Personal tools

FFCP PHASE1:Mm9::chr3:145421714..145421728,+: Difference between revisions

From FANTOM5_SSTAR

Jump to: navigation, search
No edit summary
 
(7 intermediate revisions by the same user not shown)
Line 1: Line 1:
{{FFCP
{{FFCP
|id=chr3:145421714..145421728,+
|DHSsupport=NA
|short_description=p2@Ddah1
|DPIdataset=NA
|description=CAGE_peak_2_at_Ddah1_5end
|association_with_transcript=58bp_to_NM_026993,uc008rqr.2_5end
|EntrezGene=69219
|EntrezGene=69219
|HGNC=
|HGNC=
|MCL_coexpression_id=3398
|TSSclassifier=NA
|UniProt=Q3UF01,Q9CWS0
|UniProt=Q3UF01,Q9CWS0
|association_with_transcript=58bp_to_NM_026993,uc008rqr.2_5end
|cluster_id=chr3:145421714..145421728,+
|description=CAGE_peak_2_at_Ddah1_5end
|id=chr3:145421714..145421728,+
|ontology_enrichment_celltype=CL:0000055!4.55e-18!50;CL:0000221!1.26e-15!44;CL:0000133!1.26e-15!44;CL:0002319!1.49e-15!43;CL:0000393!2.94e-12!39;CL:0000211!2.94e-12!39;CL:0002321!7.51e-11!70;CL:0000220!7.51e-11!70;CL:0000540!1.66e-10!33;CL:0000047!1.66e-10!33;CL:0000031!1.66e-10!33;CL:0000404!1.66e-10!33;CL:0000117!1.16e-09!23;CL:0000337!1.16e-09!23
|ontology_enrichment_celltype_v019_2=CL:0000221,2.08e-16,44;CL:0000133,2.08e-16,44;CL:0002319,2.49e-16,43;CL:0000393,7.47e-13,39;CL:0000211,7.47e-13,39;CL:0002321,1.60e-11,70;CL:0000540,5.28e-11,33;CL:0000047,5.28e-11,33;CL:0000031,5.28e-11,33;CL:0000404,5.28e-11,33;CL:0000117,4.11e-10,23;CL:0000337,4.11e-10,23
|ontology_enrichment_disease=
|ontology_enrichment_disease_v019_2=
|ontology_enrichment_uberon=UBERON:0000073!1.63e-25!75;UBERON:0001016!1.63e-25!75;UBERON:0001017!4.38e-25!73;UBERON:0005743!4.38e-25!73;UBERON:0000025!4.41e-19!114;UBERON:0001049!1.50e-18!52;UBERON:0005068!1.50e-18!52;UBERON:0006241!1.50e-18!52;UBERON:0007135!1.50e-18!52;UBERON:0004121!9.25e-18!102;UBERON:0000924!9.25e-18!102;UBERON:0006601!9.25e-18!102;UBERON:0000955!3.62e-17!50;UBERON:0006238!3.62e-17!50;UBERON:0002616!8.83e-17!49;UBERON:0002020!3.12e-16!34;UBERON:0004111!3.85e-16!122;UBERON:0000033!6.49e-14!63;UBERON:0002791!7.64e-14!29;UBERON:0003528!7.64e-14!29;UBERON:0001893!7.64e-14!29;UBERON:0002346!2.29e-13!71;UBERON:0003075!2.29e-13!71;UBERON:0007284!2.29e-13!71;UBERON:0003080!4.95e-13!40;UBERON:0002780!1.29e-12!39;UBERON:0001890!1.29e-12!39;UBERON:0006240!1.29e-12!39;UBERON:0003056!5.47e-11!49;UBERON:0000956!1.13e-10!21;UBERON:0001869!1.13e-10!21;UBERON:0000203!1.13e-10!21;UBERON:0002619!2.19e-08!17;UBERON:0002107!3.04e-08!22;UBERON:0007499!3.04e-08!22;UBERON:0006925!3.04e-08!22;UBERON:0009497!3.04e-08!22;UBERON:0000015!3.04e-08!22;UBERON:0002423!3.04e-08!22;UBERON:0006235!3.04e-08!22;UBERON:0008835!3.04e-08!22;UBERON:0003894!3.04e-08!22;UBERON:0004161!3.04e-08!22;UBERON:0008836!3.04e-08!22;UBERON:0009854!4.77e-08!23;UBERON:0009856!4.77e-08!23;UBERON:0000468!1.48e-07!333;UBERON:0002365!1.68e-07!25;UBERON:0002330!1.68e-07!25
