FF:10080-102A8: Difference between revisions
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{{f5samples | {{f5samples | ||
|DRA_sample_Accession=CAGE@ | |DRA_sample_Accession=CAGE@SAMD00005429 | ||
|accession_numbers=CAGE;DRX008628;DRR009500;DRZ000925;DRZ002310 | |accession_numbers=CAGE;DRX008628;DRR009500;DRZ000925;DRZ002310;DRZ012275;DRZ013660 | ||
|ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000310,UBERON:0002100,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915 | |ancestors_in_anatomy_facet=UBERON:0000468,UBERON:0007023,UBERON:0000310,UBERON:0002100,UBERON:0000479,UBERON:0000475,UBERON:0000061,UBERON:0000465,UBERON:0001062,UBERON:0009569,UBERON:0001443,UBERON:0000915 | ||
|ancestors_in_cell_lineage_facet= | |ancestors_in_cell_lineage_facet= | ||
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|created_by= | |created_by= | ||
|creation_date= | |creation_date= | ||
|datafreeze_phase= | |data_phase=2 | ||
|datafreeze_phase=2 | |||
|def= | |def= | ||
|expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!1.96!117.45!SOX18;;chr8:55370487..55370503,+!p1@SOX17!1.86!71.05!SOX17;;chr6:34524093..34524135,-!p1@SPDEF!1.82!65.25!SPDEF;;chr1:201979743..201979762,+!p1@ELF3!1.79!60.17!ELF3;;chr19:33793430..33793447,-!p1@CEBPA!1.75!220.40!CEBPA;;chr21:39870339..39870443,-!p1@ERG!1.74!53.65!ERG;;chr11:113930425..113930471,+!p1@ZBTB16!1.73!73.95!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.72!59.45!PPARG;;chr11:34642612..34642646,+!p1@EHF!1.72!51.47!EHF;;chr2:19558373..19558392,-!p1@OSR1!1.70!129.77!OSR1;;chr1:201979703..201979721,+!p2@ELF3!1.70!48.57!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.70!48.57!ZBED1;;chr19:46801639..46801699,+!p1@HIF3A!1.69!47.85!HIF3A;;chr3:12329397..12329433,+!p2@PPARG!1.62!90.62!PPARG;;chr16:79634595..79634620,-!p2@MAF!1.61!71.05!MAF;;chr15:96873984..96873999,+!p3@NR2F2!1.60!272.60!NR2F2;;chr5:2751762..2751784,-!p1@IRX2!1.52!31.90!IRX2;;chr3:12329358..12329393,+!p3@PPARG!1.49!72.50!PPARG;;chr11:47400078..47400106,-!p1@SPI1!1.49!29.72!SPI1;;chr10:131762504..131762555,-!p1@EBF3!1.47!28.27!EBF3;;chr7:44143925..44143970,+!p1@AEBP1!1.46!598.85!AEBP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.45!697.45!TSC22D3;;chr3:187463179..187463201,-!p2@BCL6!1.45!109.47!BCL6;;chr7:19157248..19157268,-!p1@TWIST1!1.44!72.50!TWIST1;;chr6:152128810..152128827,+!p2@ESR1!1.44!26.82!ESR1;;chr14:38064429..38064486,-!p1@FOXA1!1.43!26.10!FOXA1;;chr7:73038839..73038862,-!p1@MLXIPL!1.42!25.37!MLXIPL;;chr2:177001290..177001315,+!p1@HOXD3!1.41!24.65!HOXD3;;chr8:106330656..106330684,+!p1@ZFPM2!1.39!60.90!ZFPM2;;chr5:3595934..3595957,+!p2@IRX1!1.38!23.20!IRX1;;chr16:85932760..85932775,+!p1@IRF8!1.38!23.20!IRF8;;chr22:38380543..38380569,-!p1@SOX10!1.37!22.47!SOX10;;chr17:1959369..1959388,+!p2@HIC1!1.36!56.55!HIC1;;chr7:15726243..15726293,-!p2@MEOX2!1.36!21.75!MEOX2;;chr3:126076242..126076257,-!p1@KLF15!1.34!26.10!KLF15;;chr16:79634624..79634642,-!p1@MAF!1.32!76.12!MAF;;chr20:55204351..55204377,+!p1@TFAP2C!1.32!25.37!TFAP2C;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.80!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.75!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.57!MEOX2;;chr13:72441315..72441454,-!p1@DACH1!1.30!37.70!DACH1;;chr11:113930291..113930339,+!p2@ZBTB16!1.30!30.45!ZBTB16;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.85!HOXC5;;chr17:38256822..38256851,-!p1@NR1D1!1.28!137.75!NR1D1;;chr6:10412600..10412637,-!p1@TFAP2A!1.28!29.72!TFAP2A;;chr5:3595961..3595975,+!p3@IRX1!1.28!18.12!IRX1;;chr8:25902876..25902936,-!p1@EBF2!1.28!18.12!EBF2;;chr10:8096631..8096660,+!p1@GATA3!1.27!21.02!GATA3;;chr7:44143978..44143989,+!p2@AEBP1!1.26!31.17!AEBP1;;chr7:44143997..44144008,+!p3@AEBP1!1.26!21.75!AEBP1;;chr11:113930401..113930422,+!p3@ZBTB16!1.26!17.40!ZBTB16;;chr12:52437488..52437507,+!p2@NR4A1!1.26!17.40!NR4A1;;chr1:40105299..40105326,-!p1@HEYL!1.26!17.40!HEYL;;chr16:54320646..54320672,-!p2@IRX3!1.25!25.37!IRX3;;chr8:72756637..72756664,-!p3@MSC!1.25!18.85!MSC;;chr5:158527104..158527135,-!p4@EBF1!1.25!16.67!EBF1;;chr3:12392932..12392962,+!p8@PPARG!1.25!16.67!PPARG;;chr2:46524537..46524553,+!p1@EPAS1!1.23!1551.50!EPAS1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.87!EBF1;;chr5:2751785..2751808,-!p2@IRX2!1.23!15.95!IRX2;;chr5:71803177..71803255,-!p1@ZNF366!1.23!15.95!ZNF366;;chr3:69788576..69788648,+!p1@MITF!1.22!82.65!MITF;;chr1:214161272..214161322,+!p1@PROX1!1.22!21.75!PROX1;;chr8:72756667..72756736,-!p2@MSC!1.21!23.92!MSC;;chr8:102504651..102504683,+!p1@GRHL2!1.21!15.22!GRHL2;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.22!SOX7;;chr9:124991204..124991246,-!p1@LHX6!1.21!15.22!LHX6;;chr16:54320617..54320643,-!p3@IRX3!1.20!18.85!IRX3;