FFCP PHASE1:Hg19::chr12:24514988..24515011,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr12:24514988..24515011,-
|short_description=p@chr12:24514988..24515011,-
|description=CAGE_peak_at_chr12:24514988..24515011,-
|association_with_transcript=NA
...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=supported | ||
| | |DPIdataset=robust | ||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |||
|cluster_id=chr12:24514988..24515011,- | |||
|coexpression_cluster_id=C210 | |||
|description=CAGE_peak_at_chr12:24514988..24515011,- | |||
|id=chr12:24514988..24515011,- | |||
|ontology_enrichment_celltype=CL:0000945!1.11e-40!24;CL:0000826!1.11e-40!24;CL:0000236!2.69e-40!14;CL:0000838!8.14e-24!52;CL:0000080!1.27e-23!6;CL:0000542!2.83e-23!53;CL:0000051!2.83e-23!53;CL:0000738!8.71e-17!140;CL:0000988!8.23e-15!182;CL:0002087!8.95e-15!119;CL:0000037!2.15e-12!172;CL:0000566!2.15e-12!172;CL:0000842!4.74e-12!3;CL:0002031!2.73e-10!124;CL:0000224!3.74e-09!4;CL:0002032!3.98e-08!165;CL:0000837!3.98e-08!165 | |||
|ontology_enrichment_celltype_v019=CL:0000236;1.53e-89;13!CL:0000945;1.06e-75;24!CL:0000542;1.45e-29;53!CL:0000785;2.17e-09;1!CL:0000819;2.17e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000236,3.95e-83,14;CL:0000945,8.82e-76,24;CL:0000826,8.82e-76,24;CL:0000838,2.60e-38,52;CL:0000542,1.54e-37,53;CL:0000051,1.54e-37,53;CL:0000988,2.80e-17,177;CL:0000738,1.36e-16,136;CL:0002087,1.20e-15,115;CL:0002031,6.94e-15,120;CL:0000037,7.39e-13,168;CL:0002032,2.13e-10,161;CL:0000837,2.13e-10,161;CL:0000819,1.76e-09,1 | |||
|ontology_enrichment_development_v019=CL:0000051;1.45e-29;53!UBERON:0001045;5.08e-10;1 | |||
|ontology_enrichment_disease=DOID:0060058!1.88e-14!10 | |||
|ontology_enrichment_disease_v019=DOID:0060058;5.18e-21;10!DOID:0060073;2.17e-09;1!DOID:8675;2.17e-09;1 | |||
|ontology_enrichment_disease_v019_2=DOID:0060058,4.57e-21,10;DOID:0060073,1.76e-09,1;DOID:8675,1.76e-09,1 | |||
|ontology_enrichment_uberon=UBERON:0000178!6.98e-20!15;UBERON:0000179!6.98e-20!15;UBERON:0000463!6.98e-20!15;UBERON:0004177!1.43e-08!7;UBERON:0002193!7.28e-07!112;UBERON:0002390!7.33e-07!102;UBERON:0003061!7.33e-07!102 | |||
|ontology_enrichment_uberon_v019=UBERON:0001154;5.08e-10;1!UBERON:0001153;5.08e-10;1!UBERON:0009854;5.08e-10;1!UBERON:0002372;1.15e-09;1!UBERON:0001961;1.15e-09;1!UBERON:0001744;1.15e-09;1!UBERON:0001042;1.15e-09;1!UBERON:0001735;1.15e-09;1!UBERON:0000178;4.08e-09;15!UBERON:0000179;4.08e-09;15!UBERON:0000463;4.08e-09;15!UBERON:0002331;3.64e-08;10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001154,5.31e-10,1;UBERON:0001153,5.31e-10,1;UBERON:0001045,5.31e-10,1;UBERON:0002372,1.15e-09,1;UBERON:0001961,1.15e-09,1;UBERON:0001744,1.15e-09,1;UBERON:0001735,1.15e-09,1;UBERON:0000178,4.13e-09,15;UBERON:0000179,4.13e-09,15;UBERON:0000463,4.13e-09,15;UBERON:0002331,3.55e-08,10;UBERON:0000358,3.55e-08,10;UBERON:0000307,3.55e-08,10;UBERON:0000091,3.55e-08,10;UBERON:0000087,3.55e-08,10;UBERON:0007010,3.55e-08,10;UBERON:0007806,3.55e-08,10;UBERON:0008780,3.55e-08,10;UBERON:0005728,3.55e-08,10 | |||
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| ||
|short_description=p@chr12:24514988..24515011,- | |||
}} | }} |
Latest revision as of 07:38, 24 July 2015
Short description: | p@chr12:24514988..24515011, - |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr12:24514988..24515011, - |
Coexpression cluster: | C210_Burkitt_lymphoma_appendix_acute_diffuse_CD19_tonsil |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
B cell | 3.95e-83 | 14 |
lymphocyte of B lineage | 8.82e-76 | 24 |
pro-B cell | 8.82e-76 | 24 |
lymphoid lineage restricted progenitor cell | 2.60e-38 | 52 |
lymphocyte | 1.54e-37 | 53 |
common lymphoid progenitor | 1.54e-37 | 53 |
hematopoietic cell | 2.80e-17 | 177 |
leukocyte | 1.36e-16 | 136 |
nongranular leukocyte | 1.20e-15 | 115 |
hematopoietic lineage restricted progenitor cell | 6.94e-15 | 120 |
hematopoietic stem cell | 7.39e-13 | 168 |
hematopoietic oligopotent progenitor cell | 2.13e-10 | 161 |
hematopoietic multipotent progenitor cell | 2.13e-10 | 161 |
B-1 B cell | 1.76e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
vermiform appendix | 5.31e-10 | 1 |
caecum | 5.31e-10 | 1 |
midgut | 5.31e-10 | 1 |
tonsil | 1.15e-09 | 1 |
mucosa-associated lymphoid tissue | 1.15e-09 | 1 |
lymphoid tissue | 1.15e-09 | 1 |
tonsillar ring | 1.15e-09 | 1 |
blood | 4.13e-09 | 15 |
haemolymphatic fluid | 4.13e-09 | 15 |
organism substance | 4.13e-09 | 15 |
umbilical cord | 3.55e-08 | 10 |
blastocyst | 3.55e-08 | 10 |
blastula | 3.55e-08 | 10 |
bilaminar disc | 3.55e-08 | 10 |
inner cell mass | 3.55e-08 | 10 |
cleaving embryo | 3.55e-08 | 10 |
connecting stalk | 3.55e-08 | 10 |
inner cell mass derived epiblast | 3.55e-08 | 10 |
extraembryonic mesoderm | 3.55e-08 | 10 |
Ontology term | p-value | n |
---|---|---|
lymphoma | 4.57e-21 | 10 |
lymphatic system cancer | 1.76e-09 | 1 |
lymphosarcoma | 1.76e-09 | 1 |