FFCP PHASE1:Hg19::chr13:28195229..28195261,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=222484 | |EntrezGene=222484 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=20421 | |HGNC=20421 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc001urm.1_5end | |association_with_transcript=0bp_to_uc001urm.1_5end | ||
|cluster_id=chr13:28195229..28195261,- | |||
|description=CAGE_peak_3_at_LNX2_5end | |description=CAGE_peak_3_at_LNX2_5end | ||
|id=chr13:28195229..28195261,- | |id=chr13:28195229..28195261,- | ||
|ontology_enrichment_celltype=CL:0002076!2.71e-16!43;CL:0000223!3.55e-13!59;CL:0000066!3.37e-12!254;CL:0002251!9.58e-10!21 | |ontology_enrichment_celltype=CL:0002076!2.71e-16!43;CL:0000223!3.55e-13!59;CL:0000066!3.37e-12!254;CL:0002251!9.58e-10!21 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_development_v019=UBERON:0007297;2.39e-09;2 | |||
|ontology_enrichment_disease=DOID:305!2.65e-12!106;DOID:1749!4.84e-08!14;DOID:0050687!8.57e-08!143;DOID:299!3.39e-07!25 | |||
|ontology_enrichment_disease_v019=DOID:1325;9.47e-10;7!DOID:3904;9.47e-10;7!DOID:3493;9.51e-10;2 | |||
|ontology_enrichment_disease_v019_2=DOID:3493,4.27e-10,2;DOID:1325,7.75e-10,7;DOID:3904,7.75e-10,7;DOID:305,1.27e-07,106 | |||
|ontology_enrichment_uberon=UBERON:0004119!2.05e-17!169;UBERON:0000925!2.05e-17!169;UBERON:0006595!2.05e-17!169;UBERON:0001007!3.95e-14!155;UBERON:0001555!3.95e-14!155;UBERON:0007026!3.95e-14!155;UBERON:0007023!9.65e-13!115;UBERON:0004921!3.15e-11!129;UBERON:0004185!3.15e-11!129;UBERON:0001004!2.39e-10!72;UBERON:0000161!1.11e-09!35;UBERON:0000077!1.41e-08!130;UBERON:0000166!2.17e-08!21;UBERON:0000464!3.78e-08!104;UBERON:0005911!8.36e-08!82;UBERON:0000466!1.23e-07!126;UBERON:0003135!5.40e-07!11;UBERON:0000344!7.57e-07!12 | |||
|ontology_enrichment_uberon_v019=UBERON:0004921;6.86e-14;33!UBERON:0006947;3.59e-13;3!UBERON:0004054;3.59e-13;3!UBERON:0000160;2.38e-11;17!UBERON:0005409;3.79e-11;22!UBERON:0005904;5.36e-10;4!UBERON:0002108;6.04e-09;4!UBERON:0001041;2.20e-07;14!UBERON:0001044;5.39e-07;6!UBERON:0003293;5.39e-07;6!UBERON:0003294;5.39e-07;6!UBERON:0010047;5.39e-07;6!UBERON:0003408;5.39e-07;6!UBERON:0000167;5.39e-07;6!UBERON:0001555;5.98e-07;54!UBERON:0000058;7.68e-07;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0006947,1.55e-12,3;UBERON:0004054,1.55e-12,3;UBERON:0000160,1.86e-11,17;UBERON:0005409,7.08e-10,25;UBERON:0005904,1.59e-09,4;UBERON:0002108,5.94e-09,4;UBERON:0004921,9.68e-09,118;UBERON:0004119,1.04e-08,160;UBERON:0000925,1.04e-08,160;UBERON:0006595,1.04e-08,160;UBERON:0001007,4.26e-08,145;UBERON:0001555,4.26e-08,145;UBERON:0007026,4.26e-08,145;UBERON:0001044,3.93e-07,6;UBERON:0003293,3.93e-07,6;UBERON:0003294,3.93e-07,6;UBERON:0010047,3.93e-07,6;UBERON:0000167,3.93e-07,6;UBERON:0001004,6.06e-07,74;UBERON:0005178,9.84e-07,34;UBERON:0002224,9.84e-07,34 