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{{f5samples
{{f5samples
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|DRA_sample_Accession=CAGE@SAMD00005429
|accession_numbers=CAGE;DRX008628;DRR009500;DRZ000925;DRZ002310;DRZ012275;DRZ013660
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|def=
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Line 35: Line 41:
|fonse_treatment_closure=
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|hg19bam=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.nobarcode.bam
|hg19ctss=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.ctss.bed.gz
|hg19fasta=http://fantom.gsc.riken.jp/5/datafiles/latest/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg19.nobarcode.rdna.fa.gz
|hg38bam=http://fantom.gsc.riken.jp/5/datafiles/reprocessed/hg38_v2/basic/human.tissue.hCAGE/breast%252c%2520adult%252c%2520donor1.CNhs11792.10080-102A8.hg38.nobarcode.bam
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|id=FF:10080-102A8
|id=FF:10080-102A8
|is_a=EFO:0002091;;FF:0000004;;FF:0000210;;FF:0010080
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|library_id=CNhs11792
|library_id_phase_based=2:CNhs11792
|microRNAs=
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|microRNAs_nonnovel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer/#/human#cage;sample;10080
|microRNAs_novel_cage=http://fantom.gsc.riken.jp/5/suppl/De_Rie_et_al_2017/vis_viewer_novel/#/human#cage;sample;10080
|name=breast, adult, donor1
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|namespace=FANTOM5
Line 42: Line 60:
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|rna_box=102
|rna_box=102
|rna_catalog_number=Cat:AM6952
|rna_catalog_number=Cat:AM6952
Line 57: Line 78:
|rna_weight_ug=50
|rna_weight_ug=50
|sample_age=
|sample_age=
|sample_category=tissues
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|sample_cell_catalog=NA
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|sample_cell_line=
Line 69: Line 91:
|sample_ethnicity=C
|sample_ethnicity=C
|sample_experimental_condition=
|sample_experimental_condition=
|sample_gostat=GO:0044464;cell part;0!GO:0005622;intracellular;0!GO:0044424;intracellular part;4.34398472697843e-250!GO:0005737;cytoplasm;7.9447726772677e-157!GO:0043226;organelle;6.42281866935382e-120!GO:0043229;intracellular organelle;1.3179312745784e-119!GO:0043227;membrane-bound organelle;2.7043789179732e-118!GO:0043231;intracellular membrane-bound organelle;2.76452169694217e-118!GO:0044444;cytoplasmic part;3.1019119655523e-106!GO:0005515;protein binding;2.16625116169372e-90!GO:0044422;organelle part;1.78131512945136e-71!GO:0044446;intracellular organelle part;3.10326097793806e-70!GO:0044238;primary metabolic process;3.34194808272546e-51!GO:0044237;cellular metabolic process;7.51109661240324e-51!GO:0032991;macromolecular complex;1.61500163436213e-49!GO:0043170;macromolecule metabolic process;2.66132159825335e-47!GO:0005739;mitochondrion;5.78564721638335e-43!GO:0030529;ribonucleoprotein complex;9.55909448300216e-43!GO:0031090;organelle membrane;8.15557280667683e-40!GO:0016043;cellular component organization and biogenesis;1.65796135593701e-38!GO:0043233;organelle lumen;6.64368011515973e-37!GO:0031974;membrane-enclosed lumen;6.64368011515973e-37!GO:0019538;protein metabolic process;2.72043162630927e-36!GO:0005634;nucleus;2.26484387674799e-35!GO:0003723;RNA binding;4.49476632546481e-34!GO:0044428;nuclear part;1.07381234457584e-32!GO:0044260;cellular macromolecule metabolic process;4.37294694708918e-32!GO:0044429;mitochondrial part;7.69787978086603e-32!GO:0015031;protein transport;1.0099233245951e-31!GO:0033036;macromolecule localization;1.91965862045362e-31!GO:0031967;organelle envelope;5.21670809517132e-31!GO:0044267;cellular protein metabolic process;6.48829056499329e-31!GO:0031975;envelope;8.3480617153595e-31!GO:0005829;cytosol;1.58872217506622e-30!GO:0045184;establishment of protein localization;4.21806990599868e-30!GO:0008104;protein localization;9.20270014925555e-30!GO:0005840;ribosome;4.10697425339385e-27!GO:0006412;translation;1.02895297219575e-26!GO:0046907;intracellular transport;3.91503716850898e-26!GO:0043234;protein complex;1.72515761639682e-25!GO:0003735;structural constituent of ribosome;4.47533455974705e-24!GO:0006886;intracellular protein transport;2.19929718647553e-23!GO:0009058;biosynthetic process;7.78466768174552e-23!GO:0033279;ribosomal subunit;1.87321611672429e-22!GO:0043283;biopolymer metabolic process;2.20009513893981e-22!GO:0005740;mitochondrial envelope;2.82749471639849e-22!GO:0009059;macromolecule biosynthetic process;7.3692367729329e-22!GO:0065003;macromolecular complex assembly;1.26197780486844e-21!GO:0031966;mitochondrial membrane;1.54905382933132e-21!GO:0016071;mRNA metabolic process;2.59561784478688e-21!GO:0044249;cellular biosynthetic process;6.14521045987191e-20!GO:0010467;gene expression;9.54726058481664e-20!GO:0019866;organelle inner membrane;1.14100586939173e-19!GO:0022607;cellular component assembly;1.35797872645545e-19!GO:0008380;RNA splicing;2.18046306879768e-19!GO:0031981;nuclear lumen;2.93337814055641e-19!GO:0006396;RNA processing;7.11002274597717e-19!GO:0008134;transcription factor binding;3.95138139144196e-18!GO:0005743;mitochondrial inner membrane;3.95138139144196e-18!GO:0005830;cytosolic ribosome (sensu Eukaryota);1.19551085037075e-17!GO:0048770;pigment granule;1.9595082087324e-17!GO:0042470;melanosome;1.9595082087324e-17!GO:0012505;endomembrane system;8.69151763946467e-17!GO:0005783;endoplasmic reticulum;1.05013212123815e-16!GO:0006397;mRNA processing;3.67155057170798e-16!GO:0006119;oxidative phosphorylation;4.72924843197499e-16!GO:0051641;cellular localization;6.22280331878034e-16!GO:0051649;establishment of cellular localization;6.98032381913054e-16!GO:0005794;Golgi apparatus;1.75423124379124e-14!GO:0048523;negative regulation of cellular process;1.77927794830188e-14!GO:0016192;vesicle-mediated transport;1.92267301194312e-14!GO:0006996;organelle organization and biogenesis;1.96540499220271e-14!GO:0044445;cytosolic part;2.11838533504804e-14!GO:0006139;nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;8.40444895062694e-14!GO:0044455;mitochondrial membrane part;1.64910799120504e-13!GO:0048519;negative regulation of biological process;2.87500568054921e-13!GO:0022613;ribonucleoprotein complex biogenesis and assembly;5.11242707656173e-13!GO:0005681;spliceosome;5.71161464465474e-13!GO:0031980;mitochondrial lumen;7.48627130890473e-13!GO:0005759;mitochondrial matrix;7.48627130890473e-13!GO:0000166;nucleotide binding;1.06450983273958e-12!GO:0005746;mitochondrial respiratory chain;1.29701592262729e-12!GO:0005654;nucleoplasm;1.47251435379646e-12!GO:0043228;non-membrane-bound organelle;1.85694542059805e-12!GO:0043232;intracellular non-membrane-bound organelle;1.85694542059805e-12!GO:0006457;protein folding;2.25510562025426e-12!GO:0012501;programmed cell death;3.28049150359154e-12!GO:0015934;large ribosomal subunit;5.07322792013777e-12!GO:0050794;regulation of cellular process;6.58597115412513e-12!GO:0006915;apoptosis;6.89608247489806e-12!GO:0022618;protein-RNA complex assembly;9.57454367601008e-12!GO:0008219;cell death;9.57454367601008e-12!GO:0016265;death;9.57454367601008e-12!GO:0044432;endoplasmic reticulum part;1.10494156109056e-11!GO:0016655;oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor;1.34333334356307e-11!GO:0015935;small ribosomal subunit;2.04406683414958e-11!GO:0050136;NADH dehydrogenase (quinone) activity;2.50230869549879e-11!GO:0003954;NADH dehydrogenase activity;2.50230869549879e-11!GO:0008137;NADH dehydrogenase (ubiquinone) activity;2.50230869549879e-11!GO:0003712;transcription cofactor activity;2.52311225936763e-11!GO:0044451;nucleoplasm part;2.99968794376108e-11!GO:0016874;ligase activity;4.12200340717336e-11!GO:0043412;biopolymer modification;5.36554471562717e-11!GO:0048193;Golgi vesicle transport;6.08110351382903e-11!GO:0006605;protein targeting;6.32757605967617e-11!GO:0006366;transcription from RNA polymerase II promoter;6.64026253742774e-11!GO:0043285;biopolymer catabolic process;1.09835705164707e-10!GO:0051603;proteolysis involved in cellular protein catabolic process;1.28961601979276e-10!GO:0006511;ubiquitin-dependent protein catabolic process;1.64581739892314e-10!GO:0006512;ubiquitin cycle;1.77118443680599e-10!GO:0050789;regulation of biological process;2.09359634566215e-10!GO:0006464;protein modification process;2.31316695482044e-10!GO:0019941;modification-dependent protein catabolic process;2.31316695482044e-10!GO:0043632;modification-dependent macromolecule catabolic process;2.31316695482044e-10!GO:0030036;actin cytoskeleton organization and biogenesis;2.56457582818685e-10!GO:0044265;cellular macromolecule catabolic process;2.78780131191407e-10!GO:0044257;cellular protein catabolic process;3.0611582770931e-10!GO:0016564;transcription repressor activity;5.14904216454507e-10!GO:0005635;nuclear envelope;5.60268185021716e-10!GO:0051186;cofactor metabolic process;5.88940534508928e-10!GO:0008092;cytoskeletal protein binding;6.27157001264951e-10!GO:0043687;post-translational protein modification;7.46313326356625e-10!GO:0008135;translation factor activity, nucleic acid binding;1.04601617630995e-09!GO:0016651;oxidoreductase activity, acting on NADH or NADPH;1.07749574546554e-09!GO:0005768;endosome;1.07749574546554e-09!GO:0030163;protein catabolic process;1.29809394031159e-09!GO:0030964;NADH dehydrogenase complex (quinone);1.59276226267419e-09!GO:0045271;respiratory chain complex I;1.59276226267419e-09!GO:0005747;mitochondrial respiratory chain complex I;1.59276226267419e-09!GO:0006461;protein complex assembly;1.75538084863227e-09!GO:0042775;organelle ATP synthesis coupled electron transport;1.97579186058153e-09!GO:0042773;ATP synthesis coupled electron transport;1.97579186058153e-09!GO:0005842;cytosolic large ribosomal subunit (sensu Eukaryota);2.04509427713118e-09!GO:0006793;phosphorus metabolic process;2.58542566521187e-09!GO:0006796;phosphate metabolic process;2.58542566521187e-09!GO:0051082;unfolded protein binding;2.67598626367856e-09!GO:0006120;mitochondrial electron transport, NADH to ubiquinone;3.14661499358315e-09!GO:0017076;purine nucleotide binding;3.31644223328497e-09!GO:0008565;protein transporter activity;3.47708027108662e-09!GO:0009057;macromolecule catabolic process;4.40351606010534e-09!GO:0016462;pyrophosphatase activity;5.7872865163438e-09!GO:0016818;hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides;5.92832626968128e-09!GO:0006913;nucleocytoplasmic transport;6.59821494803038e-09!GO:0005793;ER-Golgi intermediate compartment;7.78817041121846e-09!GO:0016817;hydrolase activity, acting on acid anhydrides;9.327174647868e-09!GO:0030029;actin filament-based process;9.7598995273472e-09!GO:0032553;ribonucleotide binding;1.2233528238756e-08!GO:0032555;purine ribonucleotide binding;1.2233528238756e-08!GO:0051169;nuclear transport;1.38810281200203e-08!GO:0009055;electron carrier activity;1.38810281200203e-08!GO:0044248;cellular catabolic process;1.45193274164196e-08!GO:0006446;regulation of translational initiation;1.50016168315275e-08!GO:0005773;vacuole;1.65711798882429e-08!GO:0005843;cytosolic small ribosomal subunit (sensu Eukaryota);1.69245377085946e-08!GO:0031965;nuclear membrane;1.73052617055835e-08!GO:0008361;regulation of cell size;1.81493012992995e-08!GO:0017111;nucleoside-triphosphatase activity;2.38094827099709e-08!GO:0016049;cell growth;2.45431326150927e-08!GO:0031988;membrane-bound vesicle;2.91597536656389e-08!GO:0042175;nuclear envelope-endoplasmic reticulum network;2.95764857906019e-08!GO:0005789;endoplasmic reticulum membrane;3.08840789995317e-08!GO:0016070;RNA metabolic process;3.30037304746977e-08!GO:0000502;proteasome complex (sensu Eukaryota);3.99809113052443e-08!GO:0031252;leading edge;3.99809113052443e-08!GO:0006732;coenzyme metabolic process;5.08726059706832e-08!GO:0016023;cytoplasmic membrane-bound vesicle;5.11807295021518e-08!GO:0003743;translation initiation factor activity;5.86307503093357e-08!GO:0031982;vesicle;5.93068575285738e-08!GO:0001558;regulation of cell growth;8.28120791979773e-08!GO:0065007;biological regulation;8.96197695338532e-08!GO:0006413;translational