FFCP PHASE1:Mm9::chr17:27693588..27693597,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr17:27693588..27693597,+ to FFCP PHASE1:Mm9::chr17:27693588..27693597,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=111241 | |EntrezGene=111241 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1706 | |||
|TSSclassifier=NA | |||
|UniProt=P17095,Q566K0,Q3TVP0 | |UniProt=P17095,Q566K0,Q3TVP0 | ||
|association_with_transcript=0bp_to_NM_001166476,NM_001166477_5end | |||
|cluster_id=chr17:27693588..27693597,+ | |||
|description=CAGE_peak_3_at_Hmga1-rs1_5end | |||
|id=chr17:27693588..27693597,+ | |||
|ontology_enrichment_celltype=CL:0000219!1.15e-09!54;CL:0000063!1.88e-09!66;CL:0000988!5.19e-08!32;CL:0002032!5.19e-08!32;CL:0000037!5.19e-08!32;CL:0000566!5.19e-08!32;CL:0000837!5.19e-08!32;CL:0000144!9.66e-08!121;CL:0000012!9.66e-08!121;CL:0002320!1.24e-07!46;CL:0000134!1.24e-07!46;CL:0000548!1.67e-07!115;CL:0000004!1.67e-07!115;CL:0000255!1.67e-07!115;CL:0002371!7.06e-07!118 | |||
|ontology_enrichment_celltype_v019_2=CL:0000219,1.20e-09,54;CL:0000988,4.27e-08,32;CL:0002032,4.27e-08,32;CL:0000037,4.27e-08,32;CL:0000837,4.27e-08,32;CL:0002320,1.35e-07,46;CL:0000134,1.35e-07,46 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002193!8.55e-12!48;UBERON:0002390!1.63e-11!45;UBERON:0003061!1.63e-11!45;UBERON:0002405!9.02e-11!70;UBERON:0000072!8.85e-10!27;UBERON:0002370!8.93e-09!23;UBERON:0000974!8.93e-09!23;UBERON:0004807!8.93e-09!23;UBERON:0005058!8.93e-09!23;UBERON:0003351!8.93e-09!23;UBERON:0009113!8.93e-09!23;UBERON:0003295!8.93e-09!23;UBERON:0009722!8.93e-09!23;UBERON:0005562!8.93e-09!23;UBERON:0007690!8.93e-09!23;UBERON:0004177!9.64e-09!29;UBERON:0006562!5.58e-08!24;UBERON:0001557!5.58e-08!24;UBERON:0001042!5.58e-08!24;UBERON:0008814!5.58e-08!24;UBERON:0009145!5.58e-08!24;UBERON:0003408!1.16e-07!24;UBERON:0002384!1.24e-07!46;UBERON:0003929!1.49e-07!55;UBERON:0005057!1.95e-07!51;UBERON:0000063!2.47e-07!35;UBERON:0003081!7.70e-07!88 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002193,6.29e-12,48;UBERON:0002405,6.29e-12,48;UBERON:0002390,1.21e-11,45;UBERON:0003061,1.21e-11,45;UBERON:0000072,1.01e-09,27;UBERON:0002370,7.18e-09,23;UBERON:0000974,7.18e-09,23;UBERON:0004807,7.18e-09,23;UBERON:0005058,7.18e-09,23;UBERON:0003351,7.18e-09,23;UBERON:0009113,7.18e-09,23;UBERON:0003295,7.18e-09,23;UBERON:0009722,7.18e-09,23;UBERON:0005562,7.18e-09,23;UBERON:0007690,7.18e-09,23;UBERON:0004177,7.76e-09,29;UBERON:0005057,7.76e-09,29;UBERON:0000153,1.92e-08,43;UBERON:0006562,6.56e-08,24;UBERON:0003408,6.56e-08,24;UBERON:0001557,6.56e-08,24;UBERON:0001042,6.56e-08,24;UBERON:0008814,6.56e-08,24;UBERON:0009145,6.56e-08,24;UBERON:0007811,7.11e-08,36;UBERON:0003929,1.04e-07,55;UBERON:0002384,1.35e-07,46;UBERON:0003081,7.66e-07,87 | |||
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| ||
|short_description=p3@Hmga1-rs1 | |||
}} | }} |
Latest revision as of 03:39, 26 September 2015
Short description: | p3@Hmga1-rs1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Hmga1-rs1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1706 |
Association with transcript: | 0bp_to_NM_001166476, NM_001166477_5end |
EntrezGene: | Hmga1-rs1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
motile cell | 1.20e-09 | 54 |
hematopoietic cell | 4.27e-08 | 32 |
hematopoietic oligopotent progenitor cell | 4.27e-08 | 32 |
hematopoietic stem cell | 4.27e-08 | 32 |
hematopoietic multipotent progenitor cell | 4.27e-08 | 32 |
connective tissue cell | 1.35e-07 | 46 |
mesenchymal cell | 1.35e-07 | 46 |
Ontology term | p-value | n |
---|---|---|
hemolymphoid system | 6.29e-12 | 48 |
immune system | 6.29e-12 | 48 |
hematopoietic system | 1.21e-11 | 45 |
blood island | 1.21e-11 | 45 |
segment of respiratory tract | 1.01e-09 | 27 |
thymus | 7.18e-09 | 23 |
neck | 7.18e-09 | 23 |
respiratory system epithelium | 7.18e-09 | 23 |
hemolymphoid system gland | 7.18e-09 | 23 |
pharyngeal epithelium | 7.18e-09 | 23 |
thymic region | 7.18e-09 | 23 |
pharyngeal gland | 7.18e-09 | 23 |
entire pharyngeal arch endoderm | 7.18e-09 | 23 |
thymus primordium | 7.18e-09 | 23 |
early pharyngeal endoderm | 7.18e-09 | 23 |
hemopoietic organ | 7.76e-09 | 29 |
immune organ | 7.76e-09 | 29 |
anterior region of body | 1.92e-08 | 43 |
pharynx | 6.56e-08 | 24 |
gland of gut | 6.56e-08 | 24 |
upper respiratory tract | 6.56e-08 | 24 |
chordate pharynx | 6.56e-08 | 24 |
pharyngeal arch system | 6.56e-08 | 24 |
pharyngeal region of foregut | 6.56e-08 | 24 |
craniocervical region | 7.11e-08 | 36 |
gut epithelium | 1.04e-07 | 55 |
connective tissue | 1.35e-07 | 46 |
lateral plate mesoderm | 7.66e-07 | 87 |