FFCP PHASE1:Hg19::chr18:21484604..21484624,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr18:21484604..21484624,+ | |||
|coexpression_cluster_id=C363 | |||
|description=CAGE_peak_at_chr18:21484604..21484624,+ | |description=CAGE_peak_at_chr18:21484604..21484624,+ | ||
|id=chr18:21484604..21484624,+ | |id=chr18:21484604..21484624,+ | ||
|ontology_enrichment_celltype=CL:0002076!1.21e-23!43;CL:0000066!1.49e-19!254;CL:0000223!3.62e-15!59;CL:0002251!1.85e-11!21;CL:0002368!2.22e-09!13;CL:0002621!1.20e-07!3;CL:0002159!1.40e-07!13;CL:0000622!3.81e-07!5;CL:0002541!4.16e-07!3;CL:0002623!4.33e-07!3;CL:0000349!5.74e-07!3;CL:0002577!5.74e-07!3 | |ontology_enrichment_celltype=CL:0002076!1.21e-23!43;CL:0000066!1.49e-19!254;CL:0000223!3.62e-15!59;CL:0002251!1.85e-11!21;CL:0002368!2.22e-09!13;CL:0002621!1.20e-07!3;CL:0002159!1.40e-07!13;CL:0000622!3.81e-07!5;CL:0002541!4.16e-07!3;CL:0002623!4.33e-07!3;CL:0000349!5.74e-07!3;CL:0002577!5.74e-07!3 | ||
|ontology_enrichment_celltype_v019=CL:0002621;3.86e-21;3!CL:0002076;7.17e-21;42!CL:0000240;3.32e-18;6!CL:0000311;3.32e-18;6!CL:0000079;3.32e-18;6!CL:0000237;3.32e-18;6!CL:0002368;7.72e-18;13!CL:0002159;3.85e-17;14!CL:0002327;1.07e-15;4!CL:0000312;6.54e-13;5!CL:0000362;3.36e-12;9!CL:0002166;1.92e-10;3!CL:0000349;8.58e-09;19!CL:0002251;3.46e-08;20!CL:0002336;8.69e-08;1!CL:0002261;8.69e-08;1!CL:0002170;8.69e-08;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0002076,3.55e-24,42;CL:0002621,3.61e-21,3;CL:0000240,2.43e-18,6;CL:0000311,2.43e-18,6;CL:0000079,2.43e-18,6;CL:0000237,2.43e-18,6;CL:0000036,2.43e-18,6;CL:0000357,2.43e-18,6;CL:0000114,2.43e-18,6;CL:0002368,1.14e-17,13;CL:0002159,3.54e-17,14;CL:0000223,7.92e-17,58;CL:0002327,7.94e-16,4;CL:0000066,3.46e-13,253;CL:0000312,6.03e-13,5;CL:0000362,3.08e-12,9;CL:0002166,1.92e-10,3;CL:0000349,8.80e-09,19;CL:0002251,3.15e-08,20;CL:0002336,6.19e-08,1;CL:0002261,6.19e-08,1;CL:0002170,6.19e-08,1;CL:0002077,9.47e-07,34 | |||
|ontology_enrichment_development_v019=CL:0000357;3.32e-18;6!CL:0000114;3.32e-18;6!CL:0000223;2.35e-09;58 | |||
|ontology_enrichment_disease=DOID:1749!6.35e-09!14 | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0005631!2.52e-16!14;UBERON:0000158!2.52e-16!14;UBERON:0003124!4.77e-14!7;UBERON:0000161!1.35e-13!35;UBERON:0004119!1.67e-12!169;UBERON:0000925!1.67e-12!169;UBERON:0006595!1.67e-12!169;UBERON:0000166!2.68e-11!21;UBERON:0000478!7.32e-10!24;UBERON:0001004!1.39e-09!72;UBERON:0000165!2.64e-09!28;UBERON:0000930!2.64e-09!28;UBERON:0001987!1.32e-08!4;UBERON:0004340!1.32e-08!4;UBERON:0001949!1.20e-07!3;UBERON:0003102!3.46e-07!95;UBERON:0000476!4.16e-07!3;UBERON:0000920!4.16e-07!3;UBERON:0003100!5.37e-07!41;UBERON:0001007!7.59e-07!155;UBERON:0001555!7.59e-07!155;UBERON:0007026!7.59e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0001949;3.86e-21;3!UBERON:0001911;1.07e-15;4!UBERON:0005631;4.55e-11;10!UBERON:0000158;4.55e-11;10!UBERON:0010371;1.00e-09;31!UBERON:0003929;2.31e-09;7!UBERON:0000486;2.88e-09;12!UBERON:0000305;3.63e-09;7!UBERON:0003729;1.74e-08;13!UBERON:0003350;3.00e-08;8!UBERON:0001828;3.00e-08;8!UBERON:0001708;4.88e-08;4!UBERON:0008895;4.88e-08;4!UBERON:0001003;2.29e-07;15!UBERON:0007376;2.29e-07;15!UBERON:0000478;6.55e-07;24 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001949,3.61e-21,3;UBERON:0001911,7.94e-16,4;UBERON:0005333,7.94e-16,4;UBERON:0008425,7.94e-16,4;UBERON:0005311,7.94e-16,4;UBERON:0005631,5.37e-12,14;UBERON:0000158,5.37e-12,14;UBERON:0000305,3.95e-09,7;UBERON:0003729,1.55e-08,13;UBERON:0003350,2.93e-08,8;UBERON:0001828,2.93e-08,8;UBERON:0000076,3.66e-08,8;UBERON:0004871,4.79e-08,8;UBERON:0001708,4.89e-08,4;UBERON:0008895,4.89e-08,4;UBERON:0003102,1.19e-07,99;UBERON:0001003,2.18e-07,15;UBERON:0007376,2.18e-07,15;UBERON:0007383,2.18e-07,15;UBERON:0001004,2.95e-07,74;UBERON:0000478,6.68e-07,24;UBERON:0004923,6.78e-07,66 | |||
|phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0.655324116390517,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,3.09217365061275,3.54569956768085,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.73150970389327,2.24803506515239,3.31745608958382,1.48141512253647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.7745345123065,5.81277898693785,2.68675568108545,2.90633938513962,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,6.81721999031168,0.920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,4.13212288402445,3.0750410778417,1.02090169995667,1.2138933702666,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.577332676353072,0,1.08890984861323,0.0941438007767792,0.86101074534246,0,0,2.06751060186264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870036263921,0,3.07160702099232,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0.269605053441981,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0.366390373607449,6.92945208824225,0,0,0,0,0,0,0,0,0.843992258112108,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0.520679215005393,0.0979923974143777,0.0870592065804026,0,0,0,0,0.0821154570532092,0.0969890164884194,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0.11796972334774,0.183428598521679,0.346576998451015,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0,0,0,0,0.354809480650555,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,1.24329698497822,0.85359238546975,0.691259661814092,0,0.118332000730565,0,0,1.3746412112643,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0.240724100067505,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0.217716747896961,0.342233301085281,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | |phase1_expression=0,0,0.281908808191942,0,0,0,0,0,0,0,0,0.655324116390517,1.31883489114227,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.30120591877825,1.10926203050036,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.370784442784429,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.24406205754817,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.161646056818812,0,0,0,3.09217365061275,3.54569956768085,2.29443676311203,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.73150970389327,2.24803506515239,3.31745608958382,1.48141512253647,0,0,0,0,0,0,0,0,0,0,0,0,0,0,13.7745345123065,5.81277898693785,2.68675568108545,2.90633938513962,2.30029607499127,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.410952645100767,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.178428988797162,0,0.117141414992713,0,0,0,0,0.184369168541703,0,0,0,0,0,0,0.303127571446259,3.32870879020994,0.604780586659361,0,0,0,0,0,0,0,0,0,0,0,0,0,6.81721999031168,0.920809889358963,0.114814448164607,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.831076008928724,0.223874754722178,0,0,0,0,0,0.103041011647722,0.0915694648183434,0,0,1.30012049207304,0,0,0,0,0,0,0,0,0,4.13212288402445,3.0750410778417,1.02090169995667,1.2138933702666,0,0,0,0.308033580176089,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0982490410131212,0,0,0,0,0,0,0.577332676353072,0,1.08890984861323,0.0941438007767792,0.86101074534246,0,0,2.06751060186264,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,2.14870036263921,0,3.07160702099232,0,0.140669416410513,0,0,0,0,0,0,0,0,0,0.269605053441981,0.179021174675609,0,0,0,0,0,0,0,0,0,0,0.227586896570999,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.638002319463839,0.366390373607449,6.92945208824225,0,0,0,0,0,0,0,0,0.843992258112108,0,0,0,0,0,0,0,0.123563938946503,0,0,0,0,0,0,0,0,0,0,0,0.150323419414493,0,0,0,0,0,0,0,0.520679215005393,0.0979