initiation;9.69379630218788e-08!GO:0003714;transcription corepressor activity;9.94935739868899e-08!GO:0031410;cytoplasmic vesicle;1.06651282838735e-07!GO:0005761;mitochondrial ribosome;1.07351318245099e-07!GO:0000313;organellar ribosome;1.07351318245099e-07!GO:0043069;negative regulation of programmed cell death;1.17058372192871e-07!GO:0016044;membrane organization and biogenesis;1.26645341998176e-07!GO:0000323;lytic vacuole;1.32192483179297e-07!GO:0005764;lysosome;1.32192483179297e-07!GO:0031324;negative regulation of cellular metabolic process;1.38793526390007e-07!GO:0043066;negative regulation of apoptosis;1.50851590907251e-07!GO:0003676;nucleic acid binding;1.56499548280623e-07!GO:0046961;hydrogen ion transporting ATPase activity, rotational mechanism;1.78508955522079e-07!GO:0016310;phosphorylation;1.94125862330942e-07!GO:0009892;negative regulation of metabolic process;2.61723609036861e-07!GO:0007264;small GTPase mediated signal transduction;2.79482861274464e-07!GO:0000398;nuclear mRNA splicing, via spliceosome;3.24242540249793e-07!GO:0000375;RNA splicing, via transesterification reactions;3.24242540249793e-07!GO:0000377;RNA splicing, via transesterification reactions with bulged adenosine as nucleophile;3.24242540249793e-07!GO:0005730;nucleolus;3.26202698411643e-07!GO:0006091;generation of precursor metabolites and energy;4.21359839321505e-07!GO:0019899;enzyme binding;4.27724966875233e-07!GO:0051246;regulation of protein metabolic process;5.43372032940237e-07!GO:0009060;aerobic respiration;6.48688710166424e-07!GO:0046933;hydrogen ion transporting ATP synthase activity, rotational mechanism;6.89412358019021e-07!GO:0017038;protein import;7.61814435469555e-07!GO:0008639;small protein conjugating enzyme activity;8.84559868629893e-07!GO:0016604;nuclear body;8.90552795685591e-07!GO:0048522;positive regulation of cellular process;8.96456827111618e-07!GO:0042981;regulation of apoptosis;9.06069737675279e-07!GO:0043122;regulation of I-kappaB kinase/NF-kappaB cascade;1.06444822283409e-06!GO:0043067;regulation of programmed cell death;1.154529644379e-06!GO:0007243;protein kinase cascade;1.19829974346359e-06!GO:0004842;ubiquitin-protein ligase activity;1.36361401079523e-06!GO:0005525;GTP binding;1.38579072956865e-06!GO:0043123;positive regulation of I-kappaB kinase/NF-kappaB cascade;1.50614552912655e-06!GO:0006916;anti-apoptosis;1.86175189810367e-06!GO:0015980;energy derivation by oxidation of organic compounds;2.15823405113446e-06!GO:0051789;response to protein stimulus;2.28990377491117e-06!GO:0006986;response to unfolded protein;2.28990377491117e-06!GO:0044431;Golgi apparatus part;2.6303560555769e-06!GO:0045333;cellular respiration;2.89651406041359e-06!GO:0003779;actin binding;2.93771837223115e-06!GO:0016481;negative regulation of transcription;3.32283320069706e-06!GO:0005770;late endosome;3.36980682715191e-06!GO:0006357;regulation of transcription from RNA polymerase II promoter;3.95860979281331e-06!GO:0003924;GTPase activity;4.04113633181564e-06!GO:0048475;coated membrane;4.26855039065552e-06!GO:0030117;membrane coat;4.26855039065552e-06!GO:0015986;ATP synthesis coupled proton transport;4.26855039065552e-06!GO:0015985;energy coupled proton transport, down electrochemical gradient;4.26855039065552e-06!GO:0019787;small conjugating protein ligase activity;5.00244213997599e-06!GO:0044453;nuclear membrane part;5.33496052458025e-06!GO:0040008;regulation of growth;5.75326579676277e-06!GO:0006099;tricarboxylic acid cycle;6.16708044039235e-06!GO:0046356;acetyl-CoA catabolic process;6.16708044039235e-06!GO:0030120;vesicle coat;8.45478089942965e-06!GO:0030662;coated vesicle membrane;8.45478089942965e-06!GO:0007249;I-kappaB kinase/NF-kappaB cascade;8.88712258675835e-06!GO:0048518;positive regulation of biological process;9.7419553577472e-06!GO:0051170;nuclear import;1.02412378620505e-05!GO:0019829;cation-transporting ATPase activity;1.0278095588845e-05!GO:0006259;DNA metabolic process;1.07083682741092e-05!GO:0045934;negative regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;1.08104208972369e-05!GO:0006606;protein import into nucleus;1.08518241741283e-05!GO:0009109;coenzyme catabolic process;1.29752549734213e-05!GO:0051187;cofactor catabolic process;1.33602341015752e-05!GO:0032561;guanyl ribonucleotide binding;1.41498070792229e-05!GO:0019001;guanyl nucleotide binding;1.41498070792229e-05!GO:0009056;catabolic process;1.42155854100929e-05!GO:0007242;intracellular signaling cascade;1.55045589839941e-05!GO:0030554;adenyl nucleotide binding;1.58866814051067e-05!GO:0016607;nuclear speck;1.91580794833138e-05!GO:0006084;acetyl-CoA metabolic process;2.06064721376748e-05!GO:0006950;response to stress;2.09779008136847e-05!GO:0045786;negative regulation of progression through cell cycle;2.47190511625354e-05!GO:0009205;purine ribonucleoside triphosphate metabolic process;2.54219421400006e-05!GO:0009144;purine nucleoside triphosphate metabolic process;2.54219421400006e-05!GO:0005798;Golgi-associated vesicle;3.20013124644469e-05!GO:0044440;endosomal part;3.22412850923808e-05!GO:0010008;endosome membrane;3.22412850923808e-05!GO:0009199;ribonucleoside triphosphate metabolic process;3.31086060761013e-05!GO:0016491;oxidoreductase activity;3.36640609367523e-05!GO:0016563;transcription activator activity;3.36640609367523e-05!GO:0009206;purine ribonucleoside triphosphate biosynthetic process;3.76670980191408e-05!GO:0009145;purine nucleoside triphosphate biosynthetic process;3.76670980191408e-05!GO:0006888;ER to Golgi vesicle-mediated transport;4.28490734798935e-05!GO:0032559;adenyl ribonucleotide binding;4.36200483562052e-05!GO:0009141;nucleoside triphosphate metabolic process;4.42117529217552e-05!GO:0003713;transcription coactivator activity;4.57350780006925e-05!GO:0006897;endocytosis;4.88124914989009e-05!GO:0010324;membrane invagination;4.88124914989009e-05!GO:0009142;nucleoside triphosphate biosynthetic process;5.03708908772022e-05!GO:0009201;ribonucleoside triphosphate biosynthetic process;5.03708908772022e-05!GO:0016879;ligase activity, forming carbon-nitrogen bonds;5.20198576957317e-05!GO:0030133;transport vesicle;5.23480519167722e-05!GO:0046034;ATP metabolic process;6.3482617408351e-05!GO:0016469;proton-transporting two-sector ATPase complex;6.48566265171327e-05!GO:0005524;ATP binding;6.51619062941076e-05!GO:0009150;purine ribonucleotide metabolic process;7.47662631075034e-05!GO:0009966;regulation of signal transduction;7.53690549316505e-05!GO:0006754;ATP biosynthetic process;7.83002401456281e-05!GO:0006753;nucleoside phosphate metabolic process;7.83002401456281e-05!GO:0015078;hydrogen ion transmembrane transporter activity;8.04070925539038e-05!GO:0005741;mitochondrial outer membrane;8.58821767434973e-05!GO:0005788;endoplasmic reticulum lumen;8.65581370861699e-05!GO:0007010;cytoskeleton organization and biogenesis;8.83440957435358e-05!GO:0016881;acid-amino acid ligase activity;9.07185701707328e-05!GO:0045892;negative regulation of transcription, DNA-dependent;9.07185701707328e-05!GO:0000139;Golgi membrane;9.07185701707328e-05!GO:0009152;purine ribonucleotide biosynthetic process;9.97231206373739e-05!GO:0006163;purine nucleotide metabolic process;0.000100986954113242!GO:0051188;cofactor biosynthetic process;0.000104805077133802!GO:0045259;proton-transporting ATP synthase complex;0.000108606541097481!GO:0005643;nuclear pore;0.00011911875157884!GO:0030027;lamellipodium;0.000121736137945141!GO:0008286;insulin receptor signaling pathway;0.00012393024017067!GO:0031968;organelle outer membrane;0.000132449732570745!GO:0006613;cotranslational protein targeting to membrane;0.000132920181940156!GO:0005905;coated pit;0.000141207194229239!GO:0030867;rough endoplasmic reticulum membrane;0.000142183564646074!GO:0006164;purine nucleotide biosynthetic process;0.000143544273202549!GO:0019867;outer membrane;0.000150711781657646!GO:0005791;rough endoplasmic reticulum;0.000170949116626489!GO:0007049;cell cycle;0.000205800905889412!GO:0001726;ruffle;0.000263574271176826!GO:0009259;ribonucleotide metabolic process;0.000263574271176826!GO:0000245;spliceosome assembly;0.00028077212636316!GO:0051726;regulation of cell cycle;0.000377331930028786!GO:0030041;actin filament polymerization;0.000404067241845448!GO:0008654;phospholipid biosynthetic process;0.000415917501754137!GO:0030308;negative regulation of cell growth;0.000548483161435175!GO:0000074;regulation of progression through cell cycle;0.000607071091647259!GO:0045792;negative regulation of cell size;0.000607071091647259!GO:0005667;transcription factor complex;0.000673058501844033!GO:0030532;small nuclear ribonucleoprotein complex;0.000677244585797866!GO:0019222;regulation of metabolic process;0.000690719262058545!GO:0048471;perinuclear region of cytoplasm;0.000703863327222437!GO:0006325;establishment and/or maintenance of chromatin architecture;0.000741516711506012!GO:0009260;ribonucleotide biosynthetic process;0.000742619238333815!GO:0005048;signal sequence binding;0.000755939247987983!GO:0001666;response to hypoxia;0.00077670511233296!GO:0005100;Rho GTPase activator activity;0.000794936738616468!GO:0055086;nucleobase, nucleoside and nucleotide metabolic process;0.000799805354166112!GO:0007265;Ras protein signal transduction;0.000804012209477857!GO:0005839;proteasome core complex (sensu Eukaryota);0.000805233014049032!GO:0016197;endosome transport;0.000829023986817388!GO:0009108;coenzyme biosynthetic process;0.000901717694653917!GO:0000151;ubiquitin ligase complex;0.000901717694653917!GO:0046930;pore complex;0.000914278268302224!GO:0048468;cell development;0.000914777451635158!GO:0008154;actin polymerization and/or depolymerization;0.000933883723906603!GO:0009967;positive regulation of signal transduction;0.000934676353670692!GO:0007005;mitochondrion organization and biogenesis;0.000976812145781685!GO:0032446;protein modification by small protein conjugation;0.00104034071191953!GO:0008047;enzyme activator activity;0.00106978391673465!GO:0016567;protein ubiquitination;0.00106978391673465!GO:0065002;intracellular protein transport across a membrane;0.00111984567422838!GO:0030695;GTPase regulator activity;0.00113891812963237!GO:0005769;early endosome;0.00115066863321525!GO:0042802;identical protein binding;0.00118445332522074!GO:0008250;oligosaccharyl transferase complex;0.00125054625470733!GO:0043623;cellular protein complex assembly;0.00136028063337175!GO:0045926;negative regulation of growth;0.00139599164595375!GO:0045893;positive regulation of transcription, DNA-dependent;0.00144554284414644!GO:0016772;transferase activity, transferring phosphorus-containing groups;0.00144931092921641!GO:0043566;structure-specific DNA binding;0.00146370024937848!GO:0004576;oligosaccharyl transferase activity;0.00152285109769784!GO:0044262;cellular carbohydrate metabolic process;0.00152741586632021!GO:0005762;mitochondrial large ribosomal subunit;0.00155518641490551!GO:0000315;organellar large ribosomal subunit;0.00155518641490551!GO:0005083;small GTPase regulator activity;0.00162079499688184!GO:0050657;nucleic acid transport;0.00163257847320375!GO:0051236;establishment of RNA localization;0.00163257847320375!GO:0050658;RNA transport;0.00163257847320375!GO:0031202;RNA splicing factor activity, transesterification mechanism;0.00166541003197971!GO:0004177;aminopeptidase activity;0.00167776902322823!GO:0006323;DNA packaging;0.00175997427850445!GO:0004579;dolichyl-diphosphooligosaccharide-protein glycotransferase activity;0.00179477944781891!GO:0006403;RNA localization;0.00183972990657826!GO:0016876;ligase activity, forming aminoacyl-tRNA and related compounds;0.00186520504502365!GO:0004812;aminoacyl-tRNA ligase activity;0.00186520504502365!GO:0016875;ligase activity, forming carbon-oxygen bonds;0.00186520504502365!GO:0031589;cell-substrate adhesion;0.00193963666391339!GO:0007167;enzyme linked receptor protein signaling pathway;0.00196443890676763!GO:0016887;ATPase activity;0.00197992809474231!GO:0033178;proton-transporting two-sector ATPase complex, catalytic domain;0.00198934498570596!GO:0015077;monovalent inorganic cation transmembrane transporter activity;0.00203962622429249!GO:0005096;GTPase activator activity;0.0022088104332976!GO:0006607;NLS-bearing substrate import into