FFCP PHASE1:Hg19::chr11:8892522..8892677,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr11:8892522..8892677,-
|short_description=p3@ST5
|description=CAGE_peak_3_at_ST5_5end
|association_with_transcript=0bp_to_ENST00000526057,ENST00000526126,ENST...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=6764 | |EntrezGene=6764 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=11350 | |HGNC=11350 | ||
|TSSclassifier=strong | |||
|UniProt=E9PPL2,E9PI67,E9PLH6,E9PI72 | |UniProt=E9PPL2,E9PI67,E9PLH6,E9PI72 | ||
|association_with_transcript=0bp_to_ENST00000526057,ENST00000526126,ENST00000526241,ENST00000530938_5end | |||
|cluster_id=chr11:8892522..8892677,- | |||
|description=CAGE_peak_3_at_ST5_5end | |||
|id=chr11:8892522..8892677,- | |||
|ontology_enrichment_celltype=CL:0000055!1.29e-22!180;CL:0000333!2.93e-11!41;CL:0000133!1.78e-10!59;CL:0000221!5.38e-10!71;CL:0002321!7.01e-10!248;CL:0000220!8.93e-10!246;CL:0000183!3.65e-08!59;CL:0000243!8.80e-08!15;CL:0000125!8.80e-08!15;CL:0000030!8.80e-08!15;CL:0000339!8.80e-08!15;CL:0000187!5.96e-07!54;CL:0000057!8.06e-07!75 | |||
|ontology_enrichment_celltype_v019=CL:0000243;5.75e-08;15!CL:0000125;5.75e-08;15!CL:0000349;2.35e-07;19 | |||
|ontology_enrichment_celltype_v019_2=CL:0000333,2.76e-11,41;CL:0000133,4.43e-10,59;CL:0000221,3.86e-09,72;CL:0002321,3.93e-08,250;CL:0000243,5.18e-08,15;CL:0000125,5.18e-08,15;CL:0000030,5.18e-08,15;CL:0000339,5.18e-08,15;CL:0000349,1.89e-07,19;CL:0000057,3.30e-07,76;CL:0000187,4.40e-07,55 | |||
|ontology_enrichment_development_v019=CL:0000339;5.75e-08;15 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000481!1.46e-14!347;UBERON:0000475!1.82e-13!365;UBERON:0000468!4.75e-13!659;UBERON:0000467!6.08e-10!625;UBERON:0000480!8.59e-10!626;UBERON:0000064!2.42e-09!219;UBERON:0005256!3.07e-09!143;UBERON:0000119!3.88e-09!312;UBERON:0003104!6.93e-09!238;UBERON:0009142!6.93e-09!238;UBERON:0000922!1.36e-08!612;UBERON:0000483!1.37e-08!309;UBERON:0000914!5.54e-08!83;UBERON:0002329!5.54e-08!83;UBERON:0003077!5.54e-08!83;UBERON:0003059!5.54e-08!83;UBERON:0007282!5.54e-08!83;UBERON:0009618!5.54e-08!83;UBERON:0007285!5.54e-08!83;UBERON:0000486!6.49e-08!82;UBERON:0000924!8.06e-08!173;UBERON:0006601!8.06e-08!173;UBERON:0002100!1.18e-07!216;UBERON:0002050!1.38e-07!605;UBERON:0005423!1.38e-07!605;UBERON:0004290!1.51e-07!70;UBERON:0005631!1.67e-07!14;UBERON:0000158!1.67e-07!14;UBERON:0004121!1.94e-07!169;UBERON:0000062!2.16e-07!511;UBERON:0000923!2.71e-07!604;UBERON:0005291!2.71e-07!604;UBERON:0006598!2.71e-07!604;UBERON:0002532!2.71e-07!604;UBERON:0002385!7.71e-07!63;UBERON:0001015!7.71e-07!63;UBERON:0000383!7.71e-07!63;UBERON:0001134!8.73e-07!61;UBERON:0002036!8.73e-07!61;UBERON:0003082!8.73e-07!61;UBERON:0004923!9.67e-07!57 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003104,7.03e-11,160;UBERON:0009142,7.03e-11,160;UBERON:0000486,5.39e-08,83;UBERON:0007524,5.47e-08,73;UBERON:0005256,6.60e-08,122;UBERON:0005631,1.01e-07,14;UBERON:0000158,1.01e-07,14;UBERON:0002329,1.23e-07,71;UBERON:0003059,1.23e-07,71;UBERON:0007282,1.23e-07,71;UBERON:0004290,1.23e-07,71;UBERON:0009618,1.23e-07,71;UBERON:0003077,1.25e-07,72;UBERON:0007285,1.25e-07,72;UBERON:0007503,2.33e-07,78;UBERON:0004923,2.42e-07,66;UBERON:0002385,6.62e-07,64;UBERON:0001015,6.62e-07,64;UBERON:0000383,6.62e-07,64;UBERON:0001134,7.58e-07,62;UBERON:0002036,7.58e-07,62;UBERON:0003082,7.58e-07,62;UBERON:0000119,7.76e-07,309 | |||
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| ||
|short_description=p3@ST5 | |||
}} | }} |
Latest revision as of 00:10, 25 September 2015
Short description: | p3@ST5 |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_ST5_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENST00000526057, ENST00000526126, ENST00000526241, ENST00000530938_5end |
EntrezGene: | ST5 |
HGNC: | 11350 |
UniProt: | E9PPL2E9PI67E9PLH6E9PI72 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
migratory neural crest cell | 2.76e-11 | 41 |
neurectodermal cell | 4.43e-10 | 59 |
ectodermal cell | 3.86e-09 | 72 |
embryonic cell | 3.93e-08 | 250 |
glial cell (sensu Vertebrata) | 5.18e-08 | 15 |
glial cell | 5.18e-08 | 15 |
glioblast | 5.18e-08 | 15 |
glioblast (sensu Vertebrata) | 5.18e-08 | 15 |
extraembryonic cell | 1.89e-07 | 19 |
fibroblast | 3.30e-07 | 76 |
muscle cell | 4.40e-07 | 55 |
Ontology term | p-value | n |
---|---|---|
mesenchyme | 7.03e-11 | 160 |
entire embryonic mesenchyme | 7.03e-11 | 160 |
multilaminar epithelium | 5.39e-08 | 83 |
dense mesenchyme tissue | 5.47e-08 | 73 |
trunk mesenchyme | 6.60e-08 | 122 |
extraembryonic membrane | 1.01e-07 | 14 |
membranous layer | 1.01e-07 | 14 |
somite | 1.23e-07 | 71 |
presomitic mesoderm | 1.23e-07 | 71 |
presumptive segmental plate | 1.23e-07 | 71 |
dermomyotome | 1.23e-07 | 71 |
trunk paraxial mesoderm | 1.23e-07 | 71 |
paraxial mesoderm | 1.25e-07 | 72 |
presumptive paraxial mesoderm | 1.25e-07 | 72 |
epithelial vesicle | 2.33e-07 | 78 |
organ component layer | 2.42e-07 | 66 |
muscle tissue | 6.62e-07 | 64 |
musculature | 6.62e-07 | 64 |
musculature of body | 6.62e-07 | 64 |
skeletal muscle tissue | 7.58e-07 | 62 |
striated muscle tissue | 7.58e-07 | 62 |
myotome | 7.58e-07 | 62 |
cell layer | 7.76e-07 | 309 |