FFCP PHASE1:Hg19::chr12:52913727..52913740,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr12:52913727..52913740,+ | |||
|coexpression_cluster_id=C207 | |||
|description=CAGE_peak_at_chr12:52913727..52913740,+ | |description=CAGE_peak_at_chr12:52913727..52913740,+ | ||
|id=chr12:52913727..52913740,+ | |id=chr12:52913727..52913740,+ | ||
|ontology_enrichment_celltype=CL:0002076!3.84e-31!43;CL:0000223!7.10e-21!59;CL:0002368!1.56e-20!13;CL:0000066!4.46e-19!254;CL:0002251!4.18e-16!21;CL:0002159!1.81e-13!13;CL:0000244!6.55e-12!4;CL:0000731!6.55e-12!4;CL:0002202!1.15e-11!9;CL:0002632!1.15e-11!9;CL:0002328!5.79e-10!3;CL:0000076!7.96e-10!62;CL:0000068!1.13e-09!3;CL:0000069!1.13e-09!3;CL:0000307!1.13e-09!3;CL:0000377!1.13e-09!3;CL:0002166!5.43e-09!3;CL:0002621!8.40e-09!3;CL:0000240!1.52e-08!6;CL:0000311!1.52e-08!6;CL:0000079!1.52e-08!6;CL:0000237!1.52e-08!6;CL:0000036!1.52e-08!6;CL:0000357!1.52e-08!6;CL:0000114!1.52e-08!6;CL:0002077!2.11e-08!33;CL:0002327!3.11e-07!4;CL:0000575!3.39e-07!2 | |ontology_enrichment_celltype=CL:0002076!3.84e-31!43;CL:0000223!7.10e-21!59;CL:0002368!1.56e-20!13;CL:0000066!4.46e-19!254;CL:0002251!4.18e-16!21;CL:0002159!1.81e-13!13;CL:0000244!6.55e-12!4;CL:0000731!6.55e-12!4;CL:0002202!1.15e-11!9;CL:0002632!1.15e-11!9;CL:0002328!5.79e-10!3;CL:0000076!7.96e-10!62;CL:0000068!1.13e-09!3;CL:0000069!1.13e-09!3;CL:0000307!1.13e-09!3;CL:0000377!1.13e-09!3;CL:0002166!5.43e-09!3;CL:0002621!8.40e-09!3;CL:0000240!1.52e-08!6;CL:0000311!1.52e-08!6;CL:0000079!1.52e-08!6;CL:0000237!1.52e-08!6;CL:0000036!1.52e-08!6;CL:0000357!1.52e-08!6;CL:0000114!1.52e-08!6;CL:0002077!2.11e-08!33;CL:0002327!3.11e-07!4;CL:0000575!3.39e-07!2 | ||
|ontology_enrichment_celltype_v019=CL:0002368;3.03e-22;13!CL:0002202;5.80e-19;9!CL:0002632;5.80e-19;9!CL:0002159;2.72e-16;14!CL:0002328;1.39e-15;3!CL:0000307;6.31e-15;3!CL:0002076;1.52e-14;42!CL:0000240;1.29e-13;6!CL:0000311;1.29e-13;6!CL:0000079;1.29e-13;6!CL:0000237;1.29e-13;6!CL:0002327;2.47e-11;4!CL:0000575;6.88e-11;2!CL:0002077;1.36e-10;34!CL:0000312;1.16e-09;5!CL:0002623;2.04e-07;3!CL:0002577;3.28e-07;3!CL:0002166;3.54e-07;3 | |||
|ontology_enrichment_celltype_v019_2=CL:0002368,2.67e-22,13;CL:0002076,3.33e-19,42;CL:0002202,4.89e-19,9;CL:0002632,4.89e-19,9;CL:0000066,7.42e-17,253;CL:0002159,2.40e-16,14;CL:0002328,1.50e-15,3;CL:0000068,4.53e-15,3;CL:0000069,4.53e-15,3;CL:0000307,4.53e-15,3;CL:0000377,4.53e-15,3;CL:0000240,1.25e-13,6;CL:0000311,1.25e-13,6;CL:0000079,1.25e-13,6;CL:0000237,1.25e-13,6;CL:0000036,1.25e-13,6;CL:0000357,1.25e-13,6;CL:0000114,1.25e-13,6;CL:0000223,4.67e-13,58;CL:0002077,3.11e-12,34;CL:0002327,2.95e-11,4;CL:0000575,5.95e-11,2;CL:0000312,1.16e-09,5;CL:0002623,2.11e-07,3;CL:0002577,2.99e-07,3;CL:0002166,3.28e-07,3 | |||
