FFCP PHASE1:Hg19::chr3:60761181..60761194,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=NA | |EntrezGene=NA | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=no_gencodeV16_or_build2_transcript | |||
|HGNC=NA | |HGNC=NA | ||
|TSSclassifier=strong | |||
|UniProt=NA | |UniProt=NA | ||
|association_with_transcript=NA | |association_with_transcript=NA | ||
|cluster_id=chr3:60761181..60761194,+ | |||
|coexpression_cluster_id=C108 | |||
|description=CAGE_peak_at_chr3:60761181..60761194,+ | |description=CAGE_peak_at_chr3:60761181..60761194,+ | ||
|id=chr3:60761181..60761194,+ | |id=chr3:60761181..60761194,+ | ||
|ontology_enrichment_celltype=CL:0002150!7.42e-21!3;CL:0000861!7.42e-21!3;CL:0000054!5.08e-09!2;CL:0000137!5.08e-09!2;CL:0000092!5.08e-09!2;CL:0000235!6.50e-07!10 | |ontology_enrichment_celltype=CL:0002150!7.42e-21!3;CL:0000861!7.42e-21!3;CL:0000054!5.08e-09!2;CL:0000137!5.08e-09!2;CL:0000092!5.08e-09!2;CL:0000235!6.50e-07!10 | ||
|ontology_enrichment_celltype_v019=CL:0000322;1.40e-14;3!CL:0002327;2.53e-11;4 | |||
|ontology_enrichment_celltype_v019_2=CL:0000322,1.40e-14,3;CL:0002327,2.53e-11,4 | |||
|ontology_enrichment_development_v019=UBERON:0008425;6.62e-41;1!UBERON:0007123;3.22e-09;5 | |||
|ontology_enrichment_disease=DOID:0060085!1.04e-16!1;DOID:3165!1.04e-16!1;DOID:0060121!1.04e-16!1;DOID:2438!1.04e-16!1;DOID:4418!1.04e-16!1;DOID:5093!1.53e-16!4;DOID:1612!1.53e-16!4;DOID:3111!1.93e-16!1;DOID:3603!1.93e-16!1;DOID:3910!3.71e-09!2;DOID:200!5.08e-09!2;DOID:4305!5.08e-09!2 | |||
|ontology_enrichment_disease_v019=DOID:5093;2.22e-40;4!DOID:1612;2.22e-40;4!DOID:3910;3.81e-21;2!DOID:3908;2.74e-09;5!DOID:1325;5.38e-07;7!DOID:3904;5.38e-07;7 | |||
|ontology_enrichment_disease_v019_2=DOID:5093,2.71e-40,4;DOID:1612,2.71e-40,4;DOID:3910,3.81e-21,2;DOID:3908,2.74e-09,5;DOID:1325,5.38e-07,7;DOID:3904,5.38e-07,7 | |||
|ontology_enrichment_uberon=UBERON:0007195!7.57e-17!1;UBERON:0004903!3.71e-09!2;UBERON:0002173!3.71e-09!2;UBERON:0002186!3.71e-09!2;UBERON:0000310!3.65e-07!10 | |||
|ontology_enrichment_uberon_v019=UBERON:0007195;2.21e-40;1!UBERON:0004903;3.81e-21;2!UBERON:0002173;3.81e-21;2!UBERON:0002186;3.81e-21;2!UBERON:0000310;6.93e-17;10!UBERON:0001443;1.88e-15;11!UBERON:0004821;1.40e-14;3!UBERON:0007499;1.40e-14;3!UBERON:0003215;1.40e-14;3!UBERON:0010368;1.40e-14;3!UBERON:0009911;1.40e-14;3!UBERON:0002299;1.40e-14;3!UBERON:0006524;1.40e-14;3!UBERON:0008874;1.40e-14;3!UBERON:0002169;1.40e-14;3!UBERON:0004894;1.40e-14;3!UBERON:0001911;2.53e-11;4!UBERON:0009856;2.80e-11;4!UBERON:0002046;3.22e-09;5 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0007195,2.21e-40,1;UBERON:0004903,3.81e-21,2;UBERON:0002173,3.81e-21,2;UBERON:0002186,3.81e-21,2;UBERON:0000310,7.51e-17,10;UBERON:0001443,2.02e-15,11;UBERON:0004821,1.40e-14,3;UBERON:0003215,1.40e-14,3;UBERON:0010368,1.40e-14,3;UBERON:0009911,1.40e-14,3;UBERON:0002299,1.40e-14,3;UBERON:0006524,1.40e-14,3;UBERON:0008874,1.40e-14,3;UBERON:0002169,1.40e-14,3;UBERON:0004894,1.40e-14,3;UBERON:0001911,2.53e-11,4;UBERON:0005333,2.53e-11,4;UBERON:0008425,2.53e-11,4;UBERON:0005311,2.53e-11,4;UBERON:0002046,2.97e-09,5;UBERON:0004117,2.97e-09,5;UBERON:0007689,2.97e-09,5;UBERON:0007123,2.97e-09,5;UBERON:0003091,2.97e-09,5;UBERON:0000915,1.15e-07,52 | |||
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|short_description=p@chr3:60761181..60761194,+ | |short_description=p@chr3:60761181..60761194,+ | ||
}} | }} |
Latest revision as of 23:02, 29 July 2015
Short description: | p@chr3:60761181..60761194, + |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_at_chr3:60761181..60761194, + |
Coexpression cluster: | C108_breast_hepatoblastoma_MCF7_parotid_salivary_submaxillary_prostate |
Association with transcript: | NA |
EntrezGene: | NA |
HGNC: | NA |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pneumocyte | 1.40e-14 | 3 |
mammary gland epithelial cell | 2.53e-11 | 4 |
Ontology term | p-value | n |
---|---|---|
stroma of bone marrow | 2.21e-40 | 1 |
bronchoalveolar duct junction | 3.81e-21 | 2 |
alveolar duct | 3.81e-21 | 2 |
bronchiole | 3.81e-21 | 2 |
breast | 7.51e-17 | 10 |
chest | 2.02e-15 | 11 |
pulmonary alveolus epithelium | 1.40e-14 | 3 |
alveolus | 1.40e-14 | 3 |
pulmonary lobule | 1.40e-14 | 3 |
lobule | 1.40e-14 | 3 |
alveolus of lung | 1.40e-14 | 3 |
alveolar system | 1.40e-14 | 3 |
pulmonary acinus | 1.40e-14 | 3 |
alveolar sac | 1.40e-14 | 3 |
alveolar wall | 1.40e-14 | 3 |
mammary gland | 2.53e-11 | 4 |
mammary bud | 2.53e-11 | 4 |
mammary ridge | 2.53e-11 | 4 |
mammary placode | 2.53e-11 | 4 |
thyroid gland | 2.97e-09 | 5 |
pharyngeal pouch | 2.97e-09 | 5 |
thyroid diverticulum | 2.97e-09 | 5 |
pharyngeal pouch 2 | 2.97e-09 | 5 |
thyroid primordium | 2.97e-09 | 5 |
thoracic segment of trunk | 1.15e-07 | 52 |
Ontology term | p-value | n |
---|---|---|
thoracic cancer | 2.71e-40 | 4 |
breast cancer | 2.71e-40 | 4 |
lung adenocarcinoma | 3.81e-21 | 2 |
non-small cell lung carcinoma | 2.74e-09 | 5 |
bronchus cancer | 5.38e-07 | 7 |
bronchogenic carcinoma | 5.38e-07 | 7 |