FFCP PHASE1:Hg19::chr17:28550062..28550090,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr17:28550062..28550090,- | |||
|coexpression_cluster_id=C25 | |||
|description=CAGE_peak_at_chr17:28550062..28550090,- | |description=CAGE_peak_at_chr17:28550062..28550090,- | ||
|id=chr17:28550062..28550090,- | |id=chr17:28550062..28550090,- | ||
|ontology_enrichment_celltype=CL:0000181!9.80e-21!12;CL:0000417!9.80e-21!12;CL:0000668!9.80e-21!12;CL:0000414!9.80e-21!12;CL:0000412!9.80e-21!12;CL:0000182!9.80e-21!12;CL:0002563!6.65e-11!4;CL:0000223!7.26e-10!59;CL:0002322!1.08e-08!5 | |ontology_enrichment_celltype=CL:0000181!9.80e-21!12;CL:0000417!9.80e-21!12;CL:0000668!9.80e-21!12;CL:0000414!9.80e-21!12;CL:0000412!9.80e-21!12;CL:0000182!9.80e-21!12;CL:0002563!6.65e-11!4;CL:0000223!7.26e-10!59;CL:0002322!1.08e-08!5 | ||
|ontology_enrichment_celltype_v019=CL:0000182;3.73e-19;12!CL:0002535;2.97e-08;2 | |||
|ontology_enrichment_celltype_v019_2=CL:0000182,3.73e-19,12;CL:0000223,1.67e-08,58;CL:0002535,2.87e-08,2 | |||
|ontology_enrichment_development_v019=UBERON:0004161;7.34e-21;11!UBERON:0009497;1.04e-17;13!UBERON:0003104;2.34e-11;31!UBERON:0001041;7.84e-08;30 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000160!6.65e-28!27;UBERON:0001052!1.23e-22!4;UBERON:0000059!1.67e-22!11;UBERON:0005409!1.86e-21!35;UBERON:0004907!3.02e-18!5;UBERON:0004921!4.59e-15!129;UBERON:0004185!4.59e-15!129;UBERON:0002107!4.46e-13!19;UBERON:0006925!4.46e-13!19;UBERON:0008836!4.46e-13!19;UBERON:0001007!3.65e-12!155;UBERON:0001555!3.65e-12!155;UBERON:0007026!3.65e-12!155;UBERON:0008835!2.80e-11!22;UBERON:0003894!2.80e-11!22;UBERON:0004119!5.74e-11!169;UBERON:0000925!5.74e-11!169;UBERON:0006595!5.74e-11!169;UBERON:0001242!6.65e-11!4;UBERON:0001262!6.65e-11!4;UBERON:0004786!6.65e-11!4;UBERON:0004808!6.65e-11!4;UBERON:0001277!6.65e-11!4;UBERON:0003929!7.23e-11!54;UBERON:0009854!8.75e-11!23;UBERON:0001155!1.25e-10!9;UBERON:0007499!6.52e-10!25;UBERON:0009497!6.52e-10!25;UBERON:0000015!6.52e-10!25;UBERON:0002423!6.52e-10!25;UBERON:0006235!6.52e-10!25;UBERON:0004161!6.52e-10!25;UBERON:0005057!1.59e-09!26;UBERON:0009856!1.59e-09!26;UBERON:0003350!6.70e-09!5;UBERON:0001046!1.61e-08!19;UBERON:0002365!5.76e-08!31;UBERON:0002330!5.76e-08!31;UBERON:0002368!4.89e-07!35;UBERON:0005911!7.94e-07!82;UBERON:0002108!9.71e-07!14 | |ontology_enrichment_uberon=UBERON:0000160!6.65e-28!27;UBERON:0001052!1.23e-22!4;UBERON:0000059!1.67e-22!11;UBERON:0005409!1.86e-21!35;UBERON:0004907!3.02e-18!5;UBERON:0004921!4.59e-15!129;UBERON:0004185!4.59e-15!129;UBERON:0002107!4.46e-13!19;UBERON:0006925!4.46e-13!19;UBERON:0008836!4.46e-13!19;UBERON:0001007!3.65e-12!155;UBERON:0001555!3.65e-12!155;UBERON:0007026!3.65e-12!155;UBERON:0008835!2.80e-11!22;UBERON:0003894!2.80e-11!22;UBERON:0004119!5.74e-11!169;UBERON:0000925!5.74e-11!169;UBERON:0006595!5.74e-11!169;UBERON:0001242!6.65e-11!4;UBERON:0001262!6.65e-11!4;UBERON:0004786!6.65e-11!4;UBERON:0004808!6.65e-11!4;UBERON:0001277!6.65e-11!4;UBERON:0003929!7.23e-11!54;UBERON:0009854!8.75e-11!23;UBERON:0001155!1.25e-10!9;UBERON:0007499!6.52e-10!25;UBERON:0009497!6.52e-10!25;UBERON:0000015!6.52e-10!25;UBERON:0002423!6.52e-10!25;UBERON:0006235!6.52e-10!25;UBERON:0004161!6.52e-10!25;UBERON:0005057!1.59e-09!26;UBERON:0009856!1.59e-09!26;UBERON:0003350!6.70e-09!5;UBERON:0001046!1.61e-08!19;UBERON:0002365!5.76e-08!31;UBERON:0002330!5.76e-08!31;UBERON:0002368!4.89e-07!35;UBERON:0005911!7.94e-07!82;UBERON:0002108!9.71e-07!14 | ||