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0.873765488520689,0.263766978228454,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0,0,0,0,0,0.919421224478927,0,0.369754010166788,0,0,0,0,0,0,0,0,0,0.145398238779565,0,0,0,0,0,0,0,0,0,0.645484683583826,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.196709770113833,0.393010762749165,0,0,0,0,0,0,0,0.221533894583621,0.270803863765016,0,0,0,0,0,0.593146252648242,0.802622484269139,0,0,0,0,0.253019692019503,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.221729397462564,0,0.261958150995425,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.872188104285069,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.966304265816484,0.818238361772504,1.14721838155602,0.487894824518382,0.795178609928912,0,0.518305275076852,0.504641701751257,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.47586126251736,0,0.98775256867763,0,0.100528972411631,0.648119116109707,0,0,0,0,0,0,0,0,0,0.858486162094873,0,0,0,0,0.671928512795438,0.850650583454319,0.358234090811393,0.871901815541886,1.15014803749563,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.099972991182057,0,0,0,0,0,0,0,0,0,0,0.394061520403854,0,0.128343036279748,0,0,0.773288812777695,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.106727557803444,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.725156697549733,0.40101294060657,0.828728900423067,0,0,0,0,0.15403067420883,0,0,0,0,0,0,0,0,0,0.254876273045038,0.831076008928724,0,0,0,0,0,0,0.618246069886334,0,0,0.574265537996172,1.30012049207304,0,0,0,0,0,0,0,0,0,0.826424576804891,0.384380134730212,2.16941611240793,0.809262246844399,0,0.31481234683064,0,0,0,0,0,0,0,0,0,0.255897791311334,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.48111056362756,1.34060455107157,0,1.22386941009813,0.43050537267123,0,0.886860307073351,1.1486170010348,0.507447609232169,0,0,0.238231775457789,0,0,0,0,0,0,1.71528151186722,0,0,0,0,0.199579371432817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.935702702041099,0,0,0,0,0.47748896947538,0,0.921482106297696,0.994147647766298,0,0,0.329607748453519,0.63337622438398,0.19924798825107,0.552567831062295,1.25966373927138,0,0.123084805461069,0,0.179736702294654,0.716084698702437,0,0.197286811273867,0,0,0,0.0927680981618513,0,0.520855522170466,1.39935999993913,0,0.910347586283997,1.77977555204936,1.18193840883968,0,0,0,0,0.723578631752448,0,0.110579259931225,0.295547618953547,0,0,0.697118721393016,0.230850775511391,0,0.23056390438806,0,0.760531603454056,0.638002319463839,0,0,0,0,0,0,0,0,0,0,0.421996129056054,1.46909527343233,0.282706142867882,0,0,3.27292988662355,6.11030144933625,0,0,0,0.067401132980677,0,0.937057782901357,0,1.76098157038881,0,1.18375320854817,1.20990716048664,0,0,0.300646838828985,0,0,0,0,0,0.284609546029793,0,1.90915712168644,0.293977192243133,0.0870592065804026,1.04836000945218,0,0,0,0,1.55182426381471,0,0.677942222341597,0,0,0.126621591911757,1.36885967914362,0.0801588202515337,0.640358984218058,0,0.864542502924636,0,0,0,0,0,0.135904206073614,0,0,0,0,0,0,0,0,0,0.229160424011684,0,0.998395002494955,0,0,0,0,0,0.0787831823072236,0.0824158583811665,0.0674035438541849,0,0,0,0,0,0.275078873194468,0.415440338029185,0,2.32140586367385,0,0.670869375198532,1.02447419488958,0.524545881349981,0,0,0.383830394638891,0.714