FFCP PHASE1:Hg19::chr19:6540235..6540238,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr19:6540235..6540238,+ | |||
|description=CAGE_peak_at_chr19:6540235..6540238,+ | |description=CAGE_peak_at_chr19:6540235..6540238,+ | ||
|id=chr19:6540235..6540238,+ | |id=chr19:6540235..6540238,+ | ||
|ontology_enrichment_celltype=CL:0000542!4.91e-08!53;CL:0000051!4.91e-08!53;CL:0000838!2.42e-07!52 | |ontology_enrichment_celltype=CL:0000542!4.91e-08!53;CL:0000051!4.91e-08!53;CL:0000838!2.42e-07!52 | ||
|ontology_enrichment_celltype_v019=CL:0002127;2.54e-09;1!CL:0000911;2.54e-09;1!CL:0000222;2.54e-09;1!CL:0000319;2.54e-09;1!CL:0002379;2.54e-09;1!CL:0000814;2.54e-09;1 | |||
|ontology_enrichment_celltype_v019_2=CL:0000319,1.21e-09,1;CL:0002127,1.32e-09,1;CL:0000914,1.32e-09,1;CL:0000911,1.32e-09,1;CL:0000814,1.32e-09,1;CL:0002042,1.32e-09,1;CL:0002039,1.32e-09,1;CL:0002040,1.32e-09,1;CL:0002041,1.32e-09,1;CL:0002379,2.77e-09,1 | |||
|ontology_enrichment_development_v019=UBERON:0005425;2.54e-09;1 | |||
|ontology_enrichment_disease=DOID:162!1.88e-20!235;DOID:14566!2.51e-20!239;DOID:0050687!1.91e-14!143;DOID:0050686!6.20e-12!137;DOID:305!1.63e-11!106;DOID:2531!1.23e-08!51;DOID:0060083!1.23e-08!51;DOID:1749!1.60e-08!14;DOID:1240!7.54e-07!39 | |ontology_enrichment_disease=DOID:162!1.88e-20!235;DOID:14566!2.51e-20!239;DOID:0050687!1.91e-14!143;DOID:0050686!6.20e-12!137;DOID:305!1.63e-11!106;DOID:2531!1.23e-08!51;DOID:0060083!1.23e-08!51;DOID:1749!1.60e-08!14;DOID:1240!7.54e-07!39 | ||
|ontology_enrichment_disease_v019=DOID:630;2.54e-09;1!DOID:0050177;2.54e-09;1!DOID:3151;2.54e-09;1!DOID:3620;2.54e-09;1!DOID:3030;2.54e-09;1!DOID:3565;2.54e-09;1!DOID:0050427;2.54e-09;1!DOID:3149;2.54e-09;1!DOID:171;7.58e-08;10 | |||
|ontology_enrichment_disease_v019_2=DOID:3030,1.21e-09,1;DOID:630,1.43e-09,1;DOID:0050177,1.43e-09,1;DOID:0050427,1.43e-09,1;DOID:3620,2.77e-09,1;DOID:3565,2.77e-09,1;DOID:3151,5.28e-09,1;DOID:3149,5.28e-09,1;DOID:171,5.86e-08,10;DOID:162,9.48e-08,235;DOID:14566,1.61e-07,239 | |||
|ontology_enrichment_uberon= | |ontology_enrichment_uberon= | ||
|ontology_enrichment_uberon_v019=UBERON:0002346;7.82e-19;4!UBERON:0000923;7.82e-19;4!UBERON:0010316;7.82e-19;4!UBERON:0005291;7.82e-19;4!UBERON:0002050;3.47e-15;5!UBERON:0005423;3.47e-15;5!UBERON:0000941;2.54e-09;1!UBERON:0001785;2.54e-09;1!UBERON:0002464;2.54e-09;1!UBERON:0004904;2.54e-09;1!UBERON:0001021;2.54e-09;1 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000941,1.84e-09,1;UBERON:0001785,1.84e-09,1;UBERON:0002464,1.84e-09,1;UBERON:0004904,1.84e-09,1;UBERON:0001021,1.84e-09,1;UBERON:0003902,1.84e-09,1;UBERON:0005425,1.84e-09,1 | |||
|phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0.568676929949686,0,0,0.401088894940283,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,1.35426486594342,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17447437874188,0.382273228125229,0,0,0,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0.25618263945135,0.130059347559878,0,0.276350017785848,0,0,0,0,0,0,0,0.759059076058509,0,0,0,0,0,0,0,0,0,0.802320587350522,0.289648807765598,0,0,0,0.722878304769133,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0.201057944823262,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68127715990291,0,0.215627574859517,0.256686072559497,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0.411362273086194,0,0,0,0.106824071127473,0.962479855263359,0.980160863924127,0.929015875628594,0,0.0711418433484141,0.159426272728822,0,0,0,0,0,0.684704037099577,0,5.01268954180134,0.169291777801603,0,0,3.40676990152261,0.687010689511529,0,0,0.166849141711909,0.19538809540204,0,0,0.270455678475983,0,0,0.37428108081644,0,0,0.891547074219827,0.284136146806413,0,0.296964680832639,0,0,0,0.556543525114529,0,1.05562704063997,0,0,0,0,1.10776324914963,0,0.359473404589307,0,1.02314474045374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.583209226766509,0,0,0,0,0,0.295547618953547,0,0,0.278847488557207,0,0.113942055847001,0,