FFCP PHASE1:Hg19::chr1:156721427..156721445,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3068 | |EntrezGene=3068 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=4856 | |HGNC=4856 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-37bp_to_ENST00000537739_5end | |association_with_transcript=-37bp_to_ENST00000537739_5end | ||
|cluster_id=chr1:156721427..156721445,- | |||
|coexpression_cluster_id=C3883 | |||
|description=CAGE_peak_2_at_HDGF_5end | |description=CAGE_peak_2_at_HDGF_5end | ||
|id=chr1:156721427..156721445,- | |id=chr1:156721427..156721445,- | ||
|ontology_enrichment_celltype=CL:0000066!8.35e-29!254;CL:0002321!4.88e-23!248;CL:0000220!7.50e-23!246;CL:0000548!1.10e-18!679;CL:0000004!1.10e-18!679;CL:0000255!1.10e-18!679;CL:0000012!4.84e-18!682;CL:0000076!1.46e-11!62;CL:0000222!1.77e-11!119;CL:0000003!5.68e-11!722;CL:0000213!1.09e-08!57;CL:0000215!1.09e-08!57;CL:0000055!6.48e-08!180;CL:0000144!7.00e-07!625 | |ontology_enrichment_celltype=CL:0000066!8.35e-29!254;CL:0002321!4.88e-23!248;CL:0000220!7.50e-23!246;CL:0000548!1.10e-18!679;CL:0000004!1.10e-18!679;CL:0000255!1.10e-18!679;CL:0000012!4.84e-18!682;CL:0000076!1.46e-11!62;CL:0000222!1.77e-11!119;CL:0000003!5.68e-11!722;CL:0000213!1.09e-08!57;CL:0000215!1.09e-08!57;CL:0000055!6.48e-08!180;CL:0000144!7.00e-07!625 | ||
|ontology_enrichment_celltype_v019=CL:1000449;4.59e-07;15 | |||
|ontology_enrichment_celltype_v019_2=CL:0000066,3.67e-29,253;CL:0002321,4.28e-23,250;CL:0000076,1.69e-11,63;CL:0000222,1.74e-11,121;CL:0000213,5.07e-09,58;CL:0000215,5.07e-09,58;CL:0002078,4.78e-07,45;CL:1000449,4.95e-07,15 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease=DOID:162!5.95e-29!235;DOID:14566!4.20e-28!239;DOID:0050687!2.79e-17!143;DOID:305!5.41e-14!106;DOID:0050686!1.27e-11!137;DOID:2531!8.44e-09!51;DOID:0060083!8.44e-09!51;DOID:1240!4.82e-08!39 | |||
|ontology_enrichment_disease_v019=DOID:1240;6.36e-07;39 | |||
|ontology_enrichment_disease_v019_2=DOID:162,5.94e-29,235;DOID:14566,4.20e-28,239;DOID:0050687,2.78e-17,143;DOID:305,5.41e-14,106;DOID:0050686,1.26e-11,137;DOID:2531,8.44e-09,51;DOID:0060083,8.44e-09,51;DOID:1240,4.82e-08,39 | |||
|ontology_enrichment_uberon=UBERON:0003104!4.70e-13!238;UBERON:0009142!4.70e-13!238;UBERON:0004119!3.65e-09!169;UBERON:0000925!3.65e-09!169;UBERON:0006595!3.65e-09!169;UBERON:0002100!7.56e-09!216;UBERON:0005256!1.54e-07!143;UBERON:0001007!1.57e-07!155;UBERON:0001555!1.57e-07!155;UBERON:0007026!1.57e-07!155;UBERON:0003914!1.64e-07!118;UBERON:0000490!1.65e-07!138;UBERON:0000077!2.57e-07!130;UBERON:0008947!3.02e-07!38;UBERON:0003258!3.02e-07!38;UBERON:0000072!5.08e-07!46 | |||
|ontology_enrichment_uberon_v019=UBERON:0006555;4.59e-07;15!UBERON:0004819;4.59e-07;15!UBERON:0001285;4.59e-07;15!UBERON:0007684;4.59e-07;15!UBERON:0000072;8.09e-07;37 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002100,2.30e-09,199;UBERON:0000490,8.09e-09,148;UBERON:0004119,1.15e-08,160;UBERON:0000925,1.15e-08,160;UBERON:0006595,1.15e-08,160;UBERON:0003104,7.76e-08,160;UBERON:0009142,7.76e-08,160;UBERON:0003914,9.68e-08,117;UBERON:0005177,2.09e-07,101;UBERON:0001007,2.95e-07,145;UBERON:0001555,2.95e-07,145;UBERON:0007026,2.95e-07,145;UBERON:0008947,3.02e-07,38;UBERON:0003258,3.02e-07,38;UBERON:0004211,4.95e-07,15;UBERON:0009773,4.95e-07,15;UBERON:0001231,4.95e-07,15;UBERON:0001285,4.95e-07,15;UBERON:0007684,4.95e-07,15;UBERON:0004208,4.95e-07,15 | |||
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| ||
|short_description=p2@HDGF | |short_description=p2@HDGF | ||
}} | }} |
Latest revision as of 17:55, 17 September 2015
Short description: | p2@HDGF |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_2_at_HDGF_5end |
Coexpression cluster: | C3883_Reticulocytes_teratocarcinoma_Renal_transitionalcell_mesothelioma_Tracheal_Alveolar |
Association with transcript: | -37bp_to_ENST00000537739_5end |
EntrezGene: | HDGF |
HGNC: | 4856 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
epithelial cell | 3.67e-29 | 253 |
embryonic cell | 4.28e-23 | 250 |
squamous epithelial cell | 1.69e-11 | 63 |
mesodermal cell | 1.74e-11 | 121 |
lining cell | 5.07e-09 | 58 |
barrier cell | 5.07e-09 | 58 |
meso-epithelial cell | 4.78e-07 | 45 |
epithelial cell of nephron | 4.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
trunk | 2.30e-09 | 199 |
unilaminar epithelium | 8.09e-09 | 148 |
endoderm-derived structure | 1.15e-08 | 160 |
endoderm | 1.15e-08 | 160 |
presumptive endoderm | 1.15e-08 | 160 |
mesenchyme | 7.76e-08 | 160 |
entire embryonic mesenchyme | 7.76e-08 | 160 |
epithelial tube | 9.68e-08 | 117 |
trunk region element | 2.09e-07 | 101 |
digestive system | 2.95e-07 | 145 |
digestive tract | 2.95e-07 | 145 |
primitive gut | 2.95e-07 | 145 |
respiratory primordium | 3.02e-07 | 38 |
endoderm of foregut | 3.02e-07 | 38 |
nephron epithelium | 4.95e-07 | 15 |
renal tubule | 4.95e-07 | 15 |
nephron tubule | 4.95e-07 | 15 |
nephron | 4.95e-07 | 15 |
uriniferous tubule | 4.95e-07 | 15 |
nephrogenic mesenchyme | 4.95e-07 | 15 |
Ontology term | p-value | n |
---|---|---|
cancer | 5.94e-29 | 235 |
disease of cellular proliferation | 4.20e-28 | 239 |
cell type cancer | 2.78e-17 | 143 |
carcinoma | 5.41e-14 | 106 |
organ system cancer | 1.26e-11 | 137 |
hematologic cancer | 8.44e-09 | 51 |
immune system cancer | 8.44e-09 | 51 |
leukemia | 4.82e-08 | 39 |