FFCP PHASE1:Mm9::chr2:167906524..167906535,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(4 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=58220 | |EntrezGene=58220 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1331 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JK83 | |UniProt=Q9JK83 | ||
|association_with_transcript=20bp_to_ENSMUST00000052125,NM_021409,uc008oao.2_5end | |association_with_transcript=20bp_to_ENSMUST00000052125,NM_021409,uc008oao.2_5end | ||
|cluster_id=chr2:167906524..167906535,+ | |||
|description=CAGE_peak_4_at_Pard6b_5end | |description=CAGE_peak_4_at_Pard6b_5end | ||
|id=chr2:167906524..167906535,+ | |id=chr2:167906524..167906535,+ | ||
|ontology_enrichment_celltype=CL:0002563!1.79e-07!9;CL:0002251!1.79e-07!9 | |ontology_enrichment_celltype=CL:0002563!1.79e-07!9;CL:0002251!1.79e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0002563,1.23e-12,9;CL:0002251,1.23e-12,9;CL:0002076,2.81e-12,15;CL:0000066,9.85e-12,25;CL:0000223,6.17e-10,20;CL:0000239,2.21e-09,6;CL:0000677,2.21e-09,6;CL:0000584,2.21e-09,6;CL:0000075,7.71e-08,7 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005409!5.65e-12!59;UBERON:0000160!1.09e-11!43;UBERON:0004119!1.67e-11!130;UBERON:0000925!1.67e-11!130;UBERON:0006595!1.67e-11!130;UBERON:0001007!4.28e-11!128;UBERON:0001555!4.28e-11!128;UBERON:0007026!4.28e-11!128;UBERON:0004921!2.33e-10!126;UBERON:0004185!2.33e-10!126;UBERON:0000344!3.55e-10!15;UBERON:0001242!2.35e-09!13;UBERON:0000060!2.35e-09!13;UBERON:0001262!2.35e-09!13;UBERON:0004786!2.35e-09!13;UBERON:0005178!6.02e-08!17;UBERON:0005181!6.02e-08!17;UBERON:0002224!6.02e-08!17;UBERON:0000915!6.02e-08!17;UBERON:0008947!6.02e-08!17;UBERON:0003258!6.02e-08!17;UBERON:0003350!1.79e-07!9;UBERON:0004808!1.79e-07!9;UBERON:0001277!1.79e-07!9;UBERON:0000464!2.65e-07!57 | |ontology_enrichment_uberon=UBERON:0005409!5.65e-12!59;UBERON:0000160!1.09e-11!43;UBERON:0004119!1.67e-11!130;UBERON:0000925!1.67e-11!130;UBERON:0006595!1.67e-11!130;UBERON:0001007!4.28e-11!128;UBERON:0001555!4.28e-11!128;UBERON:0007026!4.28e-11!128;UBERON:0004921!2.33e-10!126;UBERON:0004185!2.33e-10!126;UBERON:0000344!3.55e-10!15;UBERON:0001242!2.35e-09!13;UBERON:0000060!2.35e-09!13;UBERON:0001262!2.35e-09!13;UBERON:0004786!2.35e-09!13;UBERON:0005178!6.02e-08!17;UBERON:0005181!6.02e-08!17;UBERON:0002224!6.02e-08!17;UBERON:0000915!6.02e-08!17;UBERON:0008947!6.02e-08!17;UBERON:0003258!6.02e-08!17;UBERON:0003350!1.79e-07!9;UBERON:0004808!1.79e-07!9;UBERON:0001277!1.79e-07!9;UBERON:0000464!2.65e-07!57 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000344,1.09e-17,15;UBERON:0001242,3.74e-16,13;UBERON:0001262,3.74e-16,13;UBERON:0004786,3.74e-16,13;UBERON:0003350,1.23e-12,9;UBERON:0004808,1.23e-12,9;UBERON:0001277,1.23e-12,9;UBERON:0004923,1.74e-12,24;UBERON:0000160,2.03e-12,31;UBERON:0005409,1.03e-10,47;UBERON:0005178,2.34e-10,17;UBERON:0005181,2.34e-10,17;UBERON:0002224,2.34e-10,17;UBERON:0000915,2.34e-10,17;UBERON:0008947,2.34e-10,17;UBERON:0003258,2.34e-10,17;UBERON:0004119,2.76e-10,118;UBERON:0000925,2.76e-10,118;UBERON:0006595,2.76e-10,118;UBERON:0001007,6.89e-10,116;UBERON:0001555,6.89e-10,116;UBERON:0007026,6.89e-10,116;UBERON:0000485,7.45e-10,11;UBERON:0004921,6.61e-09,114;UBERON:0002048,3.55e-07,14;UBERON:0000117,3.55e-07,14;UBERON:0000171,3.55e-07,14;UBERON:0000170,3.55e-07,14;UBERON:0005597,3.55e-07,14;UBERON:0000118,3.55e-07,14 | |||