0.0897576444097721,0,0,0,0,0,0.156980256395025,0.166211681900156,0,0,0,0.189753732724185,0,0.421996129056054,0.489698424477443,0,0,0,0,0,0,0,0.417687798021821,0,0,0,0.729819156862664,0.391329237864179,0,0,0,0,0,0.60129367765797,0,0,0.330991955875499,0,0,0.569219092059585,0.277349346026277,0,0.0979923974143777,0.34823682632161,0,0.171986032471617,0,0,0,0,0.0882561266915003,0,0.137041924646751,0,0,0,0.160317640503067,0,0.19980960958213,0.432271251462318,0,0,0,0.621262677827163,0.471388069233591,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0.492137407573744,0.0846733320657845,0,0,0,0,0,0.2249738915515,0,0,1.0063040627978,0.0788057072991982,0,0.211200673038813,0.179287339332845,1.34340638123612,0,0,0.25426853765475,0,0,0,0,0,0,0.226624183040251,0,3.97520666736664,0,0,0.513260513652988,0,0,0,0,0,0,0.121792598380896,0.638341257770182,0.544017803369474,0,0.306345576763462,0.327872630709804,0.157054096250234,0,0,0.1251909307065,0,0,0,0.415045904808692,0,0,0,1.17632909849086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,1.15571898244382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0.194860308839388,0,0,0.982829546539238,1.72041036127604,0,0,0.106691729694141,0,0,0.184105950251841,0,0,0,0,0.157265941855896,0,0,1.48802444071178,3.59413716351106,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,1.42769420259154,0.490738592505128,1.06172751012966,0.183428598521679,0,0,0,0.795664888465099,0,0.40341013740704,0,0,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,1.58284119923659,0,0,0,0,0,0,0.460935950223117,0,0,0,1.89110145414349,0,0,0,0.840816489941367,0,0.647782773655864,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.473328002922261,0,0,0,0,0,0.111855431797792,0.294450700845729,0.121917924982269,0,0,0,0,0,0.397901550322736,0,0.22589216407792,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.357107877211315,0,0,0,0,0,0.473314686579554,0,0,0,0,0,0,0,0,0,0,0,0,1.0028301571695,0,0,0,0,0,0,0,0.0620747142958579,0.448527450322454,0,0,0,0,0.0673520530145875,0,0,0.569822880276821,1.28072815053259,0,0.0898252021065869,0,0,0,0,0,1.60284246151616 | |phase1_expression=0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.0764134057479513,0.0821005894499457,0,0,0.383829398097213,0.154816123316076,0,0,0,0.0774672005803016,0.568676929949686,0,0,0.401088894940283,0,0,0,0,0,0,0.242584061187816,0,0,0,0,0,0,0,0,1.35426486594342,0,0.272906150057846,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.17447437874188,0.382273228125229,0,0,0,0,0.393010762749165,0.205601498999509,0,0,0,0,0,0,0,0,0.25618263945135,0.130059347559878,0,0.276350017785848,0,0,0,0,0,0,0,0.759059076058509,0,0,0,0,0,0,0,0,0,0.802320587350522,0.289648807765598,0,0,0,0.722878304769133,0,0.144846518960824,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.570471821544449,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.179389635688862,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.441463099414651,0,0,0,0,0.201057944823262,0,0,0,0,0.115930404975077,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.492663237895943,0,0,0,0.25248486685276,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.142977993658148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.68127715990291,0,0.215627574859517,0.256686072559497,0.254094624222463,0,0,0,0,0,0,0,0.12269149171914,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.206768026122887,0,0,0,0,0,0,0,0,0,0,0,0,0.154209693802656,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.15350367472613,0,0,0,0,0.0890320356467374,0,0,0,0.10115778085555,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.66343897524122,0,0,0,0,0,0,0,0,0,0,0.422215270595328,0.658589785919804,0,0,0,0,0,0,0,0,0,0,0,0,0.569647187174163,0,0.411362273086194,0,0,0,0.106824071127473,0.962479855263359,0.980160863924127,0.929015875628594,0,0.0711418433484141,0.159426272728822,0,0,0,0,0,0.684704037099577,0,5.01268954180134,0.169291777801603,0,0,3.40676990152261,0.687010689511529,0,0,0.166849141