;chr18:53068911..53068935,-!p4@TCF4!1.20!16.67!TCF4;;chr1:61548225..61548299,+!p1@NFIA!1.19!187.77!NFIA;;chr15:96874012..96874042,+!p2@NR2F2!1.19!128.32!NR2F2;;chr10:8096772..8096787,+!p2@GATA3!1.18!16.67!GATA3;;chr2:176981499..176981522,+!p2@HOXD10!1.17!13.77!HOXD10;;chr16:54320675..54320715,-!p1@IRX3!1.16!29.00!IRX3;;chr13:41240717..41240735,-!p2@FOXO1!1.15!89.17!FOXO1;;chr9:94186085..94186096,-!p3@NFIL3!1.15!21.75!NFIL3;;chr3:126076264..126076305,-!p2@KLF15!1.15!18.12!KLF15;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.05!HOXA3;;chr16:79634464..79634493,-!p5@MAF!1.15!13.05!MAF;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.85!NFATC2;;chr8:48650715..48650735,-!p1@CEBPD!1.13!1574.70!CEBPD;;chr20:39317868..39317884,-!p1@MAFB!1.12!144.27!MAFB;;chr2:145275162..145275202,-!p2@ZEB2!1.12!71.77!ZEB2;;chr10:8095593..8095625,+!p3@GATA3!1.12!14.50!GATA3;;chr3:24536253..24536328,-!p1@THRB!1.11!22.47!THRB;;chrX:107019163..107019179,-!p7@TSC22D3!1.11!13.77!TSC22D3;;chr17:38256799..38256815,-!p3@NR1D1!1.10!21.02!NR1D1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.10!11.60!PEG3;;chr7:115670804..115670825,-!p1@TFEC!1.10!11.60!TFEC;;chr9:94186101..94186122,-!p1@NFIL3!1.09!157.32!NFIL3;;chr13:41240737..41240787,-!p1@FOXO1!1.08!132.67!FOXO1;;chr9:137218341..137218361,+!p2@RXRA!1.08!45.67!RXRA;;chr22:29196433..29196445,-!p4@XBP1!1.08!12.32!XBP1;;chr17:46675420..46675465,-!p3@HOXB6!1.07!12.32!HOXB6;;chr17:6926362..6926377,+!p1@BCL6B!1.07!10.87!BCL6B;;chr2:68592406..68592424,+!p1@PLEK!1.07!10.87!PLEK;;chr10:45495946..45495976,+!p2@ZNF22!1.07!10.87!ZNF22;;chr1:61548069..61548102,+!p3@NFIA!1.06!25.37!NFIA;;chr20:51588873..51588953,+!p1@TSHZ2!1.06!13.77!TSHZ2;;chr22:29196547..29196563,-!p2@XBP1!1.05!377.00!XBP1;;chr10:63809013..63809041,+!p3@ARID5B!1.05!58.00!ARID5B;;chr8:116681409..116681431,-!p2@TRPS1!1.05!28.27!TRPS1;;chr12:10875658..10875708,-!p2@CSDA!1.05!23.92!CSDA;;chr7:64126535..64126559,+!p2@ZNF107!1.05!21.75!ZNF107;;chr6:50786591..50786614,+!p1@TFAP2B!1.05!10.15!TFAP2B;;chr11:47400062..47400077,-!p2@SPI1!1.05!10.15!SPI1;;chr20:30433396..30433414,-!p1@FOXS1!1.05!10.15!FOXS1;;chr7:19157043..19157088,-!p2@TWIST1!1.04!25.37!TWIST1;;chr12:115122005..115122016,-!p3@TBX3!1.03!11.60!TBX3;;chr11:47279504..47279563,+!p1@NR1H3!1.02!21.75!NR1H3;;chr2:145277882..145277967,-!p3@ZEB2!1.02!16.67!ZEB2;;chr2:85980919..85980942,+!p4@ATOH8!1.02!10.15!ATOH8;;chr4:174451370..174451387,-!p1@HAND2!1.02!9.42!HAND2;;chr8:93115274..93115323,-!p4@RUNX1T1!1.02!9.42!RUNX1T1;;chr13:72441074..72441172,-!p2@DACH1!1.02!9.42!DACH1;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.60!ZFPM2;;chr7:113726357..113726443,+!p1@FOXP2!0.99!15.22!FOXP2;;chr17:53342311..53342400,+!p1@HLF!0.99!10.15!HLF;;chr6:108977520..108977534,+!p7@FOXO3!0.99!8.70!FOXO3;;chr9:14314131..14314147,-!p2@NFIB!0.98!48.57!NFIB;;chr9:94186131..94186174,-!p2@NFIL3!0.97!70.32!NFIL3;;chr22:38597987..38598021,+!p2@MAFF!0.97!52.20!MAFF;;chr17:46621937..46621966,-!p2@HOXB2!0.96!22.47!HOXB2;;chr2:145282041..145282092,-!p8@ZEB2!0.96!12.32!ZEB2;;chr7:150946015..150946070,-!p3@SMARCD3!0.95!17.40!SMARCD3;;chr16:54320158..54320200,-!p5@IRX3!0.95!11.60!IRX3;;chrX:66763856..66763896,+!p1@AR!0.95!11.60!AR;;chr16:79634581..79634592,-!p4@MAF!0.95!7.97!MAF;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.95!7.97!ZNF676;;chr1:151804244..151804310,-!p1@RORC!0.95!7.97!RORC;;chr7:27205136..27205164,-!p1@HOXA9!0.95!7.97!HOXA9;;chr3:12392991..12393030,+!p7@PPARG!0.95!7.97!PPARG;;chr12:54394309..54394336,+!p2@HOXC9!0.95!7.97!HOXC9;;chr5:88178983..88179012,-!p1@MEF2C!0.94!62.35!MEF2C;;chr16:79633894..79633954,-!p3@MAF!0.94!15.22!MAF;;chr2:43453734..43453751,-!p1@ZFP36L2!0.93!826.50!ZFP36L2;;chr14:89883509..89883587,-!p2@FOXN3!0.93!52.92!FOXN3;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.77!TBX18;;chr5:88179195..88179224,-!p3@MEF2C!0.93!12.32!MEF2C;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.70!PRRX1;;chr6:152126830..152126847,+!p4@ESR1!0.92!7.25!ESR1;;chr7:27170359..27170381,-!p1@HOXA4!0.92!7.25!HOXA4;;chr7:63505799..63505904,+!p1@ZNF727!0.92!7.25!ZNF727;;chrX:107018836..107018862,-!p8@TSC22D3!0.92!7.25!TSC22D3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.92!7.25!TFCP2L1;;chr3:114343039..114343085,-!p8@ZBTB20!0.92!7.25!ZBTB20;;chr11:100999775..100999800,-!p2@PGR!0.92!7.25!PGR;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.25!HOXC5;;chr10:114709999..114710031,+!p1@TCF7L2!0.91!177.62!TCF7L2;;chr9:137218362..137218385,+!p4@RXRA!0.91!19.57!RXRA;;chrX:56258844..56258882,+!p1@KLF8!0.91!10.15!KLF8;;chr14:21566731..21566836,-!p1@ZNF219!0.90!78.30!ZNF219;;chr12:115121962..115121987,-!p1@TBX3!0.90!60.90!TBX3;;chr3:128206762..128206781,-!p2@GATA2!0.90!45.67!GATA2;