FFCP PHASE1:Hg19::chr2:235903707..235903722,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=novel_coding | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr2:235903707..235903722,+ | |||
|coexpression_cluster_id=C125 | |||
|description=CAGE_peak_at_chr2:235903707..235903722,+ | |description=CAGE_peak_at_chr2:235903707..235903722,+ | ||
|id=chr2:235903707..235903722,+ | |id=chr2:235903707..235903722,+ | ||
|ontology_enrichment_celltype=CL:0002057!8.47e-43!42;CL:0000860!6.01e-42!45;CL:0002194!1.08e-28!63;CL:0000576!1.08e-28!63;CL:0000040!1.08e-28!63;CL:0000559!1.08e-28!63;CL:0002009!1.56e-27!65;CL:0000839!6.32e-25!70;CL:0000557!1.90e-24!71;CL:0000766!2.98e-22!76;CL:0000763!2.54e-12!112;CL:0000049!2.54e-12!112;CL:0002087!4.11e-11!119;CL:0002031!2.44e-10!124;CL:0000738!2.92e-08!140;CL:0000063!9.29e-07!578 | |ontology_enrichment_celltype=CL:0002057!8.47e-43!42;CL:0000860!6.01e-42!45;CL:0002194!1.08e-28!63;CL:0000576!1.08e-28!63;CL:0000040!1.08e-28!63;CL:0000559!1.08e-28!63;CL:0002009!1.56e-27!65;CL:0000839!6.32e-25!70;CL:0000557!1.90e-24!71;CL:0000766!2.98e-22!76;CL:0000763!2.54e-12!112;CL:0000049!2.54e-12!112;CL:0002087!4.11e-11!119;CL:0002031!2.44e-10!124;CL:0000738!2.92e-08!140;CL:0000063!9.29e-07!578 | ||
|ontology_enrichment_celltype_v019=CL:0000860;1.29e-84;33!CL:0002057;1.29e-84;33!CL:0000473;2.03e-55;39!CL:0000234;2.03e-55;39!CL:0000576;1.55e-41;48!CL:0000766;7.67e-20;69!CL:0000763;5.15e-11;100!CL:0002087;1.19e-10;104!CL:0000319;5.59e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,2.16e-71,42;CL:0002057,2.16e-71,42;CL:0000473,5.27e-62,48;CL:0000234,5.27e-62,48;CL:0002194,7.46e-49,59;CL:0000576,7.46e-49,59;CL:0000040,7.46e-49,59;CL:0000559,7.46e-49,59;CL:0002009,3.72e-47,61;CL:0000839,2.35e-43,66;CL:0000557,1.16e-42,67;CL:0000766,1.77e-39,72;CL:0000763,3.62e-25,108;CL:0000049,3.62e-25,108;CL:0002087,2.06e-23,115;CL:0002031,2.77e-22,120;CL:0000738,3.18e-19,136;CL:0002032,1.20e-15,161;CL:0000837,1.20e-15,161;CL:0000037,7.75e-15,168;CL:0000988,6.92e-14,177;CL:0000134,3.40e-09,354;CL:0000319,5.59e-09,1;CL:0002320,6.29e-09,361;CL:0000219,5.55e-08,386;CL:0000048,8.01e-07,427 | |||
|ontology_enrichment_development_v019=CL:0002057;6.10e-57;42!CL:0000049;2.64e-10;108 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019=DOID:3030;5.59e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,5.59e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0002371!1.07e-25!80;UBERON:0001474!1.09e-24!86;UBERON:0002405!5.57e-21!115;UBERON:0004765!1.54e-19!101;UBERON:0001434!1.54e-19!101;UBERON:0002390!4.66e-18!102;UBERON:0003061!4.66e-18!102;UBERON:0002193!1.34e-15!112;UBERON:0003081!2.39e-09!216;UBERON:0002204!8.25e-09!167 | |||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002371,5.08e-41,76;UBERON:0001474,9.02e-38,82;UBERON:0004765,4.19e-34,90;UBERON:0002405,6.88e-33,93;UBERON:0002390,5.00e-31,98;UBERON:0003061,5.00e-31,98;UBERON:0001434,2.47e-30,100;UBERON:0002193,8.14e-28,108;UBERON:0002204,1.26e-16,167;UBERON:0003081,5.71e-13,203;UBERON:0000926,9.05e-09,315;UBERON:0004120,9.05e-09,315;UBERON:0006603,9.05e-09,315;UBERON:0002384,1.46e-08,371 | |||
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|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.572471974262113,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.32389366601898,0,1.89017710413434,3.40088349319928,0.727752183563449,1.85943229524548,7.81218987241469,3.09706370895104,2.58923153089935,4.09857130446561,1.18241114944293,0.689491361473237,0.645484683583826,0,2.25890807451126,7.64137220161968,1.34834090667051,1.53041946185451,2.88836124368484,0.639337125799041,2.63881040149373,4.78712778291916,0.426224750532694,3.48251086354301,4.53908179752912,0.622822248995575,2.51248665256743,5.21482918420201,1.08594422352558,1.81619850790011,0.736555271975129,0.632924774881769,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.144846518960824,0,0,0.0945348171640679,0,0.087834785693126,0,0,0,0,0,0,0,0,0,0.198762407366705,0,0,0,0,0,0.208994966536811,0,0,0,0,0,0,0,0,0,0,0,0,0.949265659568129,0,0,0,0,0,0,0.132409180813219,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.117