711909,0.19538809540204,0,0,0.270455678475983,0,0,0.37428108081644,0,0,0.891547074219827,0.284136146806413,0,0.296964680832639,0,0,0,0.556543525114529,0,1.05562704063997,0,0,0,0,1.10776324914963,0,0.359473404589307,0,1.02314474045374,0,0,0,0,0,0,0,0,0,0,0,0,0,0.583209226766509,0,0,0,0,0,0.295547618953547,0,0,0.278847488557207,0,0.113942055847001,0,0.0897576444097721,0,0,0,0,0,0.156980256395025,0.166211681900156,0,0,0,0.189753732724185,0,0.421996129056054,0.489698424477443,0,0,0,0,0,0,0,0.417687798021821,0,0,0,0.729819156862664,0.391329237864179,0,0,0,0,0,0.60129367765797,0,0,0.330991955875499,0,0,0.569219092059585,0.277349346026277,0,0.0979923974143777,0.34823682632161,0,0.171986032471617,0,0,0,0,0.0882561266915003,0,0.137041924646751,0,0,0,0.160317640503067,0,0.19980960958213,0.432271251462318,0,0,0,0.621262677827163,0.471388069233591,0,0,0,0,0,0,0,0,1.05154941711726,0,0,0,0,0,0,0,0,0,0,0,0,0.492137407573744,0.0846733320657845,0,0,0,0,0,0.2249738915515,0,0,1.0063040627978,0.0788057072991982,0,0.211200673038813,0.179287339332845,1.34340638123612,0,0,0.25426853765475,0,0,0,0,0,0,0.226624183040251,0,3.97520666736664,0,0,0.513260513652988,0,0,0,0,0,0,0.121792598380896,0.638341257770182,0.544017803369474,0,0.306345576763462,0.327872630709804,0.157054096250234,0,0,0.1251909307065,0,0,0,0.415045904808692,0,0,0,1.17632909849086,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.26184898228651,1.15571898244382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.276516872303462,0.194860308839388,0,0,0.982829546539238,1.72041036127604,0,0,0.106691729694141,0,0,0.184105950251841,0,0,0,0,0.157265941855896,0,0,1.48802444071178,3.59413716351106,0,0,0,0,0,0,0,0,0.159633859057151,0,0,0,0,1.42769420259154,0.490738592505128,1.06172751012966,0.183428598521679,0,0,0,0.795664888465099,0,0.40341013740704,0,0,0.327543835020193,0.147856086217045,0,0,0,0,0,0,0,1.58284119923659,0,0,0,0,0,0,0.460935950223117,0,0,0,1.89110145414349,0,0,0,0.840816489941367,0,0.647782773655864,0,0.0714765441766563,0,0,0,0,0,0,0,0,0.473328002922261,0,0,0,0,0,0.111855431797792,0.294450700845729,0.121917924982269,0,0,0,0,0,0.397901550322736,0,0.22589216407792,0,0,0,0,0,0,0,0,0,0,0,0,0.0644578879735772,0,0.357107877211315,0,0,0,0,0,0.473314686579554,0,0,0,0,0,0,0,0,0,0,0,0,1.0028301571695,0,0,0,0,0,0,0,0.0620747142958579,0.448527450322454,0,0,0,0,0.0673520530145875,0,0,0.569822880276821,1.28072815053259,0,0.0898252021065869,0,0,0,0,0,1.60284246151616 | ||
|short_description=p@chr19:6540235..6540238,+ | |short_description=p@chr19:6540235..6540238,+ | ||
}} | }} |
Latest revision as of 18:12, 27 July 2015
Short description: | p@chr19:6540235..6540238, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr19:6540235..6540238, + |
Coexpression cluster: | NA |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
mucus secreting cell | 1.21e-09 | 1 |
innate effector T cell | 1.32e-09 | 1 |
immature NK T cell | 1.32e-09 | 1 |
effector T cell | 1.32e-09 | 1 |
mature NK T cell | 1.32e-09 | 1 |
immature NK T cell stage IV | 1.32e-09 | 1 |
immature NK T cell stage I | 1.32e-09 | 1 |
immature NK T cell stage II | 1.32e-09 | 1 |
immature NK T cell stage III | 1.32e-09 | 1 |
meningothelial cell | 2.77e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
cranial nerve II | 1.84e-09 | 1 |
cranial nerve | 1.84e-09 | 1 |
nerve trunk | 1.84e-09 | 1 |
nerve connecting eye with brain | 1.84e-09 | 1 |
nerve | 1.84e-09 | 1 |
retinal neural layer | 1.84e-09 | 1 |
presumptive neural retina | 1.84e-09 | 1 |
Ontology term | p-value | n |
---|---|---|
mucinous adenocarcinoma | 1.21e-09 | 1 |
genetic disease | 1.43e-09 | 1 |
monogenic disease | 1.43e-09 | 1 |
xeroderma pigmentosum | 1.43e-09 | 1 |
central nervous system cancer | 2.77e-09 | 1 |
meningioma | 2.77e-09 | 1 |
skin squamous cell carcinoma | 5.28e-09 | 1 |
keratoacanthoma | 5.28e-09 | 1 |
neuroectodermal tumor | 5.86e-08 | 10 |
cancer | 9.48e-08 | 235 |
disease of cellular proliferation | 1.61e-07 | 239 |