nucleus;0.00233320532731102!GO:0051128;regulation of cellular component organization and biogenesis;0.00235571184065549!GO:0045261;proton-transporting ATP synthase complex, catalytic core F(1);0.002398930316867!GO:0003697;single-stranded DNA binding;0.00241174675944797!GO:0019843;rRNA binding;0.00242962536774061!GO:0045941;positive regulation of transcription;0.00251081135426668!GO:0033116;ER-Golgi intermediate compartment membrane;0.00270777379549455!GO:0005885;Arp2/3 protein complex;0.0027905943761238!GO:0051427;hormone receptor binding;0.00281987155410354!GO:0016679;oxidoreductase activity, acting on diphenols and related substances as donors;0.0028228951825593!GO:0016681;oxidoreductase activity, acting on diphenols and related substances as donors, cytochrome as acceptor;0.0028228951825593!GO:0008121;ubiquinol-cytochrome-c reductase activity;0.0028228951825593!GO:0051287;NAD binding;0.00290438203598703!GO:0006892;post-Golgi vesicle-mediated transport;0.00292409160568318!GO:0033673;negative regulation of kinase activity;0.00298510417431035!GO:0006469;negative regulation of protein kinase activity;0.00298510417431035!GO:0045935;positive regulation of nucleobase, nucleoside, nucleotide and nucleic acid metabolic process;0.00303368624510209!GO:0016591;DNA-directed RNA polymerase II, holoenzyme;0.00325069300492815!GO:0009117;nucleotide metabolic process;0.00328479099367508!GO:0051920;peroxiredoxin activity;0.00328857693103594!GO:0000902;cell morphogenesis;0.00336437529530421!GO:0032989;cellular structure morphogenesis;0.00336437529530421!GO:0004298;threonine endopeptidase activity;0.003498369126026!GO:0051087;chaperone binding;0.00365353431836829!GO:0051270;regulation of cell motility;0.0037892162334545!GO:0030530;heterogeneous nuclear ribonucleoprotein complex;0.00383576108707408!GO:0006612;protein targeting to membrane;0.00387219006404848!GO:0030132;clathrin coat of coated pit;0.00395733785868432!GO:0016791;phosphoric monoester hydrolase activity;0.00404791523596141!GO:0043038;amino acid activation;0.0040960559829563!GO:0006418;tRNA aminoacylation for protein translation;0.0040960559829563!GO:0043039;tRNA aminoacylation;0.0040960559829563!GO:0006752;group transfer coenzyme metabolic process;0.00432673240755658!GO:0005774;vacuolar membrane;0.00437751890599194!GO:0007160;cell-matrix adhesion;0.00448264681224714!GO:0035257;nuclear hormone receptor binding;0.00480410401209035!GO:0019904;protein domain specific binding;0.00480410401209035!GO:0031902;late endosome membrane;0.00480410401209035!GO:0043488;regulation of mRNA stability;0.00480428870299047!GO:0043487;regulation of RNA stability;0.00480428870299047!GO:0042254;ribosome biogenesis and assembly;0.00509515943736613!GO:0017166;vinculin binding;0.00520007165638921!GO:0006979;response to oxidative stress;0.00520007165638921!GO:0001944;vasculature development;0.00521089866818823!GO:0008139;nuclear localization sequence binding;0.00531424801477794!GO:0016281;eukaryotic translation initiation factor 4F complex;0.00549572719304245!GO:0042623;ATPase activity, coupled;0.00565071421524668!GO:0008287;protein serine/threonine phosphatase complex;0.00580209206553422!GO:0005753;mitochondrial proton-transporting ATP synthase complex;0.00585114789571988!GO:0007266;Rho protein signal transduction;0.00587397166699215!GO:0015931;nucleobase, nucleoside, nucleotide and nucleic acid transport;0.00594018467295914!GO:0006402;mRNA catabolic process;0.00605454139438727!GO:0030518;steroid hormone receptor signaling pathway;0.00610918454196708!GO:0042625;ATPase activity, coupled to transmembrane movement of ions;0.00617753783868808!GO:0007179;transforming growth factor beta receptor signaling pathway;0.00624635146692147!GO:0050662;coenzyme binding;0.0062466101327235!GO:0043021;ribonucleoprotein binding;0.00629898052380756!GO:0035258;steroid hormone receptor binding;0.00689818458569724!GO:0003724;RNA helicase activity;0.00689818458569724!GO:0003755;peptidyl-prolyl cis-trans isomerase activity;0.00737438820507899!GO:0016627;oxidoreductase activity, acting on the CH-CH group of donors;0.00764859652604586!GO:0065009;regulation of a molecular function;0.007662537449283!GO:0030118;clathrin coat;0.00772809825261533!GO:0006693;prostaglandin metabolic process;0.00782527576900039!GO:0006692;prostanoid metabolic process;0.00782527576900039!GO:0004722;protein serine/threonine phosphatase activity;0.00784674254594272!GO:0008610;lipid biosynthetic process;0.00784674254594272!GO:0005852;eukaryotic translation initiation factor 3 complex;0.00787803440162587!GO:0051348;negative regulation of transferase activity;0.00794715949885822!GO:0004860;protein kinase inhibitor activity;0.00796160658091112!GO:0001568;blood vessel development;0.00796915072390938!GO:0007050;cell cycle arrest;0.00809575368151485!GO:0051252;regulation of RNA metabolic process;0.00835137421711637!GO:0046983;protein dimerization activity;0.0084315196270729!GO:0018196;peptidyl-asparagine modification;0.0084315196270729!GO:0018279;protein amino acid N-linked glycosylation via asparagine;0.0084315196270729!GO:0005159;insulin-like growth factor receptor binding;0.00898852441220715!GO:0051028;mRNA transport;0.00917908929715769!GO:0030134;ER to Golgi transport vesicle;0.00931562885901453!GO:0016568;chromatin modification;0.00934135531668755!GO:0008283;cell proliferation;0.00956923469913918!GO:0000122;negative regulation of transcription from RNA polymerase II promoter;0.00996319752079183!GO:0004721;phosphoprotein phosphatase activity;0.0106488824113212!GO:0003702;RNA polymerase II transcription factor activity;0.0106805322049612!GO:0016859;cis-trans isomerase activity;0.0107453512672058!GO:0045637;regulation of myeloid cell differentiation;0.0111518545465101!GO:0007169;transmembrane receptor protein tyrosine kinase signaling pathway;0.0112893299517847!GO:0048487;beta-tubulin binding;0.01155141221569!GO:0065004;protein-DNA complex assembly;0.0115925633909554!GO:0005765;lysosomal membrane;0.0115925633909554!GO:0030663;COPI coated vesicle membrane;0.0119636941051555!GO:0030126;COPI vesicle coat;0.0119636941051555!GO:0051540;metal cluster binding;0.012018975946886!GO:0051536;iron-sulfur cluster binding;0.012018975946886!GO:0044255;cellular lipid metabolic process;0.0127988182967968!GO:0006974;response to DNA damage stimulus;0.0128616864145775!GO:0015631;tubulin binding;0.0131065442118691!GO:0016740;transferase activity;0.0131065442118691!GO:0044437;vacuolar part;0.0131568081976244!GO:0019752;carboxylic acid metabolic process;0.0134345680739028!GO:0016311;dephosphorylation;0.0135348522089424!GO:0006082;organic acid metabolic process;0.0139718307230912!GO:0006333;chromatin assembly or disassembly;0.0143756384085435!GO:0040012;regulation of locomotion;0.0148012217258938!GO:0009719;response to endogenous stimulus;0.0148034142186864!GO:0040011;locomotion;0.0150525801376071!GO:0015405;P-P-bond-hydrolysis-driven transmembrane transporter activity;0.0151672042421955!GO:0015399;primary active transmembrane transporter activity;0.0151672042421955!GO:0022415;viral reproductive process;0.0155934261161051!GO:0051098;regulation of binding;0.0156705058082434!GO:0019838;growth factor binding;0.0157513385176175!GO:0022402;cell cycle process;0.0160511563170364!GO:0030127;COPII vesicle coat;0.0161310152334025!GO:0012507;ER to Golgi transport vesicle membrane;0.0161310152334025!GO:0030031;cell projection biogenesis;0.0165932608762142!GO:0030865;cortical cytoskeleton organization and biogenesis;0.0167509610248506!GO:0016676;oxidoreductase activity, acting on heme group of donors, oxygen as acceptor;0.017032863069497!GO:0015002;heme-copper terminal oxidase activity;0.017032863069497!GO:0016675;oxidoreductase activity, acting on heme group of donors;0.017032863069497!GO:0004129;cytochrome-c oxidase activity;0.017032863069497!GO:0016628;oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor;0.0176360527720726!GO:0030658;transport vesicle membrane;0.0178475220072519!GO:0017015;regulation of transforming growth factor beta receptor signaling pathway;0.0181090898747356!GO:0051168;nuclear export;0.01813349602861!GO:0030145;manganese ion binding;0.0182686449408156!GO:0030137;COPI-coated vesicle;0.018470399031484!GO:0046467;membrane lipid biosynthetic process;0.0185767485455871!GO:0048500;signal recognition particle;0.0191363754076017!GO:0006118;electron transport;0.0202643042449375!GO:0016584;nucleosome positioning;0.0207739225689958!GO:0035035;histone acetyltransferase binding;0.0208300039254474!GO:0030522;intracellular receptor-mediated signaling pathway;0.0210043271653148!GO:0050811;GABA receptor binding;0.0210118485913262!GO:0005637;nuclear inner membrane;0.0210143504011615!GO:0031072;heat shock protein binding;0.0220034344976667!GO:0005912;adherens junction;0.0222125136207837!GO:0043681;protein import into mitochondrion;0.022264191185075!GO:0030100;regulation of endocytosis;0.0229977020773881!GO:0045454;cell redox homeostasis;0.0237149082561585!GO:0060090;molecular adaptor activity;0.0237850990607177!GO:0005813;centrosome;0.0239967001664272!GO:0048659;smooth muscle cell proliferation;0.0240414177343804!GO:0048660;regulation of smooth muscle cell proliferation;0.02482262763836!GO:0018193;peptidyl-amino acid modification;0.0253404364857397!GO:0006414;translational elongation;0.0255960026603051!GO:0000314;organellar small ribosomal subunit;0.0259910391799215!GO:0005763;mitochondrial small ribosomal subunit;0.0259910391799215!GO:0006401;RNA catabolic process;0.0260757505602748!GO:0030235;nitric-oxide synthase regulator activity;0.0260757505602748!GO:0006629;lipid metabolic process;0.0261875670176746!GO:0009893;positive regulation of metabolic process;0.026540788929316!GO:0030119;AP-type membrane coat adaptor complex;0.0268154346019687!GO:0007040;lysosome organization and biogenesis;0.0270085153203394!GO:0019210;kinase inhibitor activity;0.0273743005070953!GO:0000785;chromatin;0.0274981284937363!GO:0006635;fatty acid beta-oxidation;0.0279753490384196!GO:0005099;Ras GTPase activator activity;0.0283092160419239!GO:0051101;regulation of DNA binding;0.0284423879653079!GO:0006891;intra-Golgi vesicle-mediated transport;0.0292582576381985!GO:0022890;inorganic cation transmembrane transporter activity;0.0295030230649781!GO:0004386;helicase activity;0.0296985310844631!GO:0006509;membrane protein ectodomain proteolysis;0.02980422566884!GO:0033619;membrane protein proteolysis;0.02980422566884!GO:0045603;positive regulation of endothelial cell differentiation;0.0300594278441765!GO:0006839;mitochondrial transport;0.0302273356105375!GO:0051276;chromosome organization and biogenesis;0.0306253820054089!GO:0006614;SRP-dependent cotranslational protein targeting to membrane;0.0307893148353432!GO:0045047;protein targeting to ER;0.0307893148353432!GO:0031272;regulation of pseudopodium formation;0.0307893148353432!GO:0031269;pseudopodium formation;0.0307893148353432!GO:0031344;regulation of cell projection organization and biogenesis;0.0307893148353432!GO:0031268;pseudopodium organization and biogenesis;0.0307893148353432!GO:0031346;positive regulation of cell projection organization and biogenesis;0.0307893148353432!GO:0031274;positive regulation of pseudopodium formation;0.0307893148353432!GO:0045639;positive regulation of myeloid cell differentiation;0.0308470205730182!GO:0002763;positive regulation of myeloid leukocyte differentiation;0.0315208472918448!GO:0016780;phosphotransferase activity, for other substituted phosphate groups;0.0316717317093711!GO:0030833;regulation of actin filament polymerization;0.0325525815642779!GO:0016301;kinase activity;0.0330024056037757!GO:0006611;protein export from nucleus;0.0331712696205036!GO:0008026;ATP-dependent helicase activity;0.0336514903837657!GO:0051674;localization of cell;0.0338971514635603!GO:0006928;cell motility;0.0338971514635603!GO:0003729;mRNA binding;0.0341547908179372!GO:0006470;protein amino acid dephosphorylation;0.034600992853848!GO:0030660;Golgi-associated vesicle membrane;0.0346180591905945!GO:0006650;glycerophospholipid metabolic process;0.0352284396673435!GO:0043492;ATPase activity, coupled to movement of substances;0.0356144156110635!GO:0045045;secretory