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.20!TWIST2;;chr8:99956662..99956684,+!p1@OSR2!0.90!10.87!OSR2;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.15!IRX3;;chr14:35873101..35873119,-!p6@NFKBIA!0.90!9.42!NFKBIA;;chr15:96873921..96873946,+!p1@NR2F2!0.89!200.10!NR2F2;;chr9:73028814..73028895,-!p1@KLF9!0.89!71.05!KLF9;;chr1:61548374..61548415,+!p4@NFIA!0.89!13.05!NFIA;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.42!HOXB7;;chr12:24715376..24715432,-!p1@SOX5!0.89!8.70!SOX5;;chr10:31607702..31607755,+!p3@ZEB1!0.89!7.97!ZEB1;;chr11:128457446..128457461,-!p4@ETS1!0.88!6.52!ETS1;;chr11:129245526..129245553,+!p1@BARX2!0.88!6.52!BARX2;;chr6:152128782..152128803,+!p5@ESR1!0.88!6.52!ESR1;;chr6:391743..391759,+!p1@IRF4!0.88!6.52!IRF4;;chr7:15725757..15725828,-!p5@MEOX2!0.88!6.52!MEOX2;;chr22:19748231..19748317,+!p1@TBX1!0.88!6.52!TBX1;;chr2:176987441..176987454,+!p1@HOXD9!0.88!6.52!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!0.88!6.52!HOXD8;;chr4:174450089..174450153,-!p2@HAND2!0.88!6.52!HAND2;;chr4:26165074..26165110,+!p9@RBPJ!0.88!6.52!RBPJ;;chr16:55358109..55358122,+!p1@IRX6!0.88!6.52!IRX6;;chr18:53089538..53089578,-!p14@TCF4!0.88!6.52!TCF4;;chr19:16435705..16435726,+!p3@KLF2!0.88!6.52!KLF2;;chr19:54041669..54041697,+!p2@ZNF331!0.88!6.52!ZNF331;;chr1:2461692..2461710,-!p1@HES5!0.88!6.52!HES5;;chr21:36260980..36261011,-!p1@RUNX1!0.87!193.57!RUNX1;;chr16:54964740..54964789,+!p1@IRX5!0.87!9.42!IRX5;;chr19:16435625..16435682,+!p1@KLF2!0.86!214.60!KLF2;;chr9:137218281..137218340,+!p1@RXRA!0.86!189.22!RXRA;;chr6:108882109..108882173,+!p2@FOXO3!0.86!35.52!FOXO3;;chr17:38256877..38256900,-!p2@NR1D1!0.86!21.02!NR1D1;;chr12:52430894..52430952,+!p3@NR4A1!0.86!12.32!NR4A1;;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| |expression_enrichment_score=chr20:62680984..62680999,-!p1@SOX18!1.96!117.45!SOX18;;chr8:55370487..55370503,+!p1@SOX17!1.86!71.05!SOX17;;chr6:34524093..34524135,-!p1@SPDEF!1.82!65.25!SPDEF;;chr1:201979743..201979762,+!p1@ELF3!1.79!60.17!ELF3;;chr19:33793430..33793447,-!p1@CEBPA!1.75!220.40!CEBPA;;chr21:39870339..39870443,-!p1@ERG!1.74!53.65!ERG;;chr11:113930425..113930471,+!p1@ZBTB16!1.73!73.95!ZBTB16;;chr3:12330560..12330579,+!p1@PPARG!1.72!59.45!PPARG;;chr11:34642612..34642646,+!p1@EHF!1.72!51.47!EHF;;chr2:19558373..19558392,-!p1@OSR1!1.70!129.77!OSR1;;chr1:201979703..201979721,+!p2@ELF3!1.70!48.57!ELF3;;chrX:2418949..2419024,-!p1@DHRSX,p1@ZBED1!1.70!48.57!ZBED1;;chr19:46801639..46801699,+!p1@HIF3A!1.69!47.85!HIF3A;;chr3:12329397..12329433,+!p2@PPARG!1.62!90.62!PPARG;;chr16:79634595..79634620,-!p2@MAF!1.61!71.05!MAF;;chr15:96873984..96873999,+!p3@NR2F2!1.60!272.60!NR2F2;;chr5:2751762..2751784,-!p1@IRX2!1.52!31.90!IRX2;;chr3:12329358..12329393,+!p3@PPARG!1.49!72.50!PPARG;;chr11:47400078..47400106,-!p1@SPI1!1.49!29.72!SPI1;;chr10:131762504..131762555,-!p1@EBF3!1.47!28.27!EBF3;;chr7:44143925..44143970,+!p1@AEBP1!1.46!598.85!AEBP1;;chrX:106960285..106960299,-!p1@TSC22D3!1.45!697.45!TSC22D3;;chr3:187463179..187463201,-!p2@BCL6!1.45!109.47!BCL6;;chr7:19157248..19157268,-!p1@TWIST1!1.44!72.50!TWIST1;;chr6:152128810..152128827,+!p2@ESR1!1.44!26.82!ESR1;;chr14:38064429..38064486,-!p1@FOXA1!1.43!26.10!FOXA1;;chr7:73038839..73038862,-!p1@MLXIPL!1.42!25.37!MLXIPL;;chr2:177001290..177001315,+!p1@HOXD3!1.41!24.65!HOXD3;;chr8:106330656..106330684,+!p1@ZFPM2!1.39!60.90!ZFPM2;;chr5:3595934..3595957,+!p2@IRX1!1.38!23.20!IRX1;;chr16:85932760..85932775,+!p1@IRF8!1.38!23.20!IRF8;;chr22:38380543..38380569,-!p1@SOX10!1.37!22.47!SOX10;;chr17:1959369..1959388,+!p2@HIC1!1.36!56.55!HIC1;;chr7:15726243..15726293,-!p2@MEOX2!1.36!21.75!MEOX2;;chr3:126076242..126076257,-!p1@KLF15!1.34!26.10!KLF15;;chr16:79634624..79634642,-!p1@MAF!1.32!76.12!MAF;;chr20:55204351..55204377,+!p1@TFAP2C!1.32!25.37!TFAP2C;;chr15:42749722..42749739,-!p2@ZFP106!1.31!34.80!ZFP106;;chr1:170632285..170632309,+!p1@PRRX1!1.31!21.75!PRRX1;;chr7:15726296..15726315,-!p1@MEOX2!1.31!19.57!MEOX2;;chr13:72441315..72441454,-!p1@DACH1!1.30!37.70!DACH1;;chr11:113930291..113930339,+!p2@ZBTB16!1.30!30.45!ZBTB16;;chr12:54410664..54410684,+!p1@HOXC4,p1@HOXC5,p1@HOXC6!1.30!18.85!HOXC5;;chr17:38256822..38256851,-!p1@NR1D1!1.28!137.75!NR1D1;;chr6:10412600..10412637,-!p1@TFAP2A!1.28!29.72!TFAP2A;;chr5:3595961..3595975,+!p3@IRX1!1.28!18.12!IRX1;;chr8:25902876..25902936,-!p1@EBF2!1.28!18.12!EBF2;;chr10:8096631..8096660,+!p1@GATA3!1.27!21.02!GATA3;;chr7:44143978..44143989,+!p2@AEBP1!1.26!31.17!AEBP1;;chr7:44143997..44144008,+!p3@AEBP1!1.26!21.75!AEBP1;;chr11:113930401..113930422,+!p3@ZBTB16!1.26!17.40!ZBTB16;;chr12:52437488..52437507,+!p2@NR4A1!1.26!17.40!NR4A1;;chr1:40105299..40105326,-!p1@HEYL!1.26!17.40!HEYL;;chr16:54320646..54320672,-!p2@IRX3!1.25!25.37