FFCP PHASE1:Hg19::chr16:27225918..27225945,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=79831 | |EntrezGene=79831 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=25840 | |HGNC=25840 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=0bp_to_uc010bxx.2_5end | |association_with_transcript=0bp_to_uc010bxx.2_5end | ||
|cluster_id=chr16:27225918..27225945,+ | |||
|coexpression_cluster_id=C211 | |||
|description=CAGE_peak_4_at_JMJD5_5end | |description=CAGE_peak_4_at_JMJD5_5end | ||
|id=chr16:27225918..27225945,+ | |id=chr16:27225918..27225945,+ | ||
|ontology_enrichment_celltype=CL:0000181!4.81e-13!12;CL:0000417!4.81e-13!12;CL:0000668!4.81e-13!12;CL:0000414!4.81e-13!12;CL:0000412!4.81e-13!12;CL:0000182!4.81e-13!12 | |ontology_enrichment_celltype=CL:0000181!4.81e-13!12;CL:0000417!4.81e-13!12;CL:0000668!4.81e-13!12;CL:0000414!4.81e-13!12;CL:0000412!4.81e-13!12;CL:0000182!4.81e-13!12 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.46e-12;12 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.46e-12,12 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002107!5.25e-24!19;UBERON:0006925!5.25e-24!19;UBERON:0008836!5.25e-24!19;UBERON:0008835!1.20e-20!22;UBERON:0003894!1.20e-20!22;UBERON:0009854!1.01e-19!23;UBERON:0007499!4.31e-18!25;UBERON:0009497!4.31e-18!25;UBERON:0000015!4.31e-18!25;UBERON:0002423!4.31e-18!25;UBERON:0006235!4.31e-18!25;UBERON:0004161!4.31e-18!25;UBERON:0005057!2.27e-17!26;UBERON:0009856!2.27e-17!26;UBERON:0002365!1.85e-14!31;UBERON:0002330!1.85e-14!31;UBERON:0002368!9.96e-13!35;UBERON:0000949!9.68e-10!45;UBERON:0004921!9.62e-09!129;UBERON:0004185!9.62e-09!129;UBERON:0003929!5.39e-08!54;UBERON:0005172!7.77e-08!55;UBERON:0005173!7.77e-08!55;UBERON:0002530!2.96e-07!59;UBERON:0002037!4.17e-07!6;UBERON:0006215!4.17e-07!6;UBERON:0002417!5.42e-07!61;UBERON:0000916!5.42e-07!61;UBERON:0001007!5.78e-07!155;UBERON:0001555!5.78e-07!155;UBERON:0007026!5.78e-07!155 | |||
|ontology_enrichment_uberon_v019=UBERON:0002108;2.30e-28;4!UBERON:0002107;2.73e-20;19!UBERON:0006925;2.73e-20;19!UBERON:0002423;1.92e-15;25!UBERON:0000160;5.49e-14;17!UBERON:0002365;1.91e-12;31!UBERON:0002330;1.91e-12;31!UBERON:0005409;5.17e-11;22!UBERON:0002368;8.67e-11;33!UBERON:0001007;3.46e-09;81!UBERON:0000949;6.32e-08;43 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002108,2.10e-28,4;UBERON:0002107,2.73e-20,19;UBERON:0006925,2.73e-20,19;UBERON:0008836,2.73e-20,19;UBERON:0008835,1.54e-17,22;UBERON:0003894,1.54e-17,22;UBERON:0009854,8.85e-17,23;UBERON:0007499,1.92e-15,25;UBERON:0009497,1.92e-15,25;UBERON:0000015,1.92e-15,25;UBERON:0002423,1.92e-15,25;UBERON:0006235,1.92e-15,25;UBERON:0004161,1.92e-15,25;UBERON:0009856,7.49e-15,26;UBERON:0000160,5.50e-14,17;UBERON:0002365,1.83e-12,31;UBERON:0002330,1.83e-12,31;UBERON:0002368,4.84e-11,35;UBERON:0005409,8.96e-10,25;UBERON:0004921,1.13e-09,118;UBERON:0000949,1.39e-08,45;UBERON:0001007,1.01e-07,145;UBERON:0001555,1.01e-07,145;UBERON:0007026,1.01e-07,145;UBERON:0003929,3.82e-07,54;UBERON:0005172,3.82e-07,54;UBERON:0005173,3.82e-07,54;UBERON:0011216,4.04e-07,223;UBERON:0004119,6.47e-07,160;UBERON:0000925,6.47e-07,160;UBERON:0006595,6.47e-07,160 | |||
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|short_description=p4@JMJD5 | |short_description=p4@JMJD5 | ||
}} | }} |
Latest revision as of 21:05, 15 September 2015
Short description: | p4@JMJD5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_4_at_JMJD5_5end |
Coexpression cluster: | C211_small_Hepatocyte_liver_colon_temporal_duodenum_kidney |
Association with transcript: | 0bp_to_uc010bxx.2_5end |
EntrezGene: | JMJD5 |
HGNC: | 25840 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.46e-12 | 12 |
Ontology term | p-value | n |
---|---|---|
small intestine | 2.10e-28 | 4 |
liver | 2.73e-20 | 19 |
digestive gland | 2.73e-20 | 19 |
liver bud | 2.73e-20 | 19 |
hepatic diverticulum | 1.54e-17 | 22 |
liver primordium | 1.54e-17 | 22 |
digestive tract diverticulum | 8.85e-17 | 23 |
epithelial sac | 1.92e-15 | 25 |
epithelium of foregut-midgut junction | 1.92e-15 | 25 |
anatomical boundary | 1.92e-15 | 25 |
hepatobiliary system | 1.92e-15 | 25 |
foregut-midgut junction | 1.92e-15 | 25 |
septum transversum | 1.92e-15 | 25 |
sac | 7.49e-15 | 26 |
intestine | 5.50e-14 | 17 |
exocrine gland | 1.83e-12 | 31 |
exocrine system | 1.83e-12 | 31 |
endocrine gland | 4.84e-11 | 35 |
gastrointestinal system | 8.96e-10 | 25 |
subdivision of digestive tract | 1.13e-09 | 118 |
endocrine system | 1.39e-08 | 45 |
digestive system | 1.01e-07 | 145 |
digestive tract | 1.01e-07 | 145 |
primitive gut | 1.01e-07 | 145 |
gut epithelium | 3.82e-07 | 54 |
abdomen element | 3.82e-07 | 54 |
abdominal segment element | 3.82e-07 | 54 |
organ system subdivision | 4.04e-07 | 223 |
endoderm-derived structure | 6.47e-07 | 160 |
endoderm | 6.47e-07 | 160 |
presumptive endoderm | 6.47e-07 | 160 |