pathway;0.0357435348077607!GO:0042026;protein refolding;0.0357745819115126!GO:0006890;retrograde vesicle-mediated transport, Golgi to ER;0.0361371423666952!GO:0016853;isomerase activity;0.0375408739695449!GO:0003690;double-stranded DNA binding;0.0381029119755008!GO:0007034;vacuolar transport;0.0382972393203994!GO:0046474;glycerophospholipid biosynthetic process;0.0392350212414067!GO:0030334;regulation of cell migration;0.0404590346554278!GO:0043284;biopolymer biosynthetic process;0.0406549495819354!GO:0000059;protein import into nucleus, docking;0.0409543367219975!GO:0051493;regulation of cytoskeleton organization and biogenesis;0.0409543367219975!GO:0033043;regulation of organelle organization and biogenesis;0.0409543367219975!GO:0005811;lipid particle;0.0409543367219975!GO:0030131;clathrin adaptor complex;0.041279235971845!GO:0045334;clathrin-coated endocytic vesicle;0.0414325103787501!GO:0007033;vacuole organization and biogenesis;0.0417224695019029!GO:0031323;regulation of cellular metabolic process;0.0417896895148976!GO:0019318;hexose metabolic process;0.0423953750285814!GO:0008147;structural constituent of bone;0.0425999158889262!GO:0042626;ATPase activity, coupled to transmembrane movement of substances;0.0425999158889262!GO:0030911;TPR domain binding;0.0426963754153987!GO:0007041;lysosomal transport;0.0429052300103984!GO:0003746;translation elongation factor activity;0.0430828661019249!GO:0043086;negative regulation of catalytic activity;0.0430917356285125!GO:0006643;membrane lipid metabolic process;0.0430917356285125!GO:0008064;regulation of actin polymerization and/or depolymerization;0.043697130820778!GO:0030866;cortical actin cytoskeleton organization and biogenesis;0.0439235646140774!GO:0001525;angiogenesis;0.0442012184054148!GO:0016126;sterol biosynthetic process;0.0444088806799449!GO:0008312;7S RNA binding;0.0444088806799449!GO:0032763;regulation of mast cell cytokine production;0.0446765524402476!GO:0032762;mast cell cytokine production;0.0446765524402476!GO:0008186;RNA-dependent ATPase activity;0.0446765524402476!GO:0015630;microtubule cytoskeleton;0.0447648803914691!GO:0051049;regulation of transport;0.0448097803618029!GO:0030659;cytoplasmic vesicle membrane;0.0449362970938779!GO:0045263;proton-transporting ATP synthase complex, coupling factor F(o);0.0449889800169134!GO:0033177;proton-transporting two-sector ATPase complex, proton-transporting domain;0.0449889800169134!GO:0009165;nucleotide biosynthetic process;0.046007854478147!GO:0051539;4 iron, 4 sulfur cluster binding;0.0462370825531141!GO:0030140;trans-Golgi network transport vesicle;0.0480700459532315!GO:0005786;signal recognition particle, endoplasmic reticulum targeting;0.0483764595355861!GO:0017048;Rho GTPase binding;0.0485980671437202!GO:0004674;protein serine/threonine kinase activity;0.0487796665240745!GO:0007006;mitochondrial membrane organization and biogenesis;0.049960506063829
|sample_id=10080
|sample_id=10080
|sample_note=
|sample_note=
Line 76: Line 99:
|sample_tissue=breast
|sample_tissue=breast
|top_motifs=AR:2.65899350688;NFATC1..3:2.48839122977;STAT2,4,6:2.36731586344;TFAP2{A,C}:2.10620513794;FOXO1,3,4:1.99641646558;MTF1:1.97621432515;TFAP2B:1.87330506314;SP1:1.84728293828;PATZ1:1.8222761949;TFCP2:1.80185668918;HIC1:1.77329031347;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.73450223023;EP300:1.66719535657;MAZ:1.59574481425;MED-1{core}:1.51422290772;XCPE1{core}:1.51416460555;TBP:1.50896548078;SRF:1.3107929734;MYFfamily:1.28763384719;ZNF423:1.25986875846;IKZF1:1.24781568097;SOX5:1.22343908363;TLX1..3_NFIC{dimer}:1.22107976265;GFI1B:1.20285351527;MTE{core}:1.17717795072;FOX{I1,J2}:1.14541080616;FOXQ1:1.14051442006;PAX6:1.12864123048;FOXL1:1.1216246215;HMX1:1.12089675565;EGR1..3:1.11559774842;PRDM1:1.07482986668;HBP1_HMGB_SSRP1_UBTF:1.05415667468;GTF2I:1.04284351964;SPZ1:1.04162560676;FOX{D1,D2}:1.01326489859;HSF1,2:0.997404964657;GATA4:0.9551130859;HNF4A_NR2F1,2:0.906910363676;TFAP4:0.866371153355;MZF1:0.865358223644;HOX{A6,A7,B6,B7}:0.756166064494;ATF6:0.745563143664;TEAD1:0.698209227165;ZNF238:0.682528241391;TGIF1:0.677896990294;BREu{core}:0.672800759353;TEF:0.658370590874;GZF1:0.650266453687;IKZF2:0.616022801128;GTF2A1,2:0.61180836395;ESRRA:0.607568455999;MEF2{A,B,C,D}:0.602692481364;TLX2:0.593041537447;TBX4,5:0.582642636545;NR1H4:0.549817619189;NHLH1,2:0.548968222388;SOX{8,9,10}:0.535846804145;ATF2:0.529834884732;ZIC1..3:0.519673110531;PDX1:0.517762113133;STAT1,3:0.505328436491;ETS1,2:0.500770570375;GCM1,2:0.498278973393;ZNF148:0.493658970348;PAX5:0.485059226533;ZFP161:0.484578523538;SREBF1,2:0.474101750225;FOXP3:0.46062112863;PAX1,9:0.432088580846;SMAD1..7,9:0.408923082084;XBP1:0.402637803058;RBPJ:0.395784887462;IRF7:0.389868389696;RREB1:0.378537851054;bHLH_family:0.373302352107;HIF1A:0.371043897065;ATF4:0.316850128838;SNAI1..3:0.300951732408;EBF1:0.290522158472;CDC5L:0.287585090358;MAFB:0.263067055489;RXR{A,B,G}:0.262831220445;BPTF:0.243536022497;NR3C1:0.235892924055;NFIX:0.190174237329;GATA6:0.179526978406;FOX{F1,F2,J1}:0.179167574278;HAND1,2:0.176611916791;SPIB:0.174445099024;RORA:0.153007923428;REST:0.135533053946;ARID5B:0.123387195682;ZEB1:0.115564180756;PPARG:0.110487309079;HNF1A:0.0704422280315;MYBL2:0.0652736531577;NKX2-1,4:0.0395456848024;IRF1,2:0.0113230278034;NR6A1:0.0108447449812;HLF:-0.00111668292607;GLI1..3:-0.00316163965467;LMO2:-0.015248823791;LHX3,4:-0.0202174388485;CEBPA,B_DDIT3:-0.0264224102653;TP53:-0.0337858958954;SOX2:-0.038778715381;KLF4:-0.0429986687378;SPI1:-0.0553320816295;FOSL2:-0.0554472689926;POU2F1..3:-0.0736155879198;NFIL3:-0.075116856567;ELF1,2,4:-0.0832186186565;NFE2L1:-0.107756494368;UFEwm:-0.119055875174;ZNF384:-0.122915467752;TFDP1:-0.126237559414;JUN:-0.137635748768;NKX2-3_NKX2-5:-0.165531005101;ALX4:-0.176392995766;DMAP1_NCOR{1,2}_SMARC:-0.194190936662;RUNX1..3:-0.207545149129;FOXA2:-0.212100419033;AIRE:-0.21860285083;NKX2-2,8:-0.218908312862;ESR1:-0.22406832633;NANOG:-0.231845664712;AHR_ARNT_ARNT2:-0.265023556355;T:-0.282139436846;POU5F1:-0.285692907207;NFKB1_REL_RELA:-0.3041416977;POU6F1:-0.354031722456;NFE2:-0.356869064411;FOXN1:-0.368281006653;MYOD1:-0.373490732848;EVI1:-0.399736887825;FOS_FOS{B,L1}_JUN{B,D}:-0.402476740389;ZNF143:-0.402532697732;CDX1,2,4:-0.408471880911;GFI1:-0.412263473243;RFX2..5_RFXANK_RFXAP:-0.421015270436;NFE2L2:-0.4221409674;PRRX1,2:-0.433522705223;CUX2:-0.485010511397;PAX3,7:-0.487655924183;NFY{A,B,C}:-0.490645682991;POU3F1..4:-0.490663622652;BACH2:-0.502903614672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.510846669999;RXRA_VDR{dimer}:-0.510980560665;FOXM1:-0.542966213203;VSX1,2:-0.556307879412;ZBTB6:-0.569756816861;HOX{A5,B5}:-0.583907384708;SOX17:-0.602557136919;FOXD3:-0.605766673065;HES1:-0.63364075248;STAT5{A,B}:-0.645956302521;NR5A1,2:-0.656571538819;ADNP_IRX_SIX_ZHX:-0.693079629623;HOX{A4,D4}:-0.705822992782;ALX1:-0.707753253574;NRF1:-0.71869974855;PBX1:-0.724047379605;ATF5_CREB3:-0.753439888523;NKX3-2:-0.757888262392;NANOG{mouse}:-0.768144564708;DBP:-0.777775695756;PITX1..3:-0.81746408369;LEF1_TCF7_TCF7L1,2:-0.851033411136;CREB1:-0.851482360106;PAX2:-0.855620662005;FOXP1:-0.862285215284;RFX1:-0.884614374871;CRX:-0.921514272931;OCT4_SOX2{dimer}:-0.951269778779;TOPORS:-0.977484577618;TAL1_TCF{3,4,12}:-0.982693923569;HMGA1,2:-0.996463537228;ZBTB16:-1.00297487266;E2F1..5:-1.0324317438;PAX8:-1.14041481174;NKX6-1,2:-1.2231753783;EN1,2:-1.2597175339;MYB:-1.38898136639;PAX4:-1.4826735465;ONECUT1,2:-1.64766712609;HOXA9_MEIS1:-1.65806086322;YY1:-1.87333990705;NKX3-1:-1.93105481542;POU1F1:-1.9492895749;ELK1,4_GABP{A,B1}:-2.06229588556
|top_motifs=AR:2.65899350688;NFATC1..3:2.48839122977;STAT2,4,6:2.36731586344;TFAP2{A,C}:2.10620513794;FOXO1,3,4:1.99641646558;MTF1:1.97621432515;TFAP2B:1.87330506314;SP1:1.84728293828;PATZ1:1.8222761949;TFCP2:1.80185668918;HIC1:1.77329031347;RXR{A,B,G}_{NR1H2,PPAR}dimers:1.73450223023;EP300:1.66719535657;MAZ:1.59574481425;MED-1{core}:1.51422290772;XCPE1{core}:1.51416460555;TBP:1.50896548078;SRF:1.3107929734;MYFfamily:1.28763384719;ZNF423:1.25986875846;IKZF1:1.24781568097;SOX5:1.22343908363;TLX1..3_NFIC{dimer}:1.22107976265;GFI1B:1.20285351527;MTE{core}:1.17717795072;FOX{I1,J2}:1.14541080616;FOXQ1:1.14051442006;PAX6:1.12864123048;FOXL1:1.1216246215;HMX1:1.12089675565;EGR1..3:1.11559774842;PRDM1:1.07482986668;HBP1_HMGB_SSRP1_UBTF:1.05415667468;GTF2I:1.04284351964;SPZ1:1.04162560676;FOX{D1,D2}:1.01326489859;HSF1,2:0.997404964657;GATA4:0.9551130859;HNF4A_NR2F1,2:0.906910363676;TFAP4:0.866371153355;MZF1:0.865358223644;HOX{A6,A7,B6,B7}:0.756166064494;ATF6:0.745563143664;TEAD1:0.698209227165;ZNF238:0.682528241391;TGIF1:0.677896990294;BREu{core}:0.672800759353;TEF:0.658370590874;GZF1:0.650266453687;IKZF2:0.616022801128;GTF2A1,2:0.61180836395;ESRRA:0.607568455999;MEF2{A,B,C,D}:0.602692481364;TLX2:0.593041537447;TBX4,5:0.582642636545;NR1H4:0.549817619189;NHLH1,2:0.548968222388;SOX{8,9,10}:0.535846804145;ATF2:0.529834884732;ZIC1..3:0.519673110531;PDX1:0.517762113133;STAT1,3:0.505328436491;ETS1,2:0.500770570375;GCM1,2:0.498278973393;ZNF148:0.493658970348;PAX5:0.485059226533;ZFP161:0.484578523538;SREBF1,2:0.474101750225;FOXP3:0.46062112863;PAX1,9:0.432088580846;SMAD1..7,9:0.408923082084;XBP1:0.402637803058;RBPJ:0.395784887462;IRF7:0.389868389696;RREB1:0.378537851054;bHLH_family:0.373302352107;HIF1A:0.371043897065;ATF4:0.316850128838;SNAI1..3:0.300951732408;EBF1:0.290522158472;CDC5L:0.287585090358;MAFB:0.263067055489;RXR{A,B,G}:0.262831220445;BPTF:0.243536022497;NR3C1:0.235892924055;NFIX:0.190174237329;GATA6:0.179526978406;FOX{F1,F2,J1}:0.179167574278;HAND1,2:0.176611916791;SPIB:0.174445099024;RORA:0.153007923428;REST:0.135533053946;ARID5B:0.123387195682;ZEB1:0.115564180756;PPARG:0.110487309079;HNF1A:0.0704422280315;MYBL2:0.0652736531577;NKX2-1,4:0.0395456848024;IRF1,2:0.0113230278034;NR6A1:0.0108447449812;HLF:-0.00111668292607;GLI1..3:-0.00316163965467;LMO2:-0.015248823791;LHX3,4:-0.0202174388485;CEBPA,B_DDIT3:-0.0264224102653;TP53:-0.0337858958954;SOX2:-0.038778715381;KLF4:-0.0429986687378;SPI1:-0.0553320816295;FOSL2:-0.0554472689926;POU2F1..3:-0.0736155879198;NFIL3:-0.075116856567;ELF1,2,4:-0.0832186186565;NFE2L1:-0.107756494368;UFEwm:-0.119055875174;ZNF384:-0.122915467752;TFDP1:-0.126237559414;JUN:-0.137635748768;NKX2-3_NKX2-5:-0.165531005101;ALX4:-0.176392995766;DMAP1_NCOR{1,2}_SMARC:-0.194190936662;RUNX1..3:-0.207545149129;FOXA2:-0.212100419033;AIRE:-0.21860285083;NKX2-2,8:-0.218908312862;ESR1:-0.22406832633;NANOG:-0.231845664712;AHR_ARNT_ARNT2:-0.265023556355;T:-0.282139436846;POU5F1:-0.285692907207;NFKB1_REL_RELA:-0.3041416977;POU6F1:-0.354031722456;NFE2:-0.356869064411;FOXN1:-0.368281006653;MYOD1:-0.373490732848;EVI1:-0.399736887825;FOS_FOS{B,L1}_JUN{B,D}:-0.402476740389;ZNF143:-0.402532697732;CDX1,2,4:-0.408471880911;GFI1:-0.412263473243;RFX2..5_RFXANK_RFXAP:-0.421015270436;NFE2L2:-0.4221409674;PRRX1,2:-0.433522705223;CUX2:-0.485010511397;PAX3,7:-0.487655924183;NFY{A,B,C}:-0.490645682991;POU3F1..4:-0.490663622652;BACH2:-0.502903614672;ARNT_ARNT2_BHLHB2_MAX_MYC_USF1:-0.510846669999;RXRA_VDR{dimer}:-0.510980560665;FOXM1:-0.542966213203;VSX1,2:-0.556307879412;ZBTB6:-0.569756816861;HOX{A5,B5}:-0.583907384708;SOX17:-0.602557136919;FOXD3:-0.605766673065;HES1:-0.63364075248;STAT5{A,B}:-0.645956302521;NR5A1,2:-0.656571538819;ADNP_IRX_SIX_ZHX:-0.693079629623;HOX{A4,D4}:-0.705822992782;ALX1:-0.707753253574;NRF1:-0.71869974855;PBX1:-0.724047379605;ATF5_CREB3:-0.753439888523;NKX3-2:-0.757888262392;NANOG{mouse}:-0.768144564708;DBP:-0.777775695756;PITX1..3:-0.81746408369;LEF1_TCF7_TCF7L1,2:-0.851033411136;CREB1:-0.851482360106;PAX2:-0.855620662005;FOXP1:-0.862285215284;RFX1:-0.884614374871;CRX:-0.921514272931;OCT4_SOX2{dimer}:-0.951269778779;TOPORS:-0.977484577618;TAL1_TCF{3,4,12}:-0.982693923569;HMGA1,2:-0.996463537228;ZBTB16:-1.00297487266;E2F1..5:-1.0324317438;PAX8:-1.14041481174;NKX6-1,2:-1.2231753783;EN1,2:-1.2597175339;MYB:-1.38898136639;PAX4:-1.4826735465;ONECUT1,2:-1.64766712609;HOXA9_MEIS1:-1.65806086322;YY1:-1.87333990705;NKX3-1:-1.93105481542;POU1F1:-1.9492895749;ELK1,4_GABP{A,B1}:-2.06229588556
|xref=
|zenbu_report=https://fantom.gsc.riken.jp/zenbu/reports/#miRNA_expression_atlas_human;search_select_hide=table111:FF:10080-102A8;search_select_hide=table117:FF:10080-102A8
}}
}}