!IRX3;;chr8:72756637..72756664,-!p3@MSC!1.25!18.85!MSC;;chr5:158527104..158527135,-!p4@EBF1!1.25!16.67!EBF1;;chr3:12392932..12392962,+!p8@PPARG!1.25!16.67!PPARG;;chr2:46524537..46524553,+!p1@EPAS1!1.23!1551.50!EPAS1;;chr5:158526917..158526932,-!p1@EBF1!1.23!39.87!EBF1;;chr5:2751785..2751808,-!p2@IRX2!1.23!15.95!IRX2;;chr5:71803177..71803255,-!p1@ZNF366!1.23!15.95!ZNF366;;chr3:69788576..69788648,+!p1@MITF!1.22!82.65!MITF;;chr1:214161272..214161322,+!p1@PROX1!1.22!21.75!PROX1;;chr8:72756667..72756736,-!p2@MSC!1.21!23.92!MSC;;chr8:102504651..102504683,+!p1@GRHL2!1.21!15.22!GRHL2;;chr8:10588010..10588030,-!p1@SOX7!1.21!15.22!SOX7;;chr9:124991204..124991246,-!p1@LHX6!1.21!15.22!LHX6;;chr16:54320617..54320643,-!p3@IRX3!1.20!18.85!IRX3;;chr18:53068911..53068935,-!p4@TCF4!1.20!16.67!TCF4;;chr1:61548225..61548299,+!p1@NFIA!1.19!187.77!NFIA;;chr15:96874012..96874042,+!p2@NR2F2!1.19!128.32!NR2F2;;chr10:8096772..8096787,+!p2@GATA3!1.18!16.67!GATA3;;chr2:176981499..176981522,+!p2@HOXD10!1.17!13.77!HOXD10;;chr16:54320675..54320715,-!p1@IRX3!1.16!29.00!IRX3;;chr13:41240717..41240735,-!p2@FOXO1!1.15!89.17!FOXO1;;chr9:94186085..94186096,-!p3@NFIL3!1.15!21.75!NFIL3;;chr3:126076264..126076305,-!p2@KLF15!1.15!18.12!KLF15;;chr7:27192185..27192209,-!p1@HOXA3!1.15!13.05!HOXA3;;chr16:79634464..79634493,-!p5@MAF!1.15!13.05!MAF;;chr20:50159198..50159299,-!p1@NFATC2!1.14!18.85!NFATC2;;chr8:48650715..48650735,-!p1@CEBPD!1.13!1574.70!CEBPD;;chr20:39317868..39317884,-!p1@MAFB!1.12!144.27!MAFB;;chr2:145275162..145275202,-!p2@ZEB2!1.12!71.77!ZEB2;;chr10:8095593..8095625,+!p3@GATA3!1.12!14.50!GATA3;;chr3:24536253..24536328,-!p1@THRB!1.11!22.47!THRB;;chrX:107019163..107019179,-!p7@TSC22D3!1.11!13.77!TSC22D3;;chr17:38256799..38256815,-!p3@NR1D1!1.10!21.02!NR1D1;;chr19:57352087..57352102,-!p1@PEG3,p1@ZIM2!1.10!11.60!PEG3;;chr7:115670804..115670825,-!p1@TFEC!1.10!11.60!TFEC;;chr9:94186101..94186122,-!p1@NFIL3!1.09!157.32!NFIL3;;chr13:41240737..41240787,-!p1@FOXO1!1.08!132.67!FOXO1;;chr9:137218341..137218361,+!p2@RXRA!1.08!45.67!RXRA;;chr22:29196433..29196445,-!p4@XBP1!1.08!12.32!XBP1;;chr17:46675420..46675465,-!p3@HOXB6!1.07!12.32!HOXB6;;chr17:6926362..6926377,+!p1@BCL6B!1.07!10.87!BCL6B;;chr2:68592406..68592424,+!p1@PLEK!1.07!10.87!PLEK;;chr10:45495946..45495976,+!p2@ZNF22!1.07!10.87!ZNF22;;chr1:61548069..61548102,+!p3@NFIA!1.06!25.37!NFIA;;chr20:51588873..51588953,+!p1@TSHZ2!1.06!13.77!TSHZ2;;chr22:29196547..29196563,-!p2@XBP1!1.05!377.00!XBP1;;chr10:63809013..63809041,+!p3@ARID5B!1.05!58.00!ARID5B;;chr8:116681409..116681431,-!p2@TRPS1!1.05!28.27!TRPS1;;chr12:10875658..10875708,-!p2@CSDA!1.05!23.92!CSDA;;chr7:64126535..64126559,+!p2@ZNF107!1.05!21.75!ZNF107;;chr6:50786591..50786614,+!p1@TFAP2B!1.05!10.15!TFAP2B;;chr11:47400062..47400077,-!p2@SPI1!1.05!10.15!SPI1;;chr20:30433396..30433414,-!p1@FOXS1!1.05!10.15!FOXS1;;chr7:19157043..19157088,-!p2@TWIST1!1.04!25.37!TWIST1;;chr12:115122005..115122016,-!p3@TBX3!1.03!11.60!TBX3;;chr11:47279504..47279563,+!p1@NR1H3!1.02!21.75!NR1H3;;chr2:145277882..145277967,-!p3@ZEB2!1.02!16.67!ZEB2;;chr2:85980919..85980942,+!p4@ATOH8!1.02!10.15!ATOH8;;chr4:174451370..174451387,-!p1@HAND2!1.02!9.42!HAND2;;chr8:93115274..93115323,-!p4@RUNX1T1!1.02!9.42!RUNX1T1;;chr13:72441074..72441172,-!p2@DACH1!1.02!9.42!DACH1;;chr8:106330696..106330719,+!p2@ZFPM2!1.00!11.60!ZFPM2;;chr7:113726357..113726443,+!p1@FOXP2!0.99!15.22!FOXP2;;chr17:53342311..53342400,+!p1@HLF!0.99!10.15!HLF;;chr6:108977520..108977534,+!p7@FOXO3!0.99!8.70!FOXO3;;chr9:14314131..14314147,-!p2@NFIB!0.98!48.57!NFIB;;chr9:94186131..94186174,-!p2@NFIL3!0.97!70.32!NFIL3;;chr22:38597987..38598021,+!p2@MAFF!0.97!52.20!MAFF;;chr17:46621937..46621966,-!p2@HOXB2!0.96!22.47!HOXB2;;chr2:145282041..145282092,-!p8@ZEB2!0.96!12.32!ZEB2;;chr7:150946015..150946070,-!p3@SMARCD3!0.95!17.40!SMARCD3;;chr16:54320158..54320200,-!p5@IRX3!0.95!11.60!IRX3;;chrX:66763856..66763896,+!p1@AR!0.95!11.60!AR;;chr16:79634581..79634592,-!p4@MAF!0.95!7.97!MAF;;chr19:22398550..22398579,-!p@chr19:22398550..22398579,-!0.95!7.97!ZNF676;;chr1:151804244..151804310,-!p1@RORC!0.95!7.97!RORC;;chr7:27205136..27205164,-!p1@HOXA9!0.95!7.97!HOXA9;;chr3:12392991..12393030,+!p7@PPARG!0.95!7.97!PPARG;;chr12:54394309..54394336,+!p2@HOXC9!0.95!7.97!HOXC9;;chr5:88178983..88179012,-!p1@MEF2C!0.94!62.35!MEF2C;;chr16:79633894..79633954,-!p3@MAF!0.94!15.22!MAF;;chr2:43453734..43453751,-!p1@ZFP36L2!0.93!826.50!ZFP36L2;;chr14:89883509..89883587,-!p2@FOXN3!0.93!52.92!FOXN3;;chr6:85474299..85474324,-!p1@TBX18!0.93!13.77!TBX18;;chr5:88179195..88179224,-!p3@MEF2C!0.93!12.32!MEF2C;;chr1:170633262..170633285,+!p3@PRRX1!0.93!8.70!PRRX1;;chr6:152126830..152126847,+!p4@ESR1!0.92!7.25!ESR1;;chr7:27170359..27170381,-!p1@HOXA4!0.92!7.25