923974143777,0.0870592065804026,0,0,0,0,0.0821154570532092,0.0969890164884194,0,0,0,0,0,0,0,0,0.19980960958213,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.262887354279314,0,0,0,0.199679000498991,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.415440338029185,0,0,0,0.335434687599266,0,0,0,0,0.191915197319445,0,0,0,0,0,0,0,0,0,0.113312091520126,0,0,0,0,0,0.704815022316672,0,0,0,0,0,0,0,0,0,0,0,0,0,0.122026264901963,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.107410557042488,0,0,0,0,0,0,0,0,0,0,0,0,0,0.308801447160972,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.419638523158333,0.622077260032973,0,0,0,0,0,0,0,0,0,0.157723490002507,0,0,0,0,0,0,0,0,0,0.161475645631851,0,0,0.11796972334774,0.183428598521679,0.346576998451015,0,0,0,0.0752103283492573,0,0,0,0.163771917510097,0.295712172434091,0,0,0,0,0,0,0.496211178389294,0,0.511049710558381,0,0,0,0,0.354809480650555,0,0,0,0,0.118193840883968,0.222462803784138,0,0,0,0,0.215927591218621,0.47775168788705,0,0,0,0,0,1.24329698497822,0.85359238546975,0.691259661814092,0,0.118332000730565,0,0,1.3746412112643,0.31020638566432,0,0.111855431797792,0,0,0,0,0,0,0,0,0,0,0,0,0.0771741581079447,0.218559560503957,0,0,0,0,0,0,0,0,0,0,0,1.41157948686277,0.240724100067505,0,0.458729283404541,0,0,0,0,1.0580536810308,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0620747142958579,0,0,0,0.217716747896961,0.342233301085281,0,0,0,0.0814032686109745,0,0,0,0,0,0,0,0,0 | ||
|short_description=p@chr18:21484604..21484624,+ | |short_description=p@chr18:21484604..21484624,+ | ||
}} | }} |
Latest revision as of 00:00, 26 July 2015
Short description: | p@chr18:21484604..21484624, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr18:21484604..21484624, + |
Coexpression cluster: | C363_Mallassezderived_Gingival_Keratinocyte_Mammary_Prostate_Small_Urothelial |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
endo-epithelial cell | 3.55e-24 | 42 |
gingival epithelial cell | 3.61e-21 | 3 |
stratified squamous epithelial cell | 2.43e-18 | 6 |
keratin accumulating cell | 2.43e-18 | 6 |
stratified epithelial cell | 2.43e-18 | 6 |
keratinizing barrier epithelial cell | 2.43e-18 | 6 |
epithelial fate stem cell | 2.43e-18 | 6 |
stratified epithelial stem cell | 2.43e-18 | 6 |
surface ectodermal cell | 2.43e-18 | 6 |
respiratory epithelial cell | 1.14e-17 | 13 |
general ecto-epithelial cell | 3.54e-17 | 14 |
endodermal cell | 7.92e-17 | 58 |
mammary gland epithelial cell | 7.94e-16 | 4 |
epithelial cell | 3.46e-13 | 253 |
keratinocyte | 6.03e-13 | 5 |
epidermal cell | 3.08e-12 | 9 |
epithelial cell of Malassez | 1.92e-10 | 3 |
extraembryonic cell | 8.80e-09 | 19 |
epithelial cell of alimentary canal | 3.15e-08 | 20 |
buccal mucosa cell | 6.19e-08 | 1 |
endothelial cell of viscerocranial mucosa | 6.19e-08 | 1 |
keratinized cell of the oral mucosa | 6.19e-08 | 1 |
ecto-epithelial cell | 9.47e-07 | 34 |
Ontology term | p-value | n |
---|---|---|
gingival epithelium | 3.61e-21 | 3 |
mammary gland | 7.94e-16 | 4 |
mammary bud | 7.94e-16 | 4 |
mammary ridge | 7.94e-16 | 4 |
mammary placode | 7.94e-16 | 4 |
extraembryonic membrane | 5.37e-12 | 14 |
membranous layer | 5.37e-12 | 14 |
amnion | 3.95e-09 | 7 |
mouth mucosa | 1.55e-08 | 13 |
epithelium of mucosa | 2.93e-08 | 8 |
gingiva | 2.93e-08 | 8 |
external ectoderm | 3.66e-08 | 8 |
somatic layer of lateral plate mesoderm | 4.79e-08 | 8 |
jaw skeleton | 4.89e-08 | 4 |
splanchnocranium | 4.89e-08 | 4 |
surface structure | 1.19e-07 | 99 |
skin epidermis | 2.18e-07 | 15 |
outer epithelium | 2.18e-07 | 15 |
enveloping layer of ectoderm | 2.18e-07 | 15 |
respiratory system | 2.95e-07 | 74 |
extraembryonic structure | 6.68e-07 | 24 |
organ component layer | 6.78e-07 | 66 |