Latest revision as of 12:20, 3 June 2020

Name:breast, adult, donor1
Species:Human (Homo sapiens)
Library ID:CNhs11792
Sample type:tissues
Genomic View: UCSC
RefEX:Specific genes
FANTOM CAT:1
CAGEd-oPOSSUM:link
ZENBU report :link
Additional information
Sample information
strainNA
tissuebreast
dev stage77 years old adult
sexfemale
ageNA
cell typeCELL MIXTURE - tissue sample
cell lineNA
companyAmbion
collaborationFANTOM5 OSC CORE (contact: Al Forrest)
External link for information[{{{sample_info_link}}} {{{sample_info_link}}}]
RNA information
lot number808002
catalog numberCat:AM6952
sample typetotal RNA
extraction protocol (Details)OP-RNA-extraction-totalRNA-ToTALLY-RNA-v1.0

CAGE Accession numbers
MethodSample accession id
CAGE  SAMD00005429
Library accession numbers

Library idMethodExp. accession idRun accession id
CNhs11792 CAGE DRX008628 DRR009500
Accession ID Hg19

Library idBAMCTSS
CNhs11792 DRZ000925 DRZ002310
Accession ID Hg38

Library idBAMCTSS
CNhs11792 DRZ012275 DRZ013660
Download raw sequence, BAM & CTSS
Hg19
FastaBAMCTSS
downloaddownloaddonwload
Hg38
BAMCTSS
downloaddonwload


Relative expression to median (log10)

Transcription factors with enriched expression in this sampleRanked list of transcription factor promoter expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed.