!HOXA4;;chr7:63505799..63505904,+!p1@ZNF727!0.92!7.25!ZNF727;;chrX:107018836..107018862,-!p8@TSC22D3!0.92!7.25!TSC22D3;;chr2:122042770..122042785,-!p1@TFCP2L1!0.92!7.25!TFCP2L1;;chr3:114343039..114343085,-!p8@ZBTB20!0.92!7.25!ZBTB20;;chr11:100999775..100999800,-!p2@PGR!0.92!7.25!PGR;;chr12:54410639..54410659,+!p2@HOXC4,p2@HOXC5,p2@HOXC6!0.92!7.25!HOXC5;;chr10:114709999..114710031,+!p1@TCF7L2!0.91!177.62!TCF7L2;;chr9:137218362..137218385,+!p4@RXRA!0.91!19.57!RXRA;;chrX:56258844..56258882,+!p1@KLF8!0.91!10.15!KLF8;;chr14:21566731..21566836,-!p1@ZNF219!0.90!78.30!ZNF219;;chr12:115121962..115121987,-!p1@TBX3!0.90!60.90!TBX3;;chr3:128206762..128206781,-!p2@GATA2!0.90!45.67!GATA2;;chr2:239756671..239756732,+!p1@TWIST2!0.90!23.20!TWIST2;;chr8:99956662..99956684,+!p1@OSR2!0.90!10.87!OSR2;;chr16:54320101..54320125,-!p4@IRX3!0.90!10.15!IRX3;;chr14:35873101..35873119,-!p6@NFKBIA!0.90!9.42!NFKBIA;;chr15:96873921..96873946,+!p1@NR2F2!0.89!200.10!NR2F2;;chr9:73028814..73028895,-!p1@KLF9!0.89!71.05!KLF9;;chr1:61548374..61548415,+!p4@NFIA!0.89!13.05!NFIA;;chr17:46687959..46688007,-!p2@HOXB7!0.89!9.42!HOXB7;;chr12:24715376..24715432,-!p1@SOX5!0.89!8.70!SOX5;;chr10:31607702..31607755,+!p3@ZEB1!0.89!7.97!ZEB1;;chr11:128457446..128457461,-!p4@ETS1!0.88!6.52!ETS1;;chr11:129245526..129245553,+!p1@BARX2!0.88!6.52!BARX2;;chr6:152128782..152128803,+!p5@ESR1!0.88!6.52!ESR1;;chr6:391743..391759,+!p1@IRF4!0.88!6.52!IRF4;;chr7:15725757..15725828,-!p5@MEOX2!0.88!6.52!MEOX2;;chr22:19748231..19748317,+!p1@TBX1!0.88!6.52!TBX1;;chr2:176987441..176987454,+!p1@HOXD9!0.88!6.52!HOXD9;;chr2:176994408..176994492,+!p1@HOXD8!0.88!6.52!HOXD8;;chr4:174450089..174450153,-!p2@HAND2!0.88!6.52!HAND2;;chr4:26165074..26165110,+!p9@RBPJ!0.88!6.52!RBPJ;;chr16:55358109..55358122,+!p1@IRX6!0.88!6.52!IRX6;;chr18:53089538..53089578,-!p14@TCF4!0.88!6.52!TCF4;;chr19:16435705..16435726,+!p3@KLF2!0.88!6.52!KLF2;;chr19:54041669..54041697,+!p2@ZNF331!0.88!6.52!ZNF331;;chr1:2461692..2461710,-!p1@HES5!0.88!6.52!HES5;;chr21:36260980..36261011,-!p1@RUNX1!0.87!193.57!RUNX1;;chr16:54964740..54964789,+!p1@IRX5!0.87!9.42!IRX5;;chr19:16435625..16435682,+!p1@KLF2!0.86!214.60!KLF2;;chr9:137218281..137218340,+!p1@RXRA!0.86!189.22!RXRA;;chr6:108882109..108882173,+!p2@FOXO3!0.86!35.52!FOXO3;;chr17:38256877..38256900,-!p2@NR1D1!0.86!21.02!NR1D1;;chr12:52430894..52430952,+!p3@NR4A1!0.86!12.32!NR4A1;;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| ||
|fantom_cat=http://fantom.gsc.riken.jp/5/suppl/Hon_et_al_2016/vis/#/ontologies/UBERON:0000310 | |||
|fonse_cell_line= | |fonse_cell_line= | ||
|fonse_cell_line_closure= | |fonse_cell_line_closure= | ||
Line 39: | Line 41: | ||
|fonse_treatment_closure= | |fonse_treatment_closure= | ||
|has_quality= | |has_quality= | ||
|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.nobarcode.bam | |||
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.ctss.bed.gz | |||
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.nobarcode.rdna.fa.gz | |||
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg38.nobarcode.bam | |||
|hg38ctss=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg38.nobarcode.ctss.bed.gz | |||
|id=FF:10080-102A8 | |id=FF:10080-102A8 | ||
|is_a=EFO:0002091;;FF:0010080 | |is_a=EFO:0002091;;FF:0010080 | ||
|is_obsolete= | |is_obsolete= | ||
|library_id=CNhs11792 | |library_id=CNhs11792 | ||
| | |library_id_phase_based=2:CNhs11792 | ||
|microRNAs= | |||
|microRNAs_nn= | |||
|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10080 | |||
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10080 | |||
|name=breast, adult, donor1 | |name=breast, adult, donor1 | ||
|namespace=FANTOM5 | |namespace=FANTOM5 | ||
Line 49: | Line 60: | ||
|profile_cagescan=,,, | |profile_cagescan=,,, | ||
|profile_hcage=CNhs11792,LSID820,release009,COMPLETED | |profile_hcage=CNhs11792,LSID820,release009,COMPLETED | ||
|profile_rnaseq= | |profile_rnaseq= | ||
|profile_srnaseq=,,, | |profile_srnaseq=,,, | ||
|refex=http://refex.dbcls.jp/genelist.php?lang | |||
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| ||
Line 88: | Line 100: | ||