434498643765,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0920498986422993,0,0.355009592516614,0.302256294682921,0.169560592310488,0,0,0,0,0,0,0.207322110030741,0,0,0,0.643240938192885,2.76269842704961,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.579652024875384,0.117408694235822,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.257207374262142,1.41849132023278,0.532844358032199,0,0,0,0,0,0,0,0,0.299918973546171,0,0,0,0.479249710983165,0,0,0.144781306667579,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0.184369168541703,0,0.195801157462741,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.114814448164607,0,0,0,0.15403067420883,0,0,0.105551628892876,0,0,0,0,0,0,0.254876273045038,0,0,0,0,0.256450125116389,0,0,0,0,0.082509499920588,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20453736500431,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.42304773014896,0,0,0,0,0,0,0,0.0730893170861856,0,0,0,0,0,0,0,0,0.240476460754601,0,0,0,0,0,0,0,0,0,0,0.509991088181609,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.157566364614447,0.329663433524666,0.26961417541674,2.36225955635397,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.146552233678082,0,0,0,0.171086837884329,0,0,0,0,0,0,0,0,0,0,0,0,0.157054096250234,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.457680136793847,0,0,0.147855149989634,0,0,0,0,0,0,0,0,0,0,0,0,0,0.400027764663154,0,0,0,0,0,0.260994291965212,2.26705925512272,0,0,0,0.617602894321944,0,0,0,0,1.53744911152768,0.690860683462397,0,0,0,0,0,0,60.9516813709224,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.20170506870352,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0679697329768317,0.0657727735628491,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.098150233615243,0,0,0,0,0,0,0,0,0.11294608203896,0,0,0,0,0.470317296361523,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.143339583151451,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0898252021065869,0,0,0,0,0,0 | ||
|short_description=p@chr2:235903707..235903722,+ | |short_description=p@chr2:235903707..235903722,+ | ||
}} | }} |
Latest revision as of 08:04, 29 July 2015
Short description: | p@chr2:235903707..235903722, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr2:235903707..235903722, + |
Coexpression cluster: | C125_mucinous_alveolar_mesothelioma_Smooth_lung_CD14_Nucleus |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 2.16e-71 | 42 |
CD14-positive, CD16-negative classical monocyte | 2.16e-71 | 42 |
defensive cell | 5.27e-62 | 48 |
phagocyte | 5.27e-62 | 48 |
monopoietic cell | 7.46e-49 | 59 |
monocyte | 7.46e-49 | 59 |
monoblast | 7.46e-49 | 59 |
promonocyte | 7.46e-49 | 59 |
macrophage dendritic cell progenitor | 3.72e-47 | 61 |
myeloid lineage restricted progenitor cell | 2.35e-43 | 66 |
granulocyte monocyte progenitor cell | 1.16e-42 | 67 |
myeloid leukocyte | 1.77e-39 | 72 |
myeloid cell | 3.62e-25 | 108 |
common myeloid progenitor | 3.62e-25 | 108 |
nongranular leukocyte | 2.06e-23 | 115 |
hematopoietic lineage restricted progenitor cell | 2.77e-22 | 120 |
leukocyte | 3.18e-19 | 136 |
hematopoietic oligopotent progenitor cell | 1.20e-15 | 161 |
hematopoietic multipotent progenitor cell | 1.20e-15 | 161 |
hematopoietic stem cell | 7.75e-15 | 168 |
hematopoietic cell | 6.92e-14 | 177 |
mesenchymal cell | 3.40e-09 | 354 |
mucus secreting cell | 5.59e-09 | 1 |
connective tissue cell | 6.29e-09 | 361 |
motile cell | 5.55e-08 | 386 |
multi fate stem cell | 8.01e-07 | 427 |
Ontology term | p-value | n |
---|---|---|
bone marrow | 5.08e-41 | 76 |
bone element | 9.02e-38 | 82 |
skeletal element | 4.19e-34 | 90 |
immune system | 6.88e-33 | 93 |
hematopoietic system | 5.00e-31 | 98 |
blood island | 5.00e-31 | 98 |
skeletal system | 2.47e-30 | 100 |
hemolymphoid system | 8.14e-28 | 108 |
musculoskeletal system | 1.26e-16 | 167 |
lateral plate mesoderm | 5.71e-13 | 203 |
mesoderm | 9.05e-09 | 315 |
mesoderm-derived structure | 9.05e-09 | 315 |
presumptive mesoderm | 9.05e-09 | 315 |
connective tissue | 1.46e-08 | 371 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 5.59e-09 | 1 |