Co-expression clusters with enriched expression in this sampleRanked list of co-expression cluster expression in this sample relative to the median expression in the FANTOM5 collection is shown. Value is log10 transformed. <br>Analyst:NA <br><br>link to dataset.<br>data

Coexpression clusterscore
C0-CD14-Eosinophils-Neutrophils-Basophils-CD34-immature-Peripheral0
C1-testis-epididymis-embryonic-medulla-pituitary-trachea-caudate0
C10-occipital-temporal-parietal-brain-duodenum-Neurons-Neural0
C100-rhabdomyosarcoma-gastric-pineal-Wilms-cervical-mesodermal-endometrial0
C101-small-cerebellum-maxillary-colon-parietal-epididymis-merkel0
C102-neuroblastoma-testicular-pituitary-carcinosarcoma-rectum-acantholytic-iPS0
C103-CD4-CD8-Natural-Peripheral-Whole-Neutrophils-Basophils0
C104-Mast-Basophils-immature-CD14-CD34-eye-Natural0
C105-heart-skeletal-occipital-hippocampus-acute-Sebocyte-penis0.0308
C106-Hep2-epitheloid-placenta-cervical-rectal-anaplastic-glassy0
C107-Neutrophils-CD14-Eosinophils-Monocytederived-Whole-Peripheral-blood0
C108-breast-hepatoblastoma-MCF7-parotid-salivary-submaxillary-prostate0
C109-Reticulocytes-non-acute-Hodgkin-Burkitt-retinoblastoma-lymphoma-0.35
C11-cerebellum-medulla-pons-parietal-occipital-middle-medial0
C110-leukemia-chronic-Eosinophils-acute-Whole-CD34-Lymphatic0
C111-medulla-lung-trachea-testis-caudate-epididymis-throat0
C112-gastric-pancreas-temporal-duodenum-small-extraskeletal-adrenal0
C113-thyroid-throat-lung-lymph-small-colon-trachea0
C114-teratocarcinoma-medulloblastoma-carcinosarcoma-iPS-anaplastic-acute-neuroblastoma0
C115-pituitary-Neural-caudate-putamen-amygdala-medulla-hippocampus0
C116-myeloma-xeroderma-tonsil-CD19-spleen-lymph-trachea0
C117-serous-clear-kidney-neuroectodermal-mesothelioma-endometrial-Intestinal0
C118-cerebellum-parietal-occipital-medial-middle-frontal-insula0
C119-CD4-CD8-Natural-Neutrophils-CD14-Peripheral-CD190
C12-Mast-Basophils-immature-chorionic-mature-CD14-Eosinophils0
C120-immature-salivary-tongue-skin-cervical-CD14-CD340
C121-NK-Natural-CD8-CD4-anaplastic-chronic-B0
C122-chronic-Reticulocytes-skeletal-leukemia-acute-colon-Tracheal0
C123-CD19-Natural-CD8-CD4-CD14-Peripheral-Basophils0
C124-small-temporal-duodenum-colon-gall-signet-Hepatocyte0
C125-mucinous-alveolar-mesothelioma-Smooth-lung-CD14-Nucleus0
C126-gastrointestinal-argyrophil-smallcell-merkel-bile-insula-brain0
C127-maxillary-small-hepatoblastoma-hepatocellular-alveolar-colon-argyrophil0
C128-testicular-choriocarcinoma-H9-teratocarcinoma-pancreatic-iPS-HES3GFP0
C129-liver-Hepatocyte-colon-duodenum-temporal-testicular-small0
C13-Neutrophils-Eosinophils-CD14-Monocytederived-Whole-Peripheral-CD40
C130-iPS-HES3GFP-H9-teratocarcinoma-testicular-colon-Alveolar0
C131-lung-trachea-Alveolar-thyroid-umbilical-throat-skin0
C132-acute-small-Dendritic-Macrophage-CD14-Neutrophils-Monocytederived0
C133-signet-gall-small-kidney-colon-ductal-adenocarcinoma0
C134-skeletal-diaphragm-tongue-throat-Skeletal-skin-penis0
C135-neuroblastoma-retinoblastoma-carcinoid-choriocarcinoma-testicular-acute-rectum0
C136-Wilms-extraskeletal-anaplastic-rhabdomyosarcoma-cholangiocellular-nonsmall-neuroectodermal0
C137-large-ductal-melanoma-cervical-Endothelial-Smooth-chronic0
C138-diffuse-Burkitt-lymphangiectasia-lymphoma-acute-CD19-pineal0
C139-astrocytoma-skin-salivary-gall-serous-Mallassezderived-renal0
C14-Whole-blood-Reticulocytes-liver-Neutrophils-Eosinophils-spleen0
C140-Renal-Endothelial-Hepatic-Lymphatic-heart-lung-spleen0.502
C141-Hodgkin-acute-thymus-chronic-vein-CD4-B0
C142-Preadipocyte-Fibroblast-hepatic-Ewing-Adipocyte-Olfactory-Hair0
C143-Monocytederived-CD14-Macrophage-Dendritic-Basophils-CD14CD16-Osteoblast0
C144-CD4-tonsil-NK-appendix-CD8-splenic-mycosis0
C145-neuroblastoma-peripheral-neuroectodermal-neuroepithelioma-carcinoid-adult-extraskeletal0
C146-lymphangiectasia-lymphoma-gall-lymph-tonsil-gastric-transitionalcell0
C147-Neutrophils-Eosinophils-CD4-CD14-CD8-Natural-Peripheral0
C148-kidney-small-epididymis-pancreas-serous-duodenum-temporal0
C149-occipital-medial-brain-amygdala-parietal-cerebral-cerebellum0
C15-anaplastic-small-skeletal-neuroblastoma-parietal-temporal-tongue0
C150-merkel-carcinoid-nonsmall-gastrointestinal-argyrophil-pineal-small0
C151-CD14-Natural-Basophils-CD8-Eosinophils-CD4-Mast0
C152-peripheral-neuroectodermal-neuroepithelioma-neuroblastoma-testicular-carcinoid-lung0
C153-rhabdomyosarcoma-liposarcoma-pancreatic-somatostatinoma-Reticulocytes-lymphoma-testicular0
C154-adenocarcinoma-Mesenchymal-Cardiac-small-sacrococcigeal-Smooth-Prostate0
C155-pituitary-placenta-nonsmall-cervical-smallcell-choriocarcinoma-epitheloid0
C156-plasma-splenic-hereditary-B-large-xeroderma-b0
C157-testicular-H9-testis-iPS-teratocarcinoma-colon-trachea0
C158-adrenal-gastric-temporal-parietal-duodenum-caudate-putamen0
C159-choriocarcinoma-pancreatic-placenta-chorionic-testicular-bronchioalveolar-seminal0
C16-medial-amygdala-occipital-parietal-olfactory-putamen-brain0
C160-medulla-Hepatocyte-retina-corpus-liver-pineal-cerebral0
C161-mesothelioma-Mesothelial-acute-mesenchymal-extraskeletal-renal-placenta0
C162-spinal-locus-medulla-substantia-thalamus-globus-diencephalon0
C163-Skeletal-skeletal-Pericytes-Hepatic-rhabdomyosarcoma-throat-mesenchymal0
C164-signet-corpus-optic-mucinous-substantia-salivary-choriocarcinoma0
C165-epithelioid-Adipocyte-mesothelioma-myxofibrosarcoma-lung-gastric-Mesothelial0
C166-Macrophage-Monocytederived-Dendritic-adipose-lymph-CD14-lung0
C167-Basophils-Mast-Eosinophils-Neutrophils-Peripheral-Whole-CD40
C168-Mast-CD14-immature-Basophils-Eosinophils-CD34-Peripheral0
C169-hereditary-adult-gall-lymphangiectasia-chronic-b-choriocarcinoma0
C17-Mast-CD14-Monocytederived-Lymphatic-Smooth-mesenchymal-Macrophage0
C170-epitheloid-cervical-Hep2-keratoacanthoma-adult-neuroblastoma-signet0
C171-merkel-neuroblastoma-pineal-retinoblastoma-carcinoid-small-eye0
C172-chorionic-skeletal-tongue-amniotic-liver-gastrointestinal-Pericytes0.237
C173-Adipocyte-mature-skin-left-Hepatocyte-Osteoblast-adipose0
C174-CD14-Neutrophils-Smooth-mesothelioma-embryonic-Monocytederived-Eosinophils0
C175-Eosinophils-Neutrophils-CD4-Basophils-CD19-CD8-Natural0.0243
C176-Eosinophils-Neutrophils-Mast-CD14-CD4-Basophils-CD190.0555
C177-melanoma-Melanocyte-mesenchymal-retina-Mallassezderived-Gingival-squamous0
C178-spleen-liver-Hepatocyte-b-lymph-vein-thymus0
C179-CD19-Peripheral-lymphoma-blood-lymph-spleen-tonsil0
C18-CD4-CD8-thymus-Whole-Peripheral-Natural-blood0
C180-skeletal-heart-Hepatocyte-acute-occipital-hippocampus-middle0.0969
C181-liposarcoma-somatostatinoma-neuroblastoma-mesothelioma-nonsmall-small-Alveolar0
C182-renal-mature-mesothelioma-lung-Mammary-Adipocyte-acute0
C183-acute-non-CD34-diffuse-CD133-myeloma-Burkitt0
C184-somatostatinoma-smallcell-nonsmall-small-gastrointestinal-pineal-thyroid0
C185-small-adrenal-gastric-Mesenchymal-acute-HES3GFP-testis0
C186-squamous-papillotubular-large-Tracheal-oral-Small-epidermoid0
C187-migratory-immature-Dendritic-CD19-CD14-Monocytederived-Macrophage0
C188-left-heart-tongue-skeletal-Skeletal-diaphragm-throat0
C189-b-splenic-tonsil-CD19-lymph-appendix-spleen0
C19-embryonic-testis-cord-chronic-CD14-NK-mesothelioma0
C190-colon-small-rectum-duodenum-appendix-temporal-oral0
C191-leiomyoblastoma-Mast-parietal-acute-bone-neuroepithelioma-embryonic0
C192-Neutrophils-CD14-Peripheral-Eosinophils-CD8-Natural-CD40
C193-Mesenchymal-Adipocyte-mature-Cardiac-heart-CD14CD16-CD140
C194-MCF7-breast-prostate-Intestinal-diffuse-Wilms-Alveolar0
C195-Small-Gingival-Bronchial-Smooth-mesenchymal-Urothelial-Tracheal0
C196-testicular-iPS-H9-teratocarcinoma-HES3GFP-choriocarcinoma-endometrial0
C197-tongue-esophagus-tonsil-salivary-cervix-nasal-Gingival0
C198-Mesenchymal-Hair-Hepatic-Fibroblast-Smooth-tenocyte-Pericytes0.108
C199-glioblastoma-B-osteosarcoma-Fibroblast-heart-rhabdomyosarcoma-myxofibrosarcoma0
C2-Eosinophils-Neutrophils-CD14-Whole-Basophils-Peripheral-Mast0
C20-heart-left-skeletal-diaphragm-tongue-umbilical-throat0
C200-seminal-Cardiac-Smooth-Hair-submaxillary-Neutrophils-mixed-0.00358
C201-colon-small-adenocarcinoma-duodenum-temporal-signet-gall0
C202-salivary-skin-penis-tongue-uterus-cervical-immature0
C203-acute-NK-chronic-CD133-lymphoma-immature-Dendritic0
C204-Smooth-nasal-CD4-CD19-CD8-CD14-CD340
C205-mycosis-cord-hairy-xeroderma-CD4-B-b0
C206-melanoma-somatostatinoma-nonsmall-small-neuroblastoma-smallcell-pituitary0
C207-Corneal-Keratinocyte-Esophageal-Mammary-Bronchial-Urothelial-Sebocyte0
C208-skin-amniotic-papillotubular-salivary-umbilical-Alveolar-serous0
C209-acute-myelodysplastic-CD34-granulocyte-CD133-liver-spleen0
C21-cord-mycosis-hairy-xeroderma-adult-CD4-anaplastic0
C210-Burkitt-lymphoma-appendix-acute-diffuse-CD19-tonsil0
C211-small-Hepatocyte-liver-colon-temporal-duodenum-kidney0
C212-chronic-acute-Whole-Reticulocytes-leukemia-blood-CD340
C213-CD14-Natural-CD8-CD4-Basophils-Eosinophils-Peripheral0
C214-Neurons-Neural-duodenum-temporal-occipital-parietal-brain0
C215-chronic-acute-peripheral-Hepatocyte-osteosarcoma-NK-immature0
C216-osteosarcoma-Smooth-Mesenchymal-large-neuroectodermal-acute-CD340
C217-carcinoid-neuroectodermal-mature-mesodermal-colon-acute-occipital0
C218-tonsil-lymph-CD19-spleen-colon-appendix-salivary0.502
C219-nasal-Basophils-amniotic-Melanocyte-CD14-Osteoblast-duodenum0
C22-CD4-CD8-Natural-Basophils-CD14-Peripheral-CD190
C220-Adipocyte-mature-left-breast-skin-liver-adipose0.389
C221-alveolar-Osteoblast-Myoblast-mesenchymal-liposarcoma-Smooth-hepatocellular0
C222-Melanocyte-Tracheal-Neutrophils-seminal-Smooth-Hair-Chondrocyte-0.092
C223-Chondrocyte-basal-renal-Fibroblast-Smooth-spindle-Synoviocyte0
C224-clear-serous-pleomorphic-choriocarcinoma-mesothelioma-amniotic-renal0
C225-ductal-alveolar-giant-prostate-salivary-squamous-Tracheal0
C226-Corneal-Keratinocyte-Esophageal-Urothelial-Mammary-Bronchial-Tracheal0
C227-chorionic-amniotic-Mesenchymal-Placental-gastric-diaphragm-tongue0
C228-colon-Intestinal-Prostate-hepatoblastoma-hepatocellular-testis-adult0
C229-Mesenchymal-CD4-Melanocyte-acute-skeletal-left-heart0
C23-CD4-CD8-Natural-Peripheral-Basophils-CD19-CD140
C230-aorta-normal-heart-penis-osteosarcoma-basal-lung0
C231-Mesothelial-mesenchymal-mesothelioma-Fibroblast-Preadipocyte-leiomyoma-mycosis0
C232-teratocarcinoma-HES3GFP-H9-iPS-testicular-neuroblastoma-cerebellum0