|ontology_enrichment_development_v019=CL:0000377;6.31e-15;3!CL:0000357;1.29e-13;6!CL:0000114;1.29e-13;6!CL:0000223;2.28e-08;58 | |||
|ontology_enrichment_disease=DOID:1749!1.14e-16!14 | |ontology_enrichment_disease=DOID:1749!1.14e-16!14 | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001004!2.93e-20!72;UBERON:0000166!6.46e-16!21;UBERON:0004119!1.93e-14!169;UBERON:0000925!1.93e-14!169;UBERON:0006595!1.93e-14!169;UBERON:0000065!1.26e-13!53;UBERON:0000165!1.71e-13!28;UBERON:0000930!1.71e-13!28;UBERON:0003729!5.05e-13!5;UBERON:0007196!5.45e-12!14;UBERON:0001558!5.45e-12!14;UBERON:0000161!7.56e-12!35;UBERON:0000974!2.89e-11!10;UBERON:0006562!1.43e-10!11;UBERON:0003343!2.67e-10!4;UBERON:0004785!2.67e-10!4;UBERON:0004815!5.79e-10!3;UBERON:0002031!5.79e-10!3;UBERON:0003126!7.94e-10!7;UBERON:0001005!7.94e-10!7;UBERON:0000072!1.06e-09!46;UBERON:0000365!1.60e-09!5;UBERON:0001444!2.37e-09!48;UBERON:0001949!8.40e-09!3;UBERON:0001042!9.80e-09!10;UBERON:0009145!9.80e-09!10;UBERON:0001723!1.04e-08!3;UBERON:0001033!1.04e-08!3;UBERON:0010056!1.04e-08!3;UBERON:0003102!1.40e-08!95;UBERON:0005910!6.33e-08!6;UBERON:0005178!8.26e-08!34;UBERON:0002224!8.26e-08!34;UBERON:0002185!1.51e-07!4;UBERON:0005181!1.61e-07!35;UBERON:0000344!2.69e-07!12;UBERON:0001007!3.07e-07!155;UBERON:0001555!3.07e-07!155;UBERON:0007026!3.07e-07!155;UBERON:0001911!3.11e-07!4;UBERON:0005333!3.11e-07!4;UBERON:0008425!3.11e-07!4;UBERON:0005311!3.11e-07!4;UBERON:0001708!7.86e-07!4;UBERON:0001704!7.86e-07!4 | |||
|ontology_enrichment_uberon_v019=UBERON:0004815;1.39e-15;3!UBERON:0002031;1.39e-15;3!UBERON:0001911;2.47e-11;4!UBERON:0007196;3.96e-11;15!UBERON:0001558;3.96e-11;15!UBERON:0002185;1.57e-09;5!UBERON:0005178;7.71e-08;34!UBERON:0002224;7.71e-08;34!UBERON:0005181;2.25e-07;35!UBERON:0001043;3.89e-07;3!UBERON:0001723;4.61e-07;3!UBERON:0001033;4.61e-07;3!UBERON:0000485;6.43e-07;7 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004815,1.50e-15,3;UBERON:0002031,1.50e-15,3;UBERON:0001911,2.95e-11,4;UBERON:0005333,2.95e-11,4;UBERON:0008425,2.95e-11,4;UBERON:0005311,2.95e-11,4;UBERON:0007196,3.58e-11,15;UBERON:0001558,3.58e-11,15;UBERON:0002185,1.64e-09,5;UBERON:0004119,3.24e-08,160;UBERON:0000925,3.24e-08,160;UBERON:0006595,3.24e-08,160;UBERON:0001004,4.70e-08,74;UBERON:0005178,7.33e-08,34;UBERON:0002224,7.33e-08,34;UBERON:0003102,1.25e-07,99;UBERON:0005181,1.33e-07,35;UBERON:0001043,2.99e-07,3;UBERON:0009143,2.99e-07,3;UBERON:0001723,5.22e-07,3;UBERON:0001033,5.22e-07,3;UBERON:0010056,5.22e-07,3;UBERON:0000065,6.83e-07,54;UBERON:0005157,8.75e-07,47 | |||