|phase1_expression=0,14.6569671208532,19.1099680543605,13.9133537201142,18.0322462780685,6.71517087647559,4.90586545250604,0.129123323441576,0.140788722151667,0.468129052643987,0.171217968225505,0.0797721589953364,0,0.0874204024189974,0,0,0,0,0,0,1.53077922271926,0.0992909512008853,0,2.07990149631429,1.14704640533585,12.6331032105304,6.03066794622705,6.46413698057667,1.52018735565099,1.51218077855958,2.88249663851896,0,0,0,4.33277429626912,1.99481574430191,5.10423390655923,0,0,0,0,0,0,0,0,0,0,1.09012578190223,0.439372365468944,0.777719596297134,0,1.43752564364972,0,0,0,0,0.85960031981627,1.54701627683233,0.404632921719196,0,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0.311068836925433,0.270011876663381,0.210324961351382,0,0,0.489963196859816,0.287536413054709,0,0,0,0,0.395658863190582,0.182975287204819,0,0,0,0,0,0.142371680799103,0.372798891650601,0,0,6.66688324013859,0,0.679971333707751,0,0,0.448026887097336,0.280888840263504,0,0,0,0.985903938436763,0,0,0,5.19578498426914,5.06719730950197,8.59391556525132,1.1418387971906,0,0.148442139064825,0,0.608930956624282,0,0.150722640552623,0.117588707135705,0,4.44950941921873,0.144599356919912,0,0,0,0,0,0.585561594023094,0.209446706813455,1.02182822083437,0,0,0,0,0,0.125654352112864,0,0,0.20778804455956,0.324482526135515,1.01839363850316,0.248813941220186,0,1.26265113531884,0.130120442962704,0,0,0.150704817835715,0.544291993210623,0.384341160854549,0.655912071918102,1.03481348295606,0.215567992932842,0,0,0.219195732427575,0,0,0,0.398068533636986,0,0,0,0.207125772535502,0,0.540186184383045,0.473489471170421,0.393528463494808,0.617068451549513,0.697601834251224,0.268273401399619,0.467061369468678,0.16455984991348,0,0.162137619091711,0.146199987425332,0,0.134206418760372,0,0.102904612379284,1.65209391491899,0.528901133327089,0.426576501070468,1.16118335930219,0.644337306610467,0.605050573870028,0.889512175379481,0.951128130562796,0.949058123089023,1.31759163779209,1.75934646160189,1.1937388322469,1.16978452271472,0.898819408654221,0.432276099749388,1.1948476395262,0.569003702859245,0.913988100877831,2.25415471346161,1.62921062276251,1.35766741017338,1.47285221769669,1.45444035385792,0.590440591918409,1.09899109488962,0.863780147452604,0.296452627087149,0.500535317148282,0.196558995113203,0,0.608580364165509,0.241177159752417,0.50925170356284,0.575392274901621,0.162135226775035,0.549122826376163,1.43768206527355,0,0.312037673114561,0.505157755894224,0.358794827043824,0,3.14080423283228,0.568474235311454,0.651859905768103,0.339490171550376,0.234690248288502,1.34005005953453,2.61848004974615,10.7323506321789,1.57635144106191,2.43611158613652,1.2756381492599,1.63863314715738,1.72684981865896,4.05017364028232,0,0,0,0.827810238914197,0.160550589987792,0,0.163934945376675,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0.425820255624806,0.712262414669021,1.30309567482861,0.659880491890142,0,0.728341908464944,0.604647113929502,0.377210159511796,1.18120757152309,0.922305443831782,1.03371317267288,1.09060118843252,0.712994756769443,1.58018378967908,0,0,0,0,0.129358683782755,0,0,0.356737635204141,0,0,0.23467170806371,2.33015277950202,0,1.97863503529776,0.645857706783622,0.72375509913787,2.86493625607528,4.43180429311665,1.45740418314925,0,0,0.206386867963223,0.370389054739423,0,0,0,0,0,0,0.954670618015114,0.474503990371703,1.01659733563424,0.540026704109006,1.67270636811575,1.52853794622324,0.809186078308924,0.991841468704031,2.09404753587224,1.94422459937689,0,0.56369293868419,1.19613236835183,0.330916980914195,0.777804753376191,0.516639293910924,0.675824501963113,1.05621514781179,2.47388331203505,1.78260885523708,0.724752362478018,0.288030006257865,0,0.202725215290164,0,0,0.358053391334963,0.198681354781265,0.120195449519969,0.147689527174577,0,0,0,0.0974578807397524,0.192423683280659,0,1.36038230169127,7.32553646134413,1.25599399253266,2.85403847818933,0.