C233-uterus-cervix-ovary-epididymis-colon-rectum-MCF70
C234-oral-epidermoid-malignant-cervical-ductal-lung-keratoacanthoma0
C235-Intestinal-Prostate-liver-colon-small-kidney-pancreas0
C236-CD14-Neutrophils-Monocytederived-renal-Eosinophils-testis-mesothelioma0
C237-acute-breast-testicular-hepatoblastoma-chronic-argyrophil-Bronchial0
C238-stomach-gall-breast-duodenum-temporal-MCF7-smallcell0
C239-CD4-lymphangiectasia-CD8-NK-mycosis-Renal-hairy0
C24-pineal-eye-retina-retinoblastoma-medulloblastoma-small-cerebral0
C240-Adipocyte-Preadipocyte-Osteoblast-Chondrocyte-tenocyte-Synoviocyte-mesenchymal0
C241-Reticulocytes-chronic-Tracheal-Hodgkin-Endothelial-Hair-thymus-0.342
C242-acute-Chondrocyte-myelodysplastic-granulocyte-biphenotypic-Fibroblast-stomach0
C243-Chondrocyte-trachea-Synoviocyte-mesodermal-renal-Fibroblast-Ewing0
C244-CD14-Monocytederived-Hepatocyte-heart-Neutrophils-acute-Macrophage0
C245-prostate-penis-salivary-esophagus-kidney-Neutrophils-Pancreatic0
C246-Neutrophils-Eosinophils-Whole-CD14-CD14CD16-Basophils-migratory0.269
C247-pons-locus-medulla-spinal-paracentral-medial-occipital0
C248-iPS-Aortic-Hep2-amygdala-acute-medial-Myoblast0
C249-nonsmall-small-smallcell-occipital-somatostatinoma-maxillary-medial0
C25-small-colon-temporal-duodenum-liver-Hepatocyte-gall0
C250-Mast-Neutrophils-CD14-Eosinophils-CD8-Peripheral-CD40.466
C251-gall-tonsil-trachea-CD14-salivary-throat-tongue0
C252-hepatic-Olfactory-sacrococcigeal-leiomyoma-normal-Synoviocyte-glioblastoma0.237
C253-spleen-rhabdomyosarcoma-Hepatocyte-small-uterus-liver-rectum0
C254-prostate-rhabdomyosarcoma-seminal-Fibroblast-transitionalcell-Smooth-Iris0
C255-Wilms-leiomyoblastoma-kidney-adrenal-MCF7-epithelioid-Mast0
C256-occipital-caudate-amygdala-medial-thalamus-hippocampus-medulla0
C257-pineal-insula-frontal-occipital-temporal-medial-paracentral0
C258-hepatoblastoma-hepatocellular-signet-colon-Intestinal-Prostate-gastric0
C259-Preadipocyte-Adipocyte-Fibroblast-Chondrocyte-tenocyte-normal-Ewing0
C26-Eosinophils-Neutrophils-CD14-CD14CD16-Basophils-Monocytederived-Whole0
C260-acute-chronic-Natural-NK-Basophils-biphenotypic-blood0
C261-locus-medial-parietal-pons-diencephalon-olfactory-spinal0
C262-breast-MCF7-skeletal-Reticulocytes-mucinous-hepatoblastoma-Wilms0
C263-cervical-keratoacanthoma-tongue-skin-esophagus-throat-tonsil0
C264-giant-keratoacanthoma-colon-fibrosarcoma-HES3GFP-Hep2-acute0
C265-CD4-Eosinophils-CD14-Natural-CD19-Basophils-CD80
C266-acute-chronic-leukemia-small-choriocarcinoma-hepatoma-Mast0
C267-pancreatic-placenta-choriocarcinoma-testicular-teratocarcinoma-chorionic-clear0
C268-Mallassezderived-Urothelial-Gingival-Small-Bronchial-Tracheal-Prostate0
C269-Basophils-Mast-Eosinophils-mature-CD14-chorionic-CD40
C27-pancreas-temporal-duodenum-salivary-ductus-umbilical-lung0
C270-CD4-Fibroblast-acute-iPS-Aortic-CD34-Smooth-0.0663
C271-pineal-spinal-locus-globus-medulla-thalamus-cerebellum0
C272-CD19-CD4-CD8-Whole-Peripheral-lymph-tonsil0
C273-Neutrophils-CD14-Eosinophils-Monocytederived-CD4-Natural-Mast0
C274-CD14-Mast-immature-Basophils-mature-vagina-Hepatocyte0
C275-pons-medulla-cerebellum-locus-thalamus-diencephalon-spinal0
C276-mesothelioma-kidney-renal-small-clear-cerebellum-Renal0
C277-mesothelioma-epithelioid-thyroid-extraskeletal-alveolar-glioblastoma-adenocarcinoma0
C278-amygdala-hippocampus-insula-medial-putamen-temporal-olfactory0
C279-parietal-cerebellum-occipital-temporal-middle-duodenum-medial0
C28-thymus-acute-vein-Hodgkin-chronic-throat-Dendritic0
C280-Mast-Natural-CD19-CD8-Eosinophils-CD34-CD40
C281-Hodgkin-Reticulocytes-chronic-NK-acute-retinoblastoma-small-0.514
C282-acute-B-tonsil-CD19-submaxillary-lymph-throat0
C283-tenocyte-Chondrocyte-mesenchymal-Macrophage-pleomorphic-Synoviocyte-cholangiocellular0
C284-parietal-occipital-medial-temporal-olfactory-locus-hippocampus0
C285-cervical-Hep2-small-colon-temporal-duodenum-bronchogenic0
C286-cerebellum-occipital-optic-parietal-globus-caudate-medial0.389
C287-Hepatocyte-Chondrocyte-Adipocyte-Synoviocyte-liver-tenocyte-mesenchymal0
C288-Chondrocyte-Renal-Pericytes-Fibroblast-aorta-Smooth-Meningeal0.237
C289-chorionic-skeletal-heart-Mast-amniotic-granulosa-left0
C29-mature-adipose-Adipocyte-breast-Lymphatic-vein-heart0.237
C290-Eosinophils-CD14-Basophils-Mast-CD4-CD8-immature0
C291-spinal-substantia-retina-medulla-tongue-skeletal-trachea0
C292-Mesenchymal-skin-umbilical-Adipocyte-mesenchymal-Chondrocyte-skeletal0
C293-CD14-CD14CD16-Basophils-Peripheral-immature-Eosinophils-CD340
C294-CD14-Macrophage-Monocytederived-CD14CD16-Neutrophils-Basophils-Peripheral0.239
C295-Fibroblast-Smooth-Myoblast-Chondrocyte-hepatic-Synoviocyte-Preadipocyte0
C296-gall-small-mesothelioma-acute-bronchioalveolar-epidermoid-mixed0
C297-Eosinophils-CD4-Basophils-Natural-Neutrophils-CD8-Peripheral0
C298-small-optic-substantia-thalamus-diencephalon-globus-occipital0
C299-CD14CD16-Eosinophils-Neutrophils-CD14-Whole-Basophils-blood0
C3-occipital-temporal-insula-medial-postcentral-frontal-amygdala0
C30-thyroid-throat-mesothelioma-mucinous-trachea-chorionic-mesenchymal0
C300-CD4-CD8-NK-Natural-blood-mycosis-Basophils0
C301-Smooth-mesenchymal-Endothelial-Hepatic-basal-hepatic-chorionic0
C302-acute-peripheral-Neutrophils-NK-myelodysplastic-CD34-carcinoid0
C303-CD14-Basophils-Peripheral-Eosinophils-CD14CD16-Neutrophils-Whole0
C305-heart-skeletal-smooth-left-bladder-penis-esophagus0
C31-skeletal-tongue-diaphragm-throat-penis-skin-trachea0
C32-middle-occipital-parietal-hippocampus-amygdala-medial-olfactory0
C33-Reticulocytes-liver-Whole-blood-chronic-acute-spleen0
C34-placenta-chorionic-choriocarcinoma-mesothelioma-Wilms-Smooth-bile0
C35-caudate-putamen-diencephalon-nucleus-globus-thalamus-insula0
C36-B-b-splenic-plasma-xeroderma-adrenal-Burkitt0
C37-salivary-submaxillary-parotid-seminal-tongue-ductus-trachea0
C38-extraskeletal-rhabdomyosarcoma-adrenal-rectal-mesothelioma-lung-Wilms0
C39-epididymis-ductus-seminal-testis-acute-thyroid-CD1330
C4-optic-corpus-substantia-medulla-spinal-thalamus-globus0
C40-eye-retina-Lens-pineal-tongue-retinoblastoma-small0
C41-retina-eye-medulla-Retinal-medulloblastoma-kidney-pineal0
C42-small-lung-maxillary-pharyngeal-Mesenchymal-Wilms-colon0
C43-ductus-seminal-duodenum-temporal-gall-prostate-bladder0
C44-Dendritic-CD19-CD133-granulocyte-acute-thymus-immature0
C45-testicular-choriocarcinoma-H9-teratocarcinoma-Wilms-pancreatic-iPS0
C46-acute-Hodgkin-thymus-CD8-chronic-CD4-merkel0
C47-CD19-Burkitt-acute-xeroderma-tonsil-lymphoma-appendix0
C48-smooth-bladder-esophagus-colon-penis-aorta-uterus0
C49-H9-iPS-testicular-HES3GFP-teratocarcinoma-hepatoblastoma-choriocarcinoma0
C5-Hepatocyte-liver-hepatocellular-Intestinal-kidney-small-pancreas0
C50-chorionic-placenta-amniotic-migratory-smallcell-chronic-choriocarcinoma0
C51-kidney-mesothelioma-renal-signet-gall-lung-pancreas0
C52-adult-NK-chronic-cord-testis-embryonic-myeloma0
C53-medulloblastoma-pineal-retinoblastoma-small-retina-eye-pituitary0
C54-Dendritic-Macrophage-Monocytederived-CD14-leiomyoma-adipose-immature0
C55-hepatocellular-Intestinal-liver-Prostate-fibrosarcoma-Hepatocyte-hepatoblastoma0
C56-heart-left-umbilical-skeletal-penis-diaphragm-tongue0
C57-Neutrophils-Eosinophils-Whole-CD4-CD8-CD19-Natural0
C58-Melanocyte-melanoma-retina-Retinal-eye-migratory-H90
C59-Smooth-Fibroblast-Mesenchymal-tenocyte-Ewing-skin-hepatic0
C6-CD14-Eosinophils-Basophils-Peripheral-CD34-Natural-immature0
C60-esophagus-tonsil-throat-tongue-uterus-cervix-cervical0
C61-migratory-Dendritic-immature-Macrophage-xeroderma-cord-b0
C62-Burkitt-tonsil-CD19-submaxillary-spleen-salivary-lymph0
C63-neuroectodermal-neuroblastoma-carcinoid-peripheral-chronic-neuroepithelioma-acute0
C64-Mast-chronic-acute-immature-chorionic-Basophils-Dendritic0
C65-CD14-Eosinophils-Monocytederived-Basophils-immature-Macrophage-Neutrophils0
C66-cerebellum-middle-occipital-parietal-medial-amygdala-hippocampus0
C67-CD14-Monocytederived-Macrophage-dura-Dendritic-spleen-lung0
C68-amniotic-chorionic-Placental-salivary-placenta-tongue-mesothelioma0
C69-anaplastic-CD14-cord-hairy-mycosis-adult-NK0
C7-CD14-Eosinophils-Neutrophils-Smooth-Basophils-Macrophage-Mast0
C70-parotid-submaxillary-salivary-throat-trachea-aorta-tongue0
C71-Monocytederived-Macrophage-CD14-Dendritic-Osteoblast-leiomyoma-Prostate0
C72-skeletal-tongue-throat-heart-diaphragm-penis-left0
C73-pineal-eye-retina-caudate-cerebellum-left-parietal0
C74-splenic-B-b-plasma-xeroderma-lymphoma-hairy0
C75-Eosinophils-Natural-CD8-Basophils-CD14-CD4-Peripheral0
C76-argyrophil-gastrointestinal-temporal-duodenum-neuroblastoma-merkel-smallcell0
C77-Saos2-osteosarcoma-Neutrophils-Natural-Chondrocyte-Basophils-CD80
C78-lymphoma-plasma-tonsil-appendix-lymph-seminal-trachea0
C79-chorionic-Chondrocyte-Cardiac-Smooth-Fibroblast-Preadipocyte-Mesenchymal0
C8-Natural-CD8-Basophils-CD4-CD14-Peripheral-CD340
C80-immature-migratory-CD14-Dendritic-splenic-cord-Mast0
C81-trachea-salivary-throat-aorta-eye-submaxillary-parotid0
C82-Basophils-CD14-Eosinophils-Natural-Peripheral-immature-CD340
C83-choriocarcinoma-pancreatic-placenta-chorionic-HES3GFP-testicular-amniotic0
C84-choriocarcinoma-pancreatic-Wilms-Mallassezderived-thymus-salivary-colon0
C85-neuroblastoma-carcinoid-retinoblastoma-small-pineal-rhabdomyosarcoma-medulloblastoma0
C86-colon-carcinoid-small-neuroectodermal-giant-large-neuroepithelioma0
C87-retinoblastoma-left-nonsmall-heart-small-diaphragm-bronchogenic0
C88-Melanocyte-melanoma-Macrophage-Mesenchymal-migratory-Dendritic-Monocytederived0
C89-small-retinoblastoma-medulloblastoma-iPS-acantholytic-eye-bronchogenic0
C9-skeletal-diaphragm-tongue-throat-penis-heart-left0
C90-neuroectodermal-peripheral-neuroepithelioma-neuroblastoma-carcinoid-parietal-putamen0
C91-Fibroblast-Smooth-mesenchymal-Mesothelial-Small-Preadipocyte-Hair0
C92-CD14CD16-CD14-Eosinophils-Basophils-Neutrophils-Macrophage-Whole0
C93-chronic-acute-leukemia-acantholytic-medulloblastoma-testis-papillotubular0
C94-smallcell-adrenal-lung-nonsmall-small-somatostatinoma-teratocarcinoma0
C95-lung-aorta-trachea-penis-Alveolar-throat-endometrioid0
C96-non-acute-tonsil-spleen-Burkitt-lymphoma-appendix0
C97-small-smallcell-gastrointestinal-argyrophil-putamen-duodenum-brain0
C98-CD8-Natural-Basophils-blood-CD4-Peripheral-Whole0
C99-hairy-mycosis-submaxillary-salivary-cord-kidney-parotid0