|top_motifs=AR:2.65899350688;NFATC1..3:2.48839122977;STAT2,4,6:2.36731586344;TFAP2{A,C}:2.10620513794;FOXO1,3,4:1.99641646558;MTF1:1.97621432515;TFAP2B:1.87330506314;SP1:1.84728293828;PATZ1:1.8222761949;TFCP2:1.80185668918;HIC1:1.77329031347;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.73450223023;EP300:1.66719535657;MAZ:1.59574481425;MED-1{core}:1.51422290772;XCPE1{core}:1.51416460555;TBP:1.50896548078;SRF:1.3107929734;MYFfamily:1.28763384719;ZNF423:1.25986875846;IKZF1:1.24781568097;SOX5:1.22343908363;TLX1..3_NFIC{dimer}:1.22107976265;GFI1B:1.20285351527;MTE{core}:1.17717795072;FOX{I1,J2}:1.14541080616;FOXQ1:1.14051442006;PAX6:1.12864123048;FOXL1:1.1216246215;HMX1:1.12089675565;EGR1..3:1.11559774842;PRDM1:1.07482986668;HBP1_HMGB_SSRP1_UBTF:1.05415667468;GTF2I:1.04284351964;SPZ1:1.04162560676;FOX{D1,D2}:1.01326489859;HSF1,2:0.997404964657;GATA4:0.9551130859;HNF4A_NR2F1,2:0.906910363676;TFAP4:0.866371153355;MZF1:0.865358223644;HOX{A6,A7,B6,B7}:0.756166064494;ATF6:0.745563143664;TEAD1:0.698209227165;ZNF238:0.682528241391;TGIF1:0.677896990294;BREu{core}:0.672800759353;TEF:0.658370590874;GZF1:0.650266453687;IKZF2:0.616022801128;GTF2A1,2:0.61180836395;ESRRA:0.607568455999;MEF2{A,B,C,D}:0.602692481364;TLX2:0.593041537447;TBX4,5:0.582642636545;NR1H4:0.549817619189;NHLH1,2:0.548968222388;SOX{8,9,10}:0.535846804145;ATF2:0.529834884732;ZIC1..3:0.519673110531;PDX1:0.517762113133;STAT1,3:0.505328436491;ETS1,2:0.500770570375;GCM1,2:0.498278973393;ZNF148:0.493658970348;PAX5:0.485059226533;ZFP161:0.484578523538;SREBF1,2:0.474101750225;FOXP3:0.46062112863;PAX1,9:0.432088580846;SMAD1..7,9:0.408923082084;XBP1:0.402637803058;RBPJ:0.395784887462;IRF7:0.389868389696;RREB1:0.378537851054;bHLH_family:0.373302352107;HIF1A:0.371043897065;ATF4:0.316850128838;SNAI1..3:0.300951732408;EBF1:0.290522158472;CDC5L:0.287585090358;MAFB:0.263067055489;RXR{A,B,G}:0.262831220445;BPTF:0.243536022497;NR3C1:0.235892924055;NFIX:0.190174237329;GATA6:0.179526978406;FOX{F1,F2,J1}:0.179167574278;HAND1,2:0.176611916791;SPIB:0.174445099024;RORA:0.153007923428;REST:0.135533053946;ARID5B:0.123387195682;ZEB1:0.115564180756;PPARG:0.110487309079;HNF1A:0.0704422280315;MYBL2:0.0652736531577;NKX2-1,4:0.0395456848024;IRF1,2:0.0113230278034;NR6A1:0.0108447449812;HLF:-0.00111668292607;GLI1..3:-0.00316163965467;LMO2:-0.015248823791;LHX3,4:-0.0202174388485;CEBPA,B_DDIT3:-0.0264224102653;TP53:-0.0337858958954;SOX2:-0.038778715381;KLF4:-0.0429986687378;SPI1:-0.0553320816295;FOSL2:-0.0554472689926;POU2F1..3:-0.0736155879198;NFIL3:-0.075116856567;ELF1,2,4:-0.0832186186565;NFE2L1:-0.107756494368;UFEwm:-0.119055875174;ZNF384:-0.122915467752;TFDP1:-0.126237559414;JUN:-0.137635748768;NKX2-3_NKX2-5:-0.165531005101;ALX4:-0.176392995766;DMAP1_NCOR{1,2}_SMARC:-0.194190936662;RUNX1..3:-0.207545149129;FOXA2:-0.212100419033;AIRE:-0.21860285083;NKX2-2,8:-0.218908312862;ESR1:-0.22406832633;NANOG:-0.231845664712;AHR_ARNT_ARNT2:-0.265023556355;T:-0.282139436846;POU5F1:-0.285692907207;NFKB1_REL_RELA:-0.3041416977;POU6F1:-0.354031722456;NFE2:-0.356869064411;FOXN1:-0.368281006653;MYOD1:-0.373490732848;EVI1:-0.399736887825;FOS_FOS{B,L1}_JUN{B,D}:-0.402476740389;ZNF143:-0.402532697732;CDX1,2,4:-0.408471880911;GFI1:-0.412263473243;RFX2..5_RFXANK_RFXAP:-0.421015270436;NFE2L2:-0.4221409674;PRRX1,2:-0.433522705223;CUX2:-0.485010511397;PAX3,7:-0.487655924183;NFY{A,B,C}:-0.490645682991;POU3F1..4:-0.490663622652;BACH2:-0.502903614672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.510846669999;RXRA_VDR{dimer}:-0.510980560665;FOXM1:-0.542966213203;VSX1,2:-0.556307879412;ZBTB6:-0.569756816861;HOX{A5,B5}:-0.583907384708;SOX17:-0.602557136919;FOXD3:-0.605766673065;HES1:-0.63364075248;STAT5{A,B}:-0.645956302521;NR5A1,2:-0.656571538819;ADNP_IRX_SIX_ZHX:-0.693079629623;HOX{A4,D4}:-0.705822992782;ALX1:-0.707753253574;NRF1:-0.71869974855;PBX1:-0.724047379605;ATF5_CREB3:-0.753439888523;NKX3-2:-0.757888262392;NANOG{mouse}:-0.768144564708;DBP:-0.777775695756;PITX1..3:-0.81746408369;LEF1_TCF7_TCF7L1,2:-0.851033411136;CREB1:-0.851482360106;PAX2:-0.855620662005;FOXP1:-0.862285215284;RFX1:-0.884614374871;CRX:-0.921514272931;OCT4_SOX2{dimer}:-0.951269778779;TOPORS:-0.977484577618;TAL1_TCF{3,4,12}:-0.982693923569;HMGA1,2:-0.996463537228;ZBTB16:-1.00297487266;E2F1..5:-1.0324317438;PAX8:-1.14041481174;NKX6-1,2:-1.2231753783;EN1,2:-1.2597175339;MYB:-1.38898136639;PAX4:-1.4826735465;ONECUT1,2:-1.64766712609;HOXA9_MEIS1:-1.65806086322;YY1:-1.87333990705;NKX3-1:-1.93105481542;POU1F1:-1.9492895749;ELK1,4_GABP{A,B1}:-2.06229588556 | |top_motifs=AR:2.65899350688;NFATC1..3:2.48839122977;STAT2,4,6:2.36731586344;TFAP2{A,C}:2.10620513794;FOXO1,3,4:1.99641646558;MTF1:1.97621432515;TFAP2B:1.87330506314;SP1:1.84728293828;PATZ1:1.8222761949;TFCP2:1.80185668918;HIC1:1.77329031347;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.73450223023;EP300:1.66719535657;MAZ:1.59574481425;MED-1{core}:1.51422290772;XCPE1{core}:1.51416460555;TBP:1.50896548078;SRF:1.3107929734;MYFfamily:1.28763384719;ZNF423:1.25986875846;IKZF1:1.24781568097;SOX5:1.22343908363;TLX1..3_NFIC{dimer}:1.22107976265;GFI1B:1.20285351527;MTE{core}:1.17717795072;FOX{I1,J2}:1.14541080616;FOXQ1:1.14051442006;PAX6:1.12864123048;FOXL1:1.1216246215;HMX1:1.12089675565;EGR1..3:1.11559774842;PRDM1:1.07482986668;HBP1_HMGB_SSRP1_UBTF:1.05415667468;GTF2I:1.04284351964;SPZ1:1.04162