19318959403219,0.375364950902364,1.09890974560359,7.28852488868824,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.31136204275253,0,0.341467211508268,0.243106717068294,0.419226325255965,0.183843508450014,0.44449345560323,0.618105171716683,0.64183841918363,0.758091635291392,0.50695859978048,0.188626341386076,0.0936415074698824,0.320125762024346,0.402048282689293,0,0.695305955669133,0.578727661391115,0,0.588795680537589,0,0.177475806159338,0,0.436039249896986,0.376437521661322,0.676916863133412,0.182927972872773,0.526139422875686,0.271608227691724,0,0.118635018124174,0.29551344712669,0,0.154936841185966,0.385813221962283,0.749431733813838,0.701794825336225,0.644613162144895,0.191288332068843,0.220591419119515,0 | |phase1_expression=0,14.6569671208532,19.1099680543605,13.9133537201142,18.0322462780685,6.71517087647559,4.90586545250604,0.129123323441576,0.140788722151667,0.468129052643987,0.171217968225505,0.0797721589953364,0,0.0874204024189974,0,0,0,0,0,0,1.53077922271926,0.0992909512008853,0,2.07990149631429,1.14704640533585,12.6331032105304,6.03066794622705,6.46413698057667,1.52018735565099,1.51218077855958,2.88249663851896,0,0,0,4.33277429626912,1.99481574430191,5.10423390655923,0,0,0,0,0,0,0,0,0,0,1.09012578190223,0.439372365468944,0.777719596297134,0,1.43752564364972,0,0,0,0,0.85960031981627,1.54701627683233,0.404632921719196,0,0,0,0,0,0,0,0.299600110518405,0.384218305321555,0.311068836925433,0.270011876663381,0.210324961351382,0,0,0.489963196859816,0.287536413054709,0,0,0,0,0.395658863190582,0.182975287204819,0,0,0,0,0,0.142371680799103,0.372798891650601,0,0,6.66688324013859,0,0.679971333707751,0,0,0.448026887097336,0.280888840263504,0,0,0,0.985903938436763,0,0,0,5.19578498426914,5.06719730950197,8.59391556525132,1.1418387971906,0,0.148442139064825,0,0.608930956624282,0,0.150722640552623,0.117588707135705,0,4.44950941921873,0.144599356919912,0,0,0,0,0,0.585561594023094,0.209446706813455,1.02182822083437,0,0,0,0,0,0.125654352112864,0,0,0.20778804455956,0.324482526135515,1.01839363850316,0.248813941220186,0,1.26265113531884,0.130120442962704,0,0,0.150704817835715,0.544291993210623,0.384341160854549,0.655912071918102,1.03481348295606,0.215567992932842,0,0,0.219195732427575,0,0,0,0.398068533636986,0,0,0,0.207125772535502,0,0.540186184383045,0.473489471170421,0.393528463494808,0.617068451549513,0.697601834251224,0.268273401399619,0.467061369468678,0.16455984991348,0,0.162137619091711,0.146199987425332,0,0.134206418760372,0,0.102904612379284,1.65209391491899,0.528901133327089,0.426576501070468,1.16118335930219,0.644337306610467,0.605050573870028,0.889512175379481,0.951128130562796,0.949058123089023,1.31759163779209,1.75934646160189,1.1937388322469,1.16978452271472,0.898819408654221,0.432276099749388,1.1948476395262,0.569003702859245,0.913988100877831,2.25415471346161,1.62921062276251,1.35766741017338,1.47285221769669,1.45444035385792,0.590440591918409,1.09899109488962,0.863780147452604,0.296452627087149,0.500535317148282,0.196558995113203,0,0.608580364165509,0.241177159752417,0.50925170356284,0.575392274901621,0.162135226775035,0.549122826376163,1.43768206527355,0,0.312037673114561,0.505157755894224,0.358794827043824,0,3.14080423283228,0.568474235311454,0.651859905768103,0.339490171550376,0.234690248288502,1.34005005953453,2.61848004974615,10.7323506321789,1.57635144106191,2.43611158613652,1.2756381492599,1.63863314715738,1.72684981865896,4.05017364028232,0,0,0,0.827810238914197,0.160550589987792,0,0.163934945376675,0,0,0,0,0,0.222798674082394,0,0,0,0,0,0.425820255624806,0.712262414669021,1.30309567482861,0.659880491890142,0,0.728341908464944,0.604647113929502