|ontology_enrichment_uberon_v019_2=UBERON:0001016,1.73e-26,75;UBERON:0001017,4.91e-26,73;UBERON:0004121,5.97e-21,95;UBERON:0000924,5.97e-21,95;UBERON:0006601,5.97e-21,95;UBERON:0000073,6.62e-20,54;UBERON:0001049,3.83e-19,52;UBERON:0005068,3.83e-19,52;UBERON:0006241,3.83e-19,52;UBERON:0007135,3.83e-19,52;UBERON:0002346,1.18e-17,64;UBERON:0003075,1.18e-17,64;UBERON:0007284,1.18e-17,64;UBERON:0000025,2.13e-17,114;UBERON:0002020,4.77e-17,34;UBERON:0000955,2.69e-16,47;UBERON:0006238,2.69e-16,47;UBERON:0010371,5.69e-16,73;UBERON:0002616,6.76e-16,46;UBERON:0004111,1.23e-14,122;UBERON:0003528,1.59e-14,29;UBERON:0002791,1.59e-14,29;UBERON:0001893,1.59e-14,29;UBERON:0003080,2.41e-13,40;UBERON:0002780,6.60e-13,39;UBERON:0001890,6.60e-13,39;UBERON:0006240,6.60e-13,39;UBERON:0000956,3.52e-11,21;UBERON:0001869,3.52e-11,21;UBERON:0000203,3.52e-11,21;UBERON:0003056,3.57e-11,49;UBERON:0010314,5.93e-09,92;UBERON:0002619,9.14e-09,17;UBERON:0002107,1.29e-08,22;UBERON:0007499,1.29e-08,22;UBERON:0006925,1.29e-08,22;UBERON:0009497,1.29e-08,22;UBERON:0000015,1.29e-08,22;UBERON:0002423,1.29e-08,22;UBERON:0006235,1.29e-08,22;UBERON:0008835,1.29e-08,22;UBERON:0003894,1.29e-08,22;UBERON:0004161,1.29e-08,22;UBERON:0008836,1.29e-08,22;UBERON:0009854,2.07e-08,23;UBERON:0009856,2.07e-08,23;UBERON:0002365,2.11e-07,25;UBERON:0002330,2.11e-07,25
|phase1_expression=2.08193501236232,0,0.454999239389536,0.30246421130683,0.500895729946347,0.16787927191189,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48677489619386,0,0,0.159992422793407,0.22940928106717,0.57423196411502,0,0,3.42042155021473,1.00812051903972,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,9.06457089424156,7.40051597902456,6.24058957349717,3.9119567217402,51.2359117494049,64.8074239066692,42.5801478972681,19.7380854491761,46.0008205967909,0,0,0,6.68874533693462,2.86533439938757,3.6097046459421,3.84401275633236,4.23192783417626,3.1691570175309,4.06613438482959,0.889294796111139,0.449949858640699,0.988866362566974,2.1314403448383,18.5752068521411,34.1954291736184,11.6132365785495,11.0704869431986,9.25429829946081,13.9968982357864,10.8225585066291,8.69684674426174,8.72193786265951,1.83843757322004,5.50579404996943,9.57655035638908,7.0659005297872,5.53922408466814,6.86157327018072,7.8137005583514,8.65467296904281,5.06486349028512,7.79271063661732,6.48182888042069,7.68807076315156,5.59198337475902,3.55913108665965,4.38315048619356,3.76823835312181,13.7667820317022,4.75979933595425,10.2543606411185,14.9448576012964,12.5447528387254,8.28622078777336,1.70430322578058,1.55871602761721,0.70667914902068,3.52108549441701,2.56652954828636,0,0,0.432982082022428,0.760079596425296,2.02209778005913,6.73684890342454,0.517875767294343,0.29688427812965,0.520455980298408,0.304465478312141,0.691846491768175,0.452167921657868,0.587943535678524,0.376999773989026,1.48316980640624,0,0,3.07357014900077,0.220841518460394,0.969750506270444,1.86391761218122,7.90508151931177,6.49284791121711,0.510914110417183,0,0,0,7.04016005202667,5.94750783664214,9.1727677042391,10.4294592115366,7.16003280524926,8.3115217823824,9.08551073179443,1.73126918545538,0.622034853050465,0.505445516867349,0.420883711772948,1.17108398666433,1.37941262660084,1.98068342785884,1.80845781402858,1.7009124787832,1.92170580427275,2.24884138943349,1.81092359517311,1.5089759505299,1.89106080167819,0.703804496655795,1.7535658594206,2.78047249225598,1.39300866608867,1.02891068203972,1.79130840136644,0,0,0,3.52113813310353,2.11073453982987,1.44049649168812,2.13070262026689,0.983821158737019,1.85120535464854,1.62773761325285,0.804820204198858,0.817357396570186,0.987359099480883,0.164167464079095,0.648550476366846,0.584799949701329,0.878200461164203,0.671032093801859,6.