FFCP PHASE1:Hg19::chr19:11201228..11201261,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=3949 | |EntrezGene=3949 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6547 | |HGNC=6547 | ||
|TSSclassifier=strong | |||
|UniProt=P01130 | |UniProt=P01130 | ||
|association_with_transcript=-13bp_to_ENST00000252444_5end | |association_with_transcript=-13bp_to_ENST00000252444_5end | ||
|cluster_id=chr19:11201228..11201261,+ | |||
|description=CAGE_peak_3_at_LDLR_5end | |description=CAGE_peak_3_at_LDLR_5end | ||
|id=chr19:11201228..11201261,+ | |id=chr19:11201228..11201261,+ | ||
|ontology_enrichment_celltype=CL:0002057!1.42e-23!42;CL:0000860!9.01e-21!45;CL:0000766!4.35e-12!76;CL:0000738!1.88e-10!140;CL:0000557!1.22e-09!71;CL:0000839!2.46e-09!70;CL:0002009!5.74e-09!65;CL:0002194!1.07e-08!63;CL:0000576!1.07e-08!63;CL:0000040!1.07e-08!63;CL:0000559!1.07e-08!63;CL:0002031!1.31e-08!124;CL:0002087!6.85e-08!119;CL:0000037!3.78e-07!172;CL:0000566!3.78e-07!172 | |ontology_enrichment_celltype=CL:0002057!1.42e-23!42;CL:0000860!9.01e-21!45;CL:0000766!4.35e-12!76;CL:0000738!1.88e-10!140;CL:0000557!1.22e-09!71;CL:0000839!2.46e-09!70;CL:0002009!5.74e-09!65;CL:0002194!1.07e-08!63;CL:0000576!1.07e-08!63;CL:0000040!1.07e-08!63;CL:0000559!1.07e-08!63;CL:0002031!1.31e-08!124;CL:0002087!6.85e-08!119;CL:0000037!3.78e-07!172;CL:0000566!3.78e-07!172 | ||
|ontology_enrichment_celltype_v019=CL:0000860;4.31e-22;33!CL:0002057;4.31e-22;33!CL:0000576;7.67e-15;48!CL:0000473;1.73e-14;39!CL:0000234;1.73e-14;39!CL:0000766;8.31e-11;69 | |||
|ontology_enrichment_celltype_v019_2=CL:0000860,8.20e-29,42;CL:0002057,8.20e-29,42;CL:0000473,2.53e-23,48;CL:0000234,2.53e-23,48;CL:0000766,2.26e-19,72;CL:0000557,1.18e-15,67;CL:0000738,1.67e-15,136;CL:0002009,2.45e-15,61;CL:0002194,2.98e-15,59;CL:0000576,2.98e-15,59;CL:0000040,2.98e-15,59;CL:0000559,2.98e-15,59;CL:0000839,5.15e-15,66;CL:0002087,1.01e-12,115;CL:0002031,1.23e-12,120;CL:0000037,3.01e-11,168;CL:0000763,3.12e-11,108;CL:0000049,3.12e-11,108;CL:0000988,7.99e-11,177;CL:0002032,1.28e-10,161;CL:0000837,1.28e-10,161 | |||
|ontology_enrichment_development_v019=CL:0002057;1.23e-20;42 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002390!2.72e-09!102;UBERON:0003061!2.72e-09!102;UBERON:0002371!5.44e-09!80;UBERON:0002405!8.34e-08!115;UBERON:0001474!1.29e-07!86;UBERON:0002193!1.45e-07!112 | |ontology_enrichment_uberon=UBERON:0002390!2.72e-09!102;UBERON:0003061!2.72e-09!102;UBERON:0002371!5.44e-09!80;UBERON:0002405!8.34e-08!115;UBERON:0001474!1.29e-07!86;UBERON:0002193!1.45e-07!112 | ||
|ontology_enrichment_uberon_v019= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002390,3.26e-15,98;UBERON:0003061,3.26e-15,98;UBERON:0002371,4.69e-15,76;UBERON:0001474,5.92e-13,82;UBERON:0002193,8.14e-13,108;UBERON:0002405,3.17e-12,93;UBERON:0004765,3.59e-11,90;UBERON:0001434,2.33e-09,100 | |||
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| ||
|short_description=p3@LDLR | |short_description=p3@LDLR | ||
}} | }} |
Latest revision as of 04:17, 25 September 2015
Short description: | p3@LDLR |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_3_at_LDLR_5end |
Coexpression cluster: | NA |
Association with transcript: | -13bp_to_ENST00000252444_5end |
EntrezGene: | LDLR |
HGNC: | 6547 |
UniProt: | P01130 |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
classical monocyte | 8.20e-29 | 42 |
CD14-positive, CD16-negative classical monocyte | 8.20e-29 | 42 |
defensive cell | 2.53e-23 | 48 |
phagocyte | 2.53e-23 | 48 |
myeloid leukocyte | 2.26e-19 | 72 |
granulocyte monocyte progenitor cell | 1.18e-15 | 67 |
leukocyte | 1.67e-15 | 136 |
macrophage dendritic cell progenitor | 2.45e-15 | 61 |
monopoietic cell | 2.98e-15 | 59 |
monocyte | 2.98e-15 | 59 |
monoblast | 2.98e-15 | 59 |
promonocyte | 2.98e-15 | 59 |
myeloid lineage restricted progenitor cell | 5.15e-15 | 66 |
nongranular leukocyte | 1.01e-12 | 115 |
hematopoietic lineage restricted progenitor cell | 1.23e-12 | 120 |
hematopoietic stem cell | 3.01e-11 | 168 |
myeloid cell | 3.12e-11 | 108 |
common myeloid progenitor | 3.12e-11 | 108 |
hematopoietic cell | 7.99e-11 | 177 |
hematopoietic oligopotent progenitor cell | 1.28e-10 | 161 |
hematopoietic multipotent progenitor cell | 1.28e-10 | 161 |
Ontology term | p-value | n |
---|---|---|
hematopoietic system | 3.26e-15 | 98 |
blood island | 3.26e-15 | 98 |
bone marrow | 4.69e-15 | 76 |
bone element | 5.92e-13 | 82 |
hemolymphoid system | 8.14e-13 | 108 |
immune system | 3.17e-12 | 93 |
skeletal element | 3.59e-11 | 90 |
skeletal system | 2.33e-09 | 100 |