,0.377210159511796,1.18120757152309,0.922305443831782,1.03371317267288,1.09060118843252,0.712994756769443,1.58018378967908,0,0,0,0,0.129358683782755,0,0,0.356737635204141,0,0,0.23467170806371,2.33015277950202,0,1.97863503529776,0.645857706783622,0.72375509913787,2.86493625607528,4.43180429311665,1.45740418314925,0,0,0.206386867963223,0.370389054739423,0,0,0,0,0,0,0.954670618015114,0.474503990371703,1.01659733563424,0.540026704109006,1.67270636811575,1.52853794622324,0.809186078308924,0.991841468704031,2.09404753587224,1.94422459937689,0,0.56369293868419,1.19613236835183,0.330916980914195,0.777804753376191,0.516639293910924,0.675824501963113,1.05621514781179,2.47388331203505,1.78260885523708,0.724752362478018,0.288030006257865,0,0.202725215290164,0,0,0.358053391334963,0.198681354781265,0.120195449519969,0.147689527174577,0,0,0,0.0974578807397524,0.192423683280659,0,1.36038230169127,7.32553646134413,1.25599399253266,2.85403847818933,0.19318959403219,0.375364950902364,1.09890974560359,7.28852488868824,0.501572104035363,0,0,0,0,0,0,0,0,0,0,0.31136204275253,0,0.341467211508268,0.243106717068294,0.419226325255965,0.183843508450014,0.44449345560323,0.618105171716683,0.64183841918363,0.758091635291392,0.50695859978048,0.188626341386076,0.0936415074698824,0.320125762024346,0.402048282689293,0,0.695305955669133,0.578727661391115,0,0.588795680537589,0,0.177475806159338,0,0.436039249896986,0.376437521661322,0.676916863133412,0.182927972872773,0.526139422875686,0.271608227691724,0,0.118635018124174,0.29551344712669,0,0.154936841185966,0.385813221962283,0.749431733813838,0.701794825336225,0.644613162144895,0.191288332068843,0.220591419119515,0 | ||
|short_description=p4@Pard6b | |short_description=p4@Pard6b | ||
}} | }} |
Latest revision as of 05:18, 26 September 2015
Short description: | p4@Pard6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Pard6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1331 |
Association with transcript: | 20bp_to_ENSMUST00000052125, NM_021409, uc008oao.2_5end |
EntrezGene: | Pard6b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
intestinal epithelial cell | 1.23e-12 | 9 |
epithelial cell of alimentary canal | 1.23e-12 | 9 |
endo-epithelial cell | 2.81e-12 | 15 |
epithelial cell | 9.85e-12 | 25 |
endodermal cell | 6.17e-10 | 20 |
brush border epithelial cell | 2.21e-09 | 6 |
gut absorptive cell | 2.21e-09 | 6 |
enterocyte | 2.21e-09 | 6 |
columnar/cuboidal epithelial cell | 7.71e-08 | 7 |
Ontology term | p-value | n |
---|---|---|
mucosa | 1.09e-17 | 15 |
intestinal mucosa | 3.74e-16 | 13 |
wall of intestine | 3.74e-16 | 13 |
gastrointestinal system mucosa | 3.74e-16 | 13 |
epithelium of mucosa | 1.23e-12 | 9 |
gastrointestinal system epithelium | 1.23e-12 | 9 |
intestinal epithelium | 1.23e-12 | 9 |
organ component layer | 1.74e-12 | 24 |
intestine | 2.03e-12 | 31 |
gastrointestinal system | 1.03e-10 | 47 |
thoracic cavity element | 2.34e-10 | 17 |
thoracic segment organ | 2.34e-10 | 17 |
thoracic cavity | 2.34e-10 | 17 |
thoracic segment of trunk | 2.34e-10 | 17 |
respiratory primordium | 2.34e-10 | 17 |
endoderm of foregut | 2.34e-10 | 17 |
endoderm-derived structure | 2.76e-10 | 118 |
endoderm | 2.76e-10 | 118 |
presumptive endoderm | 2.76e-10 | 118 |
digestive system | 6.89e-10 | 116 |
digestive tract | 6.89e-10 | 116 |
primitive gut | 6.89e-10 | 116 |
simple columnar epithelium | 7.45e-10 | 11 |
subdivision of digestive tract | 6.61e-09 | 114 |
lung | 3.55e-07 | 14 |
respiratory tube | 3.55e-07 | 14 |
respiration organ | 3.55e-07 | 14 |
pair of lungs | 3.55e-07 | 14 |
lung primordium | 3.55e-07 | 14 |
lung bud | 3.55e-07 | 14 |