72927835405207,10.3933658503077,0,2.11560453330835,1.49301775374664,1.85789337488351,1.54640953586512,1.81515172161008,0.667134131534611,1.33157938278791,0,0.658795818896044,0.502670417600539,1.39269530428806,1.16978452271472,0,1.08069024937347,0.995706366271836,2.84501851429623,2.39921876480431,5.63538678365402,4.07302655690629,2.71533482034676,3.64706263429657,5.05892296994058,9.15182917473533,9.57692239832386,10.488758933353,16.3048944897932,1.33476084572875,3.73462090715086,2.24862112384854,5.27436315610108,4.3411888755435,4.32863948028414,5.17853047411459,2.91843408195064,4.3929826110093,10.0637744569148,5.95425516269605,7.48890415474945,16.6702059445094,14.8899853223187,12.0610880340842,1.84753190166605,0.757965647081939,1.95557971730431,0.848725428875941,0.704070744865506,1.00503754465089,0,1.75620283072019,4.25614889086716,3.10050565508285,2.55127629851979,1.47476983244164,1.89953480052485,1.3018415272336,0,0,6.88469982226651,0.827810238914197,5.45872005958493,6.91548950893999,6.22952792431367,1.00988370881749,3.78609863299508,5.0757036758563,7.10897212518236,2.15071918157297,3.11918143715352,3.67999490025482,3.64329631507405,3.50707029493574,3.55759000151871,6.42642632843614,0.851640511249612,1.78065603667255,1.30309567482861,0.494910368917606,0,0.728341908464944,0.302323556964751,0.754420319023592,1.47650946440386,0.922305443831782,1.03371317267288,0,1.06949213515416,0,0,0,1.02131881726136,1.08036656418786,2.71653235943784,1.28602221018955,0.886701168211368,2.85390108163313,3.29098041204242,2.13125464380219,0.469343416127421,0.21183207086382,0,0.8244312647074,4.19807509409354,1.74907482291652,1.55184047204077,0.820704498725306,0.291480836629851,12.2380699326936,0,1.03193433981611,0.740778109478847,0.376736914009382,0.136694227721025,0,0,0,0,0,1.10717597753397,1.21991680276109,0.972048067396211,1.04544148007234,0.87345025498471,1.48350781023303,1.73572257023205,0.785267825952089,1.03691978633434,0.621339313086926,0,1.34564891439581,0.66183396182839,2.13896307178452,1.29159823477731,1.85851738039856,1.05621514781179,3.3853140059427,3.14578033277133,1.20792060413003,0.864090018773596,0,0.608175645870493,0.924398614483445,0.129920822977795,0,0.198681354781265,0.240390899039938,0.147689527174577,0.100966449948148,0.0762068066549998,0.100826185136841,0,0,0.116876902181569,0.453460767230423,5.99362074109975,10.5862350799181,5.70807695637867,0.19318959403219,0.750729901804728,0.549454872801795,0.214368379079066,0,6.7770221114048,7.82552902062201,8.02053718815155,8.76451229952807,7.53590771747707,7.55393897389701,6.75022500231806,5.85417564191487,8.60970577069989,6.21312374102184,1.3492355185943,2.39414924040619,4.09760653809922,2.43106717068294,4.40187641518763,3.67687016900028,2.889207461421,3.09052585858341,5.77654577265267,5.30664144703975,5.0695859978048,2.82939512079114,2.62196220915671,3.77748399188729,3.96304735793732,3.81034953026459,3.59241410429052,2.89363830695558,1.64834360321323,3.53277408322554,3.42869252385415,4.61437096014278,2.62279808942053,3.19762116591123,4.51725025993587,2.70766745253365,4.39027134894654,4.47218509444333,3.93831930152999,0.561142271657738,3.79632057997357,2.9551344712669,3.27384834535751,3.56354734727722,2.89359916471712,3.99696924700713,5.6143586026898,2.36358159453128,2.10417165275728,1.10295709559758,2.08681052058379