|ontology_enrichment_uberon_v019=UBERON:0000160;3.10e-38;17!UBERON:0005409;7.40e-30;22!UBERON:0002108;1.13e-26;4!UBERON:0004921;3.47e-17;33!UBERON:0002107;3.20e-12;19!UBERON:0006925;3.20e-12;19!UBERON:0000059;3.45e-12;11!UBERON:0001007;1.72e-09;81!UBERON:0002423;2.36e-09;25!UBERON:0006955;2.97e-08;2!UBERON:0004801;2.97e-08;2!UBERON:0001155;2.77e-07;9!UBERON:0001555;3.07e-07;54!UBERON:0002365;3.16e-07;31!UBERON:0002330;3.16e-07;31 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000160,3.19e-38,17;UBERON:0002108,1.18e-26,4;UBERON:0005409,2.30e-26,25;UBERON:0004921,5.95e-16,118;UBERON:0001007,9.03e-13,145;UBERON:0001555,9.03e-13,145;UBERON:0007026,9.03e-13,145;UBERON:0002107,3.20e-12,19;UBERON:0006925,3.20e-12,19;UBERON:0008836,3.20e-12,19;UBERON:0000059,3.51e-12,11;UBERON:0004119,1.85e-11,160;UBERON:0000925,1.85e-11,160;UBERON:0006595,1.85e-11,160;UBERON:0008835,1.36e-10,22;UBERON:0003894,1.36e-10,22;UBERON:0009854,3.82e-10,23;UBERON:0007499,2.36e-09,25;UBERON:0009497,2.36e-09,25;UBERON:0000015,2.36e-09,25;UBERON:0002423,2.36e-09,25;UBERON:0006235,2.36e-09,25;UBERON:0004161,2.36e-09,25;UBERON:0011216,2.83e-09,223;UBERON:0003929,3.73e-09,54;UBERON:0009856,5.30e-09,26;UBERON:0006955,2.87e-08,2;UBERON:0004801,2.87e-08,2;UBERON:0002365,1.38e-07,31;UBERON:0002330,1.38e-07,31;UBERON:0001155,2.77e-07,9;UBERON:0002368,9.66e-07,35 | |||
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|short_description=p@chr17:28550062..28550090,- | |short_description=p@chr17:28550062..28550090,- | ||
}} | }} |
Latest revision as of 15:14, 25 July 2015
Short description: | p@chr17:28550062..28550090, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr17:28550062..28550090, - |
Coexpression cluster: | C25_small_colon_temporal_duodenum_liver_Hepatocyte_gall |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
hepatocyte | 3.73e-19 | 12 |
endodermal cell | 1.67e-08 | 58 |
epithelial cell of cervix | 2.87e-08 | 2 |
Ontology term | p-value | n |
---|---|---|
intestine | 3.19e-38 | 17 |
small intestine | 1.18e-26 | 4 |
gastrointestinal system | 2.30e-26 | 25 |
subdivision of digestive tract | 5.95e-16 | 118 |
digestive system | 9.03e-13 | 145 |
digestive tract | 9.03e-13 | 145 |
primitive gut | 9.03e-13 | 145 |
liver | 3.20e-12 | 19 |
digestive gland | 3.20e-12 | 19 |
liver bud | 3.20e-12 | 19 |
large intestine | 3.51e-12 | 11 |
endoderm-derived structure | 1.85e-11 | 160 |
endoderm | 1.85e-11 | 160 |
presumptive endoderm | 1.85e-11 | 160 |
hepatic diverticulum | 1.36e-10 | 22 |
liver primordium | 1.36e-10 | 22 |
digestive tract diverticulum | 3.82e-10 | 23 |
epithelial sac | 2.36e-09 | 25 |
epithelium of foregut-midgut junction | 2.36e-09 | 25 |
anatomical boundary | 2.36e-09 | 25 |
hepatobiliary system | 2.36e-09 | 25 |
foregut-midgut junction | 2.36e-09 | 25 |
septum transversum | 2.36e-09 | 25 |
organ system subdivision | 2.83e-09 | 223 |
gut epithelium | 3.73e-09 | 54 |
sac | 5.30e-09 | 26 |
uterine epithelium | 2.87e-08 | 2 |
cervix epithelium | 2.87e-08 | 2 |
exocrine gland | 1.38e-07 | 31 |
exocrine system | 1.38e-07 | 31 |
colon | 2.77e-07 | 9 |
endocrine gland | 9.66e-07 | 35 |