.23e-19!63;CL:0000576!1.23e-19!63;CL:0000040!1.23e-19!63;CL:0000559!1.23e-19!63;CL:0000860!1.57e-18!45;CL:0000738!6.68e-16!140;CL:0000988!5.06e-14!182;CL:0002032!7.44e-14!165;CL:0000837!7.44e-14!165;CL:0000037!3.80e-13!172;CL:0000566!3.80e-13!172;CL:0002031!8.83e-12!124;CL:0002087!1.84e-10!119;CL:0002320!5.34e-10!365;CL:0000134!8.55e-10!358;CL:0000219!2.13e-07!390 | |||
|ontology_enrichment_celltype_v019=CL:0000860;4.39e-19;33!CL:0002057;4.39e-19;33!CL:0000473;1.62e-18;39!CL:0000234;1.62e-18;39!CL:0000576;2.83e-12;48!CL:0000766;3.13e-12;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000766,3.25e-28,72;CL:0000557,3.16e-25,67;CL:0000473,6.84e-25,48;CL:0000234,6.84e-25,48;CL:0002009,8.88e-23,61;CL:0000763,1.51e-22,108;CL:0000049,1.51e-22,108;CL:0000839,3.10e-22,66;CL:0002194,7.33e-22,59;CL:0000576,7.33e-22,59;CL:0000040,7.33e-22,59;CL:0000559,7.33e-22,59;CL:0000860,8.60e-22,42;CL:0002057,8.60e-22,42;CL:0000738,4.65e-16,136;CL:0000988,8.81e-14,177;CL:0002032,1.58e-13,161;CL:0000837,1.58e-13,161;CL:0000037,6.06e-13,168;CL:0002031,8.73e-12,120;CL:0002087,2.12e-10,115;CL:0002320,7.13e-10,361;CL:0000134,1.14e-09,354;CL:0000219,2.48e-07,386 | |||
|ontology_enrichment_development_v019=CL:0002057;6.46e-16;42!CL:0000049;7.39e-07;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!1.24e-25!102;UBERON:0003061!1.24e-25!102;UBERON:0002193!4.03e-25!112;UBERON:0002371!7.60e-22!80;UBERON:0001474!3.86e-19!86;UBERON:0004765!1.83e-16!101;UBERON:0001434!1.83e-16!101;UBERON:0002405!3.21e-15!115;UBERON:0003081!6.38e-13!216;UBERON:0002384!5.89e-10!375 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,7.28e-28,98;UBERON:0003061,7.28e-28,98;UBERON:0002193,2.21e-27,108;UBERON:0002371,4.54e-24,76;UBERON:0002405,5.72e-23,93;UBERON:0001474,6.29e-21,82;UBERON:0004765,1.47e-18,90;UBERON:0001434,4.27e-17,100;UBERON:0003081,8.60e-15,203;UBERON:0002384,7.24e-10,371;UBERON:0000926,9.40e-07,315;UBERON:0004120,9.40e-07,315;UBERON:0006603,9.40e-07,315 | |||
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| ||
|short_description=p2@SLC6A6 | |||
}} | }} |
Latest revision as of 05:41, 25 September 2015
Short description: | p2@SLC6A6 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_SLC6A6_5end |
Coexpression cluster: | C4289_CD14_Eosinophils_Olfactory_Neutrophils_mucinous_Monocytederived_eye |
Association with transcript: | 33bp_to_ENST00000484191_5end |
EntrezGene: | SLC6A6 |
HGNC: | 11052 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
myeloid leukocyte | 3.25e-28 | 72 |
granulocyte monocyte progenitor cell | 3.16e-25 | 67 |
defensive cell | 6.84e-25 | 48 |
phagocyte | 6.84e-25 | 48 |
macrophage dendritic cell progenitor | 8.88e-23 | 61 |
myeloid cell | 1.51e-22 | 108 |
common myeloid progenitor | 1.51e-22 | 108 |
myeloid lineage restricted progenitor cell | 3.10e-22 | 66 |
monopoietic cell | 7.33e-22 | 59 |
monocyte | 7.33e-22 | 59 |
monoblast | 7.33e-22 | 59 |
promonocyte | 7.33e-22 | 59 |
classical monocyte | 8.60e-22 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.60e-22 | 42 |
leukocyte | 4.65e-16 | 136 |
hematopoietic cell | 8.81e-14 | 177 |
hematopoietic oligopotent progenitor cell | 1.58e-13 | 161 |
hematopoietic multipotent progenitor cell | 1.58e-13 | 161 |
hematopoietic stem cell | 6.06e-13 | 168 |
hematopoietic lineage restricted progenitor cell | 8.73e-12 | 120 |
nongranular leukocyte | 2.12e-10 | 115 |
connective tissue cell | 7.13e-10 | 361 |
mesenchymal cell | 1.14e-09 | 354 |
motile cell | 2.48e-07 | 386 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 7.28e-28 | 98 |
blood island | 7.28e-28 | 98 |
hemolymphoid system | 2.21e-27 | 108 |
bone marrow | 4.54e-24 | 76 |
immune system | 5.72e-23 | 93 |
bone element | 6.29e-21 | 82 |
skeletal element | 1.47e-18 | 90 |
skeletal system | 4.27e-17 | 100 |
lateral plate mesoderm | 8.60e-15 | 203 |
connective tissue | 7.24e-10 | 371 |
mesoderm | 9.40e-07 | 315 |
mesoderm-derived structure | 9.40e-07 | 315 |
presumptive mesoderm | 9.40e-07 | 315 |