695326373367,0,0,0,0,0,0,0,0,0,0.439656701034247,0,0.129282956361551,0,0,0,0.427149650270779,1.41483874589699,0.828478110694391,0,0,0,0,0,0,0,0,1.72759505875258,0,0,0,0,0.110929051536852,0,0,0,0,0,0,0.468334905806882,1.1593682288866,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.260994291965212,0,0,0,0,0,0,0,0,0,0.512483037175893,0,0,0.138258436151731,0,0,0,0,0,0.422624246717254,0,0,0,0,0,0.559518030877778,1.86623178009892,0,0,0,0,0,0,0,0,0,0,0,0,0,0.321146125482298,0,0,0,0,0,0.484426936895553,0,0.196295437002051,0.235939446695481,0.733714394086716,0.693153996902029,0,0,0,0.150420656698515,0.20170506870352,1.56302802246618,0.261906694481422,0.163771917510097,0.443568258651136,0.0675375846183947,0,0,0,0,0.548257766857182,0.496211178389294,0,0.638812138197976,0,0,0,0.91064876540519,0.354809480650555,0.115233987555779,0,0.0679697329768317,0.131545547125698,0,0.111231401892069,0.156986185701028,0.314231179832004,1.68163297988273,0,0,0,0.0714765441766563,0,0,0,0,0,0.17071847709395,1.38251932362818,2.58136415292167,0,0,1.27016115057279,0.4582137370881,0,0,0.335566295393377,1.86485443868962,2.8041122745922,0.647428837187895,0,0,0.485710993059139,1.16969731731053,0.198950775161368,0,1.58124514854544,0,1.35866559210006,6.94567422971502,3.93407208907123,1.41095188908457,0,0.471353094203252,0,0,0,0,0,0,0,1.2498775702396,0,0.401206833445841,0.730336388246517,1.83491713361816,0,0,0,0,4.2322147241232,0,0,0,0,0,0,0.917899467677836,0.534434810531121,1.47031839255752,0,0.151557396436479,0.535928260312357,0,0.103432995861895,1.27940389140589,0.714193294391221,0.0645889098360061,0,0,0.700118741059814,0.606351566874658,0.653150243690884,0.342233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| ||
|short_description=p3@LNX2 | |short_description=p3@LNX2 | ||
}} | }} |
Latest revision as of 23:19, 16 September 2015
Short description: | p3@LNX2 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LNX2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_uc001urm.1_5end |
EntrezGene: | LNX2 |
HGNC: | 20421 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
male genital duct | 1.55e-12 | 3 |
internal male genitalia | 1.55e-12 | 3 |
intestine | 1.86e-11 | 17 |
gastrointestinal system | 7.08e-10 | 25 |
duct of male reproductive system | 1.59e-09 | 4 |
small intestine | 5.94e-09 | 4 |
subdivision of digestive tract | 9.68e-09 | 118 |
endoderm-derived structure | 1.04e-08 | 160 |
endoderm | 1.04e-08 | 160 |
presumptive endoderm | 1.04e-08 | 160 |
digestive system | 4.26e-08 | 145 |
digestive tract | 4.26e-08 | 145 |
primitive gut | 4.26e-08 | 145 |
saliva-secreting gland | 3.93e-07 | 6 |
gland of oral region | 3.93e-07 | 6 |
gland of foregut | 3.93e-07 | 6 |
oral gland | 3.93e-07 | 6 |
oral cavity | 3.93e-07 | 6 |
respiratory system | 6.06e-07 | 74 |
thoracic cavity element | 9.84e-07 | 34 |
thoracic cavity | 9.84e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
signet ring cell adenocarcinoma | 4.27e-10 | 2 |
bronchus cancer | 7.75e-10 | 7 |
bronchogenic carcinoma | 7.75e-10 | 7 |
carcinoma | 1.27e-07 | 106 |