|phase1_expression=2.08193501236232,0,0.454999239389536,0.30246421130683,0.500895729946347,0.16787927191189,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,3.48677489619386,0,0,0.159992422793407,0.22940928106717,0.57423196411502,0,0,3.42042155021473,1.00812051903972,0,0,0,0,0.288851619751275,0,0,0,0,0,0,0,0,9.06457089424156,7.40051597902456,6.24058957349717,3.9119567217402,51.2359117494049,64.8074239066692,42.5801478972681,19.7380854491761,46.0008205967909,0,0,0,6.68874533693462,2.86533439938757,3.6097046459421,3.84401275633236,4.23192783417626,3.1691570175309,4.06613438482959,0.889294796111139,0.449949858640699,0.988866362566974,2.1314403448383,18.5752068521411,34.1954291736184,11.6132365785495,11.0704869431986,9.25429829946081,13.9968982357864,10.8225585066291,8.69684674426174,8.72193786265951,1.83843757322004,5.50579404996943,9.57655035638908,7.0659005297872,5.53922408466814,6.86157327018072,7.8137005583514,8.65467296904281,5.06486349028512,7.79271063661732,6.48182888042069,7.68807076315156,5.59198337475902,3.55913108665965,4.38315048619356,3.76823835312181,13.7667820317022,4.75979933595425,10.2543606411185,14.9448576012964,12.5447528387254,8.28622078777336,1.70430322578058,1.55871602761721,0.70667914902068,3.52108549441701,2.56652954828636,0,0,0.432982082022428,0.760079596425296,2.02209778005913,6.73684890342454,0.517875767294343,0.29688427812965,0.520455980298408,0.304465478312141,0.691846491768175,0.452167921657868,0.587943535678524,0.376999773989026,1.48316980640624,0,0,3.07357014900077,0.220841518460394,0.969750506270444,1.86391761218122,7.90508151931177,6.49284791121711,0.510914110417183,0,0,0,7.04016005202667,5.94750783664214,9.1727677042391,10.4294592115366,7.16003280524926,8.3115217823824,9.08551073179443,1.73126918545538,0.622034853050465,0.505445516867349,0.420883711772948,1.17108398666433,1.37941262660084,1.98068342785884,1.80845781402858,1.7009124787832,1.92170580427275,2.24884138943349,1.81092359517311,1.5089759505299,1.89106080167819,0.703804496655795,1.7535658594206,2.78047249225598,1.39300866608867,1.02891068203972,1.79130840136644,0,0,0,3.52113813310353,2.11073453982987,1.44049649168812,2.13070262026689,0.983821158737019,1.85120535464854,1.62773761325285,0.804820204198858,0.817357396570186,0.987359099480883,0.164167464079095,0.648550476366846,0.584799949701329,0.878200461164203,0.671032093801859,6.72927835405207,10.3933658503077,0,2.11560453330835,1.49301775374664,1.85789337488351,1.54640953586512,1.81515172161008,0.667134131534611,1.33157938278791,0,0.658795818896044,0.502670417600539,1.39269530428806,1.16978452271472,0,1.08069024937347,0.995706366271836,2.84501851429623,2.39921876480431,5.63538678365402,4.07302655690629,2.71533482034676,3.64706263429657,5.05892296994058,9.15182917473533,9.57692239832386,10.488758933353,16.3048944897932,1.33476084572875,3.73462090715086,2.24862112384854,5.27436315610108,4.3411888755435,4.32863948028414,5.17853047411459,2.91843408195064,4.3929826110093,10.0637744569148,5.95425516269605,7.48890415474945,16.6702059445094,14.8899853223187,12.0610880340842,1.84753190166605,0.757965647081939,1.95557971730431,0.848725428875941,0.704070744865506,1.00503754465089,0,1.75620283072019,4.25614889086716,3.10050565508285