FFCP PHASE1:Hg19::chr17:70420494..70420517,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:70420494..70420517,+ | |||
|coexpression_cluster_id=C189 | |||
|description=CAGE_peak_at_chr17:70420494..70420517,+ | |description=CAGE_peak_at_chr17:70420494..70420517,+ | ||
|id=chr17:70420494..70420517,+ | |id=chr17:70420494..70420517,+ | ||
|ontology_enrichment_celltype=CL:0000945!2.87e-10!24;CL:0000826!2.87e-10!24;CL:0000838!2.78e-08!52;CL:0000542!4.52e-08!53;CL:0000051!4.52e-08!53 | |ontology_enrichment_celltype=CL:0000945!2.87e-10!24;CL:0000826!2.87e-10!24;CL:0000838!2.78e-08!52;CL:0000542!4.52e-08!53;CL:0000051!4.52e-08!53 | ||
|ontology_enrichment_celltype_v019=CL:0000945;2.75e-23;24!CL:0000322;1.35e-08;3!CL:0000306;9.36e-07;4!CL:0002222;9.36e-07;4!CL:0002224;9.36e-07;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000945,2.75e-23,24;CL:0000826,2.75e-23,24;CL:0000838,7.11e-11,52;CL:0000542,1.13e-10,53;CL:0000051,1.13e-10,53;CL:0000322,1.51e-08,3;CL:0000306,9.11e-07,4;CL:0002222,9.11e-07,4;CL:0002224,9.11e-07,4 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:305!3.46e-08!106;DOID:0060058!5.20e-08!10;DOID:4074!1.36e-07!2;DOID:4905!1.36e-07!2;DOID:3498!1.36e-07!2;DOID:0050687!4.19e-07!143 | |||
|ontology_enrichment_disease_v019=DOID:630;2.34e-23;1!DOID:0050177;2.34e-23;1!DOID:0050427;2.34e-23;1!DOID:3910;3.06e-12;2 | |||
|ontology_enrichment_disease_v019_2=DOID:630,2.10e-23,1;DOID:0050177,2.10e-23,1;DOID:0050427,2.10e-23,1;DOID:3910,3.62e-12,2 | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019=UBERON:0004903;3.06e-12;2!UBERON:0002173;3.06e-12;2!UBERON:0002186;3.06e-12;2!UBERON:0004821;1.35e-08;3!UBERON:0007499;1.35e-08;3!UBERON:0003215;1.35e-08;3!UBERON:0010368;1.35e-08;3!UBERON:0009911;1.35e-08;3!UBERON:0002299;1.35e-08;3!UBERON:0006524;1.35e-08;3!UBERON:0008874;1.35e-08;3!UBERON:0002169;1.35e-08;3!UBERON:0004894;1.35e-08;3!UBERON:0010077;9.36e-07;4!UBERON:0005389;9.36e-07;4!UBERON:0000484;9.36e-07;4!UBERON:0009856;9.36e-07;4!UBERON:0000965;9.36e-07;4!UBERON:0001803;9.36e-07;4 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004903,3.62e-12,2;UBERON:0002173,3.62e-12,2;UBERON:0002186,3.62e-12,2;UBERON:0004821,1.51e-08,3;UBERON:0003215,1.51e-08,3;UBERON:0010368,1.51e-08,3;UBERON:0009911,1.51e-08,3;UBERON:0002299,1.51e-08,3;UBERON:0006524,1.51e-08,3;UBERON:0008874,1.51e-08,3;UBERON:0002169,1.51e-08,3;UBERON:0004894,1.51e-08,3;UBERON:0010077,9.11e-07,4;UBERON:0005389,9.11e-07,4;UBERON:0000484,9.11e-07,4;UBERON:0002546,9.11e-07,4;UBERON:0000965,9.11e-07,4;UBERON:0001803,9.11e-07,4;UBERON:0003073,9.11e-07,4;UBERON:0005426,9.11e-07,4 | |||
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| ||
|short_description=p@chr17:70420494..70420517,+ | |short_description=p@chr17:70420494..70420517,+ | ||
}} | }} |
Latest revision as of 20:33, 25 July 2015
Short description: | p@chr17:70420494..70420517, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:70420494..70420517, + |
Coexpression cluster: | C189_b_splenic_tonsil_CD19_lymph_appendix_spleen |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte of B lineage | 2.75e-23 | 24 |
pro-B cell | 2.75e-23 | 24 |
lymphoid lineage restricted progenitor cell | 7.11e-11 | 52 |
lymphocyte | 1.13e-10 | 53 |
common lymphoid progenitor | 1.13e-10 | 53 |
pneumocyte | 1.51e-08 | 3 |
crystallin accumulating cell | 9.11e-07 | 4 |
vertebrate lens cell | 9.11e-07 | 4 |
lens epithelial cell | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
bronchoalveolar duct junction | 3.62e-12 | 2 |
alveolar duct | 3.62e-12 | 2 |
bronchiole | 3.62e-12 | 2 |
pulmonary alveolus epithelium | 1.51e-08 | 3 |
alveolus | 1.51e-08 | 3 |
pulmonary lobule | 1.51e-08 | 3 |
lobule | 1.51e-08 | 3 |
alveolus of lung | 1.51e-08 | 3 |
alveolar system | 1.51e-08 | 3 |
pulmonary acinus | 1.51e-08 | 3 |
alveolar sac | 1.51e-08 | 3 |
alveolar wall | 1.51e-08 | 3 |
cuboidal epithelium | 9.11e-07 | 4 |
transparent eye structure | 9.11e-07 | 4 |
simple cuboidal epithelium | 9.11e-07 | 4 |
cranial placode | 9.11e-07 | 4 |
lens of camera-type eye | 9.11e-07 | 4 |
epithelium of lens | 9.11e-07 | 4 |
lens placode | 9.11e-07 | 4 |
lens vesicle | 9.11e-07 | 4 |
Ontology term | p-value | n |
---|---|---|
genetic disease | 2.10e-23 | 1 |
monogenic disease | 2.10e-23 | 1 |
xeroderma pigmentosum | 2.10e-23 | 1 |
lung adenocarcinoma | 3.62e-12 | 2 |