560676;FOX{D1,D2}:1.01326489859;HSF1,2:0.997404964657;GATA4:0.9551130859;HNF4A_NR2F1,2:0.906910363676;TFAP4:0.866371153355;MZF1:0.865358223644;HOX{A6,A7,B6,B7}:0.756166064494;ATF6:0.745563143664;TEAD1:0.698209227165;ZNF238:0.682528241391;TGIF1:0.677896990294;BREu{core}:0.672800759353;TEF:0.658370590874;GZF1:0.650266453687;IKZF2:0.616022801128;GTF2A1,2:0.61180836395;ESRRA:0.607568455999;MEF2{A,B,C,D}:0.602692481364;TLX2:0.593041537447;TBX4,5:0.582642636545;NR1H4:0.549817619189;NHLH1,2:0.548968222388;SOX{8,9,10}:0.535846804145;ATF2:0.529834884732;ZIC1..3:0.519673110531;PDX1:0.517762113133;STAT1,3:0.505328436491;ETS1,2:0.500770570375;GCM1,2:0.498278973393;ZNF148:0.493658970348;PAX5:0.485059226533;ZFP161:0.484578523538;SREBF1,2:0.474101750225;FOXP3:0.46062112863;PAX1,9:0.432088580846;SMAD1..7,9:0.408923082084;XBP1:0.402637803058;RBPJ:0.395784887462;IRF7:0.389868389696;RREB1:0.378537851054;bHLH_family:0.373302352107;HIF1A:0.371043897065;ATF4:0.316850128838;SNAI1..3:0.300951732408;EBF1:0.290522158472;CDC5L:0.287585090358;MAFB:0.263067055489;RXR{A,B,G}:0.262831220445;BPTF:0.243536022497;NR3C1:0.235892924055;NFIX:0.190174237329;GATA6:0.179526978406;FOX{F1,F2,J1}:0.179167574278;HAND1,2:0.176611916791;SPIB:0.174445099024;RORA:0.153007923428;REST:0.135533053946;ARID5B:0.123387195682;ZEB1:0.115564180756;PPARG:0.110487309079;HNF1A:0.0704422280315;MYBL2:0.0652736531577;NKX2-1,4:0.0395456848024;IRF1,2:0.0113230278034;NR6A1:0.0108447449812;HLF:-0.00111668292607;GLI1..3:-0.00316163965467;LMO2:-0.015248823791;LHX3,4:-0.0202174388485;CEBPA,B_DDIT3:-0.0264224102653;TP53:-0.0337858958954;SOX2:-0.038778715381;KLF4:-0.0429986687378;SPI1:-0.0553320816295;FOSL2:-0.0554472689926;POU2F1..3:-0.0736155879198;NFIL3:-0.075116856567;ELF1,2,4:-0.0832186186565;NFE2L1:-0.107756494368;UFEwm:-0.119055875174;ZNF384:-0.122915467752;TFDP1:-0.126237559414;JUN:-0.137635748768;NKX2-3_NKX2-5:-0.165531005101;ALX4:-0.176392995766;DMAP1_NCOR{1,2}_SMARC:-0.194190936662;RUNX1..3:-0.207545149129;FOXA2:-0.212100419033;AIRE:-0.21860285083;NKX2-2,8:-0.218908312862;ESR1:-0.22406832633;NANOG:-0.231845664712;AHR_ARNT_ARNT2:-0.265023556355;T:-0.282139436846;POU5F1:-0.285692907207;NFKB1_REL_RELA:-0.3041416977;POU6F1:-0.354031722456;NFE2:-0.356869064411;FOXN1:-0.368281006653;MYOD1:-0.373490732848;EVI1:-0.399736887825;FOS_FOS{B,L1}_JUN{B,D}:-0.402476740389;ZNF143:-0.402532697732;CDX1,2,4:-0.408471880911;GFI1:-0.412263473243;RFX2..5_RFXANK_RFXAP:-0.421015270436;NFE2L2:-0.4221409674;PRRX1,2:-0.433522705223;CUX2:-0.485010511397;PAX3,7:-0.487655924183;NFY{A,B,C}:-0.490645682991;POU3F1..4:-0.490663622652;BACH2:-0.502903614672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.510846669999;RXRA_VDR{dimer}:-0.510980560665;FOXM1:-0.542966213203;VSX1,2:-0.556307879412;ZBTB6:-0.569756816861;HOX{A5,B5}:-0.583907384708;SOX17:-0.602557136919;FOXD3:-0.605766673065;HES1:-0.63364075248;STAT5{A,B}:-0.645956302521;NR5A1,2:-0.656571538819;ADNP_IRX_SIX_ZHX:-0.693079629623;HOX{A4,D4}:-0.705822992782;ALX1:-0.707753253574;NRF1:-0.71869974855;PBX1:-0.724047379605;ATF5_CREB3:-0.753439888523;NKX3-2:-0.757888262392;NANOG{mouse}:-0.768144564708;DBP:-0.777775695756;PITX1..3:-0.81746408369;LEF1_TCF7_TCF7L1,2:-0.851033411136;CREB1:-0.851482360106;PAX2:-0.855620662005;FOXP1:-0.862285215284;RFX1:-0.884614374871;CRX:-0.921514272931;OCT4_SOX2{dimer}:-0.951269778779;TOPORS:-0.977484577618;TAL1_TCF{3,4,12}:-0.982693923569;HMGA1,2:-0.996463537228;ZBTB16:-1.00297487266;E2F1..5:-1.0324317438;PAX8:-1.14041481174;NKX6-1,2:-1.2231753783;EN1,2:-1.2597175339;MYB:-1.38898136639;PAX4:-1.4826735465;ONECUT1,2:-1.64766712609;HOXA9_MEIS1:-1.65806086322;YY1:-1.87333990705;NKX3-1:-1.93105481542;POU1F1:-1.9492895749;ELK1,4_GABP{A,B1}:-2.06229588556 | ||
|xref= | |xref= | ||
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10080-102A8;search_select_hide=table117:FF:10080-102A8 | |||
}} | }} |
Latest revision as of 12:20, 3 June 2020
Name: | breast, adult, donor1 |
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Species: | Human (Homo sapiens) |
Library ID: | CNhs11792 |
Sample type: | tissues |
Genomic View: | UCSC |
RefEX: | Specific genes |
FANTOM CAT: | 1 |
CAGEd-oPOSSUM: | link |
ZENBU report : | link |
Additional information | ||||||||||||||||||||||||||||
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Sample information
RNA information
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CAGE Accession numbers | ||||||||||||||||||||||||||||||||||||||||||||||
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Download raw sequence, BAM & CTSS | ||||||||||||||
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Relative expression to median (log10)
Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.
Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data
Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data
TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample
JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11792
FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data
library id: CNhs11792
Novel motif | Logo | P-value |
---|---|---|
1 | 1 | 0.012 |
10 | 10 | 0.0449 |
100 | 100 | 0.244 |
101 | 101 | 0.373 |
102 | 102 | 0.456 |
103 | 103 | 0.154 |
104 | 104 | 0.615 |
105 | 105 | 0.745 |
106 | 106 | 0.694 |
107 | 107 | 0.319 |
108 | 108 | 0.941 |
109 | 109 | 0.0715 |
11 | 11 | 0.1 |
110 | 110 | 0.0971 |
111 | 111 | 0.0313 |
112 | 112 | 0.751 |
113 | 113 | 0.35 |
114 | 114 | 0.00368 |
115 | 115 | 0.0676 |
116 | 116 | 0.593 |
117 | 117 | 0.0069 |
118 | 118 | 0.076 |
119 | 119 | 0.829 |
12 | 12 | 0.673 |
120 | 120 | 0.189 |
121 | 121 | 0.741 |
122 | 122 | 0.832 |
123 | 123 | 0.0081 |
124 | 124 | 0.24 |
125 | 125 | 0.251 |
126 | 126 | 0.475 |
127 | 127 | 0.924 |
128 | 128 | 0.868 |
129 | 129 | 0.378 |
13 | 13 | 0.0625 |
130 | 130 | 0.812 |
131 | 131 | 0.593 |
132 | 132 | 0.0743 |
133 | 133 | 0.643 |
134 | 134 | 0.882 |
135 | 135 | 0.192 |
136 | 136 | 0.742 |
137 | 137 | 0.715 |
138 | 138 | 0.232 |
139 | 139 | 0.563 |
14 | 14 | 0.649 |
140 | 140 | 0.0571 |
141 | 141 | 0.447 |
142 | 142 | 0.304 |
143 | 143 | 0.00247 |
144 | 144 | 0.815 |
145 | 145 | 0.663 |
146 | 146 | 0.984 |
147 | 147 | 0.333 |
148 | 148 | 0.275 |
149 | 149 | 0.46 |
15 | 15 | 0.0587 |
150 | 150 | 0.565 |
151 | 151 | 0.789 |
152 | 152 | 0.167 |
153 | 153 | 0.733 |
154 | 154 | 0.24 |
155 | 155 | 0.99 |
156 | 156 | 0.737 |
157 | 157 | 0.342 |
158 | 158 | 0.253 |
159 | 159 | 0.734 |
16 | 16 | 0.11 |
160 | 160 | 0.863 |
161 | 161 | 0.354 |
162 | 162 | 0.49 |
163 | 163 | 0.779 |
164 | 164 | 0.0584 |
165 | 165 | 0.66 |
166 | 166 | 0.967 |
167 | 167 | 0.027 |
168 | 168 | 0.734 |
169 | 169 | 0.605 |
17 | 17 | 0.506 |
18 | 18 | 0.0878 |
19 | 19 | 0.774 |
2 | 2 | 0.29 |
20 | 20 | 0.197 |
21 | 21 | 0.445 |
22 | 22 | 0.699 |
23 | 23 | 0.202 |
24 | 24 | 0.391 |
25 | 25 | 0.321 |
26 | 26 | 0.116 |
27 | 27 | 0.659 |
28 | 28 | 0.526 |
29 | 29 | 0.0128 |
3 | 3 | 0.0708 |
30 | 30 | 0.0314 |
31 | 31 | 0.917 |
32 | 32 | 0.307 |
33 | 33 | 0.3 |
34 | 34 | 0.27 |
35 | 35 | 0.0448 |
36 | 36 | 0.041 |
37 | 37 | 0.173 |
38 | 38 | 0.824 |
39 | 39 | 0.29 |
4 | 4 | 0.343 |
40 | 40 | 0.157 |
41 | 41 | 0.452 |
42 | 42 | 0.112 |
43 | 43 | 0.262 |
44 | 44 | 0.549 |
45 | 45 | 0.237 |
46 | 46 | 0.0799 |
47 | 47 | 0.0286 |
48 | 48 | 0.114 |
49 | 49 | 0.0765 |
5 | 5 | 0.807 |
50 | 50 | 0.741 |
51 | 51 | 0.513 |
52 | 52 | 0.194 |
53 | 53 | 0.665 |
54 | 54 | 0.992 |
55 | 55 | 0.633 |
56 | 56 | 0.707 |
57 | 57 | 0.103 |
58 | 58 | 0.514 |
59 | 59 | 0.759 |
6 | 6 | 0.978 |
60 | 60 | 0.595 |
61 | 61 | 0.214 |
62 | 62 | 0.362 |
63 | 63 | 0.601 |
64 | 64 | 0.258 |
65 | 65 | 0.913 |
66 | 66 | 0.0953 |
67 | 67 | 0.691 |
68 | 68 | 0.334 |
69 | 69 | 0.438 |
7 | 7 | 0.405 |
70 | 70 | 0.00571 |
71 | 71 | 0.0182 |
72 | 72 | 0.938 |
73 | 73 | 0.583 |
74 | 74 | 0.781 |
75 | 75 | 0.0259 |
76 | 76 | 0.0358 |
77 | 77 | 0.247 |
78 | 78 | 0.31 |
79 | 79 | 0.884 |
8 | 8 | 0.418 |
80 | 80 | 0.326 |
81 | 81 | 0.337 |
82 | 82 | 0.301 |
83 | 83 | 0.496 |
84 | 84 | 0.67 |
85 | 85 | 0.467 |
86 | 86 | 0.758 |
87 | 87 | 0.374 |
88 | 88 | 0.693 |
89 | 89 | 0.222 |
9 | 9 | 0.306 |
90 | 90 | 0.0334 |
91 | 91 | 0.488 |
92 | 92 | 0.625 |
93 | 93 | 0.0165 |
94 | 94 | 0.077 |
95 | 95 | 0.0865 |
96 | 96 | 0.42 |
97 | 97 | 0.622 |
98 | 98 | 0.048 |
99 | 99 | 0.414 |
de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br>
library id: CNhs11792
FANTOM5 (FF) ontology
Direct parent terms
is_a relathionship
EFO:0002091 biological replicate
FF:0010080 human breast - adult sample
Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data
UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000310 (breast)
0002100 (trunk)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)
FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010080 (human breast - adult sample)
Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
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