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| ||
|short_description=p@chr12:52913727..52913740,+ | |short_description=p@chr12:52913727..52913740,+ | ||
}} | }} |
Latest revision as of 09:38, 24 July 2015
Short description: | p@chr12:52913727..52913740, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:52913727..52913740, + |
Coexpression cluster: | C207_Corneal_Keratinocyte_Esophageal_Mammary_Bronchial_Urothelial_Sebocyte |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
respiratory epithelial cell | 2.67e-22 | 13 |
endo-epithelial cell | 3.33e-19 | 42 |
epithelial cell of tracheobronchial tree | 4.89e-19 | 9 |
epithelial cell of lower respiratory tract | 4.89e-19 | 9 |
epithelial cell | 7.42e-17 | 253 |
general ecto-epithelial cell | 2.40e-16 | 14 |
bronchial epithelial cell | 1.50e-15 | 3 |
duct epithelial cell | 4.53e-15 | 3 |
branched duct epithelial cell | 4.53e-15 | 3 |
tracheal epithelial cell | 4.53e-15 | 3 |
tracheoblast | 4.53e-15 | 3 |
stratified squamous epithelial cell | 1.25e-13 | 6 |
keratin accumulating cell | 1.25e-13 | 6 |
stratified epithelial cell | 1.25e-13 | 6 |
keratinizing barrier epithelial cell | 1.25e-13 | 6 |
epithelial fate stem cell | 1.25e-13 | 6 |
stratified epithelial stem cell | 1.25e-13 | 6 |
surface ectodermal cell | 1.25e-13 | 6 |
endodermal cell | 4.67e-13 | 58 |
ecto-epithelial cell | 3.11e-12 | 34 |
mammary gland epithelial cell | 2.95e-11 | 4 |
corneal epithelial cell | 5.95e-11 | 2 |
keratinocyte | 1.16e-09 | 5 |
acinar cell of salivary gland | 2.11e-07 | 3 |
placental epithelial cell | 2.99e-07 | 3 |
epithelial cell of Malassez | 3.28e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
lower respiratory tract epithelium | 1.50e-15 | 3 |
epithelium of bronchus | 1.50e-15 | 3 |
mammary gland | 2.95e-11 | 4 |
mammary bud | 2.95e-11 | 4 |
mammary ridge | 2.95e-11 | 4 |
mammary placode | 2.95e-11 | 4 |
tracheobronchial tree | 3.58e-11 | 15 |
lower respiratory tract | 3.58e-11 | 15 |
bronchus | 1.64e-09 | 5 |
endoderm-derived structure | 3.24e-08 | 160 |
endoderm | 3.24e-08 | 160 |
presumptive endoderm | 3.24e-08 | 160 |
respiratory system | 4.70e-08 | 74 |
thoracic cavity element | 7.33e-08 | 34 |
thoracic cavity | 7.33e-08 | 34 |
surface structure | 1.25e-07 | 99 |
thoracic segment organ | 1.33e-07 | 35 |
esophagus | 2.99e-07 | 3 |
esophageal region | 2.99e-07 | 3 |
tongue | 5.22e-07 | 3 |
gustatory system | 5.22e-07 | 3 |
future tongue | 5.22e-07 | 3 |
respiratory tract | 6.83e-07 | 54 |
epithelial fold | 8.75e-07 | 47 |