Repeat families with enriched expression in this sample<b>Summary:</b>Ranked list of repeat family expression in this sample relative tothe median expression in the FANTOM5 collection is shown. Value is log10transformed.<br><b>Analyst:</b>NA<br><br>link to dataset.<br>data



TFBS(DNA)motifs over-represented in proximal region of promoters active in this sample

JASPAR motifs<b>Summary:</b>Association of JASPAR motif to the promoter expression in thissample. Pearson's correlation between the number of TFBSs estimated byusing the position-weight matrix for each promoter and its expression isexpressed as Z-score by taking the ones based on random position-weightmatrix, and the tail probability of the normal distribution correspondingto the Z-score is taken as the resulting P-value. Lower P-value indicatesmore (non-random) association of the motif to promoter expression<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11792

Jaspar motifP-value
MA0002.20.0339
MA0003.10.508
MA0004.10.742
MA0006.10.39
MA0007.10.78
MA0009.10.03
MA0014.10.871
MA0017.10.725
MA0018.20.329
MA0019.10.0252
MA0024.10.023
MA0025.10.921
MA0027.10.606
MA0028.11.49288e-5
MA0029.10.99
MA0030.17.15115e-4
MA0031.10.00439
MA0035.20.693
MA0038.10.801
MA0039.20.368
MA0040.10.623
MA0041.10.152
MA0042.10.22
MA0043.10.971
MA0046.10.344
MA0047.20.0149
MA0048.10.138
MA0050.10.751
MA0051.10.713
MA0052.10.00128
MA0055.10.0142
MA0057.10.813
MA0058.10.594
MA0059.10.0412
MA0060.10.459
MA0061.10.00725
MA0062.24.77824e-8
MA0065.20.453
MA0066.10.172
MA0067.10.505
MA0068.15.12863e-5
MA0069.10.543
MA0070.10.744
MA0071.10.501
MA0072.10.487
MA0073.10.979
MA0074.10.502
MA0076.16.88335e-8
MA0077.10.337
MA0078.10.32
MA0079.20.218
MA0080.20.819
MA0081.10.37
MA0083.10.00639
MA0084.10.976
MA0087.10.445
MA0088.10.014
MA0090.10.0605
MA0091.10.689
MA0092.10.797
MA0093.10.747
MA0099.21.67331e-6
MA0100.10.109
MA0101.10.167
MA0102.20.0192
MA0103.10.227
MA0104.20.0235
MA0105.18.87908e-7
MA0106.10.0977
MA0107.10.345
MA0108.28.30402e-18
MA0111.10.546
MA0112.20.0678
MA0113.10.491
MA0114.10.912
MA0115.10.877
MA0116.11.95757e-4
MA0117.10.238
MA0119.10.484
MA0122.10.435
MA0124.10.88
MA0125.10.904
MA0131.10.195
MA0135.10.0528
MA0136.10.0394
MA0137.23.45748e-6
MA0138.20.745
MA0139.10.0272
MA0140.10.392
MA0141.10.0951
MA0142.10.847
MA0143.10.447
MA0144.10.0109
MA0145.10.455
MA0146.10.441
MA0147.10.01
MA0148.10.0369
MA0149.10.148
MA0150.10.0217
MA0152.10.216
MA0153.10.0866
MA0154.10.0994
MA0155.10.642
MA0156.10.0124
MA0157.10.0963
MA0159.10.258
MA0160.10.447
MA0162.10.796
MA0163.13.28526e-10
MA0164.10.528
MA0258.10.0461
MA0259.10.114



FANTOM5 phase1 novel unique motifs<b>Summary:</b>Association of the 169 novel and unique motifs discovered in FANTOM5 phase1 in this sample. Among the de-novo motifs discovered by DMF, HOMER,ChIPMunk, and ScanAll, only novel motifs are selected after comparison with known motif sets, and their clustering based on MACRO-APE resulted in169 novel and unique motifs. Their association to the promoter expression is evaluated in the same way to the JASPAR motif above<br><b>Analyst:</b> Michiel de Hoon <br><br><br>link to dataset.<br>data

library id: CNhs11792

Novel motifP-value
10.012
100.0449
1000.244
1010.373
1020.456
1030.154
1040.615
1050.745
1060.694
1070.319
1080.941
1090.0715
110.1
1100.0971
1110.0313
1120.751
1130.35
1140.00368
1150.0676
1160.593
1170.0069
1180.076
1190.829
120.673
1200.189
1210.741
1220.832
1230.0081
1240.24
1250.251
1260.475
1270.924
1280.868
1290.378
130.0625
1300.812
1310.593
1320.0743
1330.643
1340.882
1350.192
1360.742
1370.715
1380.232
1390.563
140.649
1400.0571
1410.447
1420.304
1430.00247
1440.815
1450.663
1460.984
1470.333
1480.275
1490.46
150.0587
1500.565
1510.789
1520.167
1530.733
1540.24
1550.99
1560.737
1570.342
1580.253
1590.734
160.11
1600.863
1610.354
1620.49
1630.779
1640.0584
1650.66
1660.967
1670.027
1680.734
1690.605
170.506
180.0878
190.774
20.29
200.197
210.445
220.699
230.202
240.391
250.321
260.116
270.659
280.526
290.0128
30.0708
300.0314
310.917
320.307
330.3
340.27
350.0448
360.041
370.173
380.824
390.29
40.343
400.157
410.452
420.112
430.262
440.549
450.237
460.0799
470.0286
480.114
490.0765
50.807
500.741
510.513
520.194
530.665
540.992
550.633
560.707
570.103
580.514
590.759
60.978
600.595
610.214
620.362
630.601
640.258
650.913
660.0953
670.691
680.334
690.438
70.405
700.00571
710.0182
720.938
730.583
740.781
750.0259
760.0358
770.247
780.31
790.884
80.418
800.326
810.337
820.301
830.496
840.67
850.467
860.758
870.374
880.693
890.222
90.306
900.0334
910.488
920.625
930.0165
940.077
950.0865
960.42
970.622
980.048
990.414



de novo motifs identified by HOMER in promoters active in this sample<b>Summary:</b>The result of HOMER in this sample is shown.<br><b>Analyst:</b>NA <br> library id: CNhs11792


FANTOM5 (FF) ontology

Direct parent terms


Ancestor terms (non development)<b>Summary:</b>Connected ontology terms with is_a, part_of or located_in relationship <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source data<br>data

UBERON: Anatomy
0000468 (multi-cellular organism)
0007023 (adult organism)
0000310 (breast)
0002100 (trunk)
0000479 (tissue)
0000475 (organism subdivision)
0000061 (anatomical structure)
0000465 (material anatomical entity)
0001062 (anatomical entity)
0009569 (subdivision of trunk)
0001443 (chest)
0000915 (thoracic segment of trunk)

FF: FANTOM5
0000102 (sample by type)
0000210 (human sample)
0000101 (sample by species)
0000001 (sample)
0000998 (adult tissue sample)
0000004 (tissue sample)
0010080 (human breast - adult sample)

Ancestor terms (development)<b>Summary:</b>Connected ontology terms with develops_from, derives_from or preceded_by relationship <br><b>Analyst:</b> Hideya Kawaji <br><br>link to source data<br>data
NA

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