,2.55127629851979,1.47476983244164,1.89953480052485,1.3018415272336,0,0,6.88469982226651,0.827810238914197,5.45872005958493,6.91548950893999,6.22952792431367,1.00988370881749,3.78609863299508,5.0757036758563,7.10897212518236,2.15071918157297,3.11918143715352,3.67999490025482,3.64329631507405,3.50707029493574,3.55759000151871,6.42642632843614,0.851640511249612,1.78065603667255,1.30309567482861,0.494910368917606,0,0.728341908464944,0.302323556964751,0.754420319023592,1.47650946440386,0.922305443831782,1.03371317267288,0,1.06949213515416,0,0,0,1.02131881726136,1.08036656418786,2.71653235943784,1.28602221018955,0.886701168211368,2.85390108163313,3.29098041204242,2.13125464380219,0.469343416127421,0.21183207086382,0,0.8244312647074,4.19807509409354,1.74907482291652,1.55184047204077,0.820704498725306,0.291480836629851,12.2380699326936,0,1.03193433981611,0.740778109478847,0.376736914009382,0.136694227721025,0,0,0,0,0,1.10717597753397,1.21991680276109,0.972048067396211,1.04544148007234,0.87345025498471,1.48350781023303,1.73572257023205,0.785267825952089,1.03691978633434,0.621339313086926,0,1.34564891439581,0.66183396182839,2.13896307178452,1.29159823477731,1.85851738039856,1.05621514781179,3.3853140059427,3.14578033277133,1.20792060413003,0.864090018773596,0,0.608175645870493,0.924398614483445,0.129920822977795,0,0.198681354781265,0.240390899039938,0.147689527174577,0.100966449948148,0.0762068066549998,0.100826185136841,0,0,0.116876902181569,0.453460767230423,5.99362074109975,10.5862350799181,5.70807695637867,0.19318959403219,0.750729901804728,0.549454872801795,0.214368379079066,0,6.7770221114048,7.82552902062201,8.02053718815155,8.76451229952807,7.53590771747707,7.55393897389701,6.75022500231806,5.85417564191487,8.60970577069989,6.21312374102184,1.3492355185943,2.39414924040619,4.09760653809922,2.43106717068294,4.40187641518763,3.67687016900028,2.889207461421,3.09052585858341,5.77654577265267,5.30664144703975,5.0695859978048,2.82939512079114,2.62196220915671,3.77748399188729,3.96304735793732,3.81034953026459,3.59241410429052,2.89363830695558,1.64834360321323,3.53277408322554,3.42869252385415,4.61437096014278,2.62279808942053,3.19762116591123,4.51725025993587,2.70766745253365,4.39027134894654,4.47218509444333,3.93831930152999,0.561142271657738,3.79632057997357,2.9551344712669,3.27384834535751,3.56354734727722,2.89359916471712,3.99696924700713,5.6143586026898,2.36358159453128,2.10417165275728,1.10295709559758,2.08681052058379
|short_description=p2@Ddah1
}}
}}

Latest revision as of 18:29, 1 October 2015

Short description:p2@Ddah1
Species:Mouse (Mus musculus)
DPI dataset: NA
TSS-like-by-RIKEN-classifier(Yes/No): NA
DHS support(Yes/No): NA
Description: CAGE_peak_2_at_Ddah1_5end
Coexpression cluster:MCL_coexpression_mm9:3398
Association with transcript: 58bp_to_NM_026993, uc008rqr.2_5end
EntrezGene:Ddah1
Link to Zenbu:ZENBU


View on UCSC genome browser

Mouse over to see Genome browser image, Click image to go to Genome browser


CAGE Expression



0
10
20
30
40
50
60
70




  • Click each plot point to find sample in table


Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data

Retrieved from "http://f5-webapp4.gsc.riken.jp/resource_browser/index.php?title=FFCP_PHASE1:Mm9::chr3:145421714..145421728,%2B&oldid=4316295"