FFCP PHASE1:Hg19::chr1:156105995..156106029,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=supported | |||
|DPIdataset=robust | |||
|EntrezGene=4000 | |EntrezGene=4000 | ||
|GencodeV16b_All_Build2_RSEM10_CPAT_consensus=gencodeV16_protein_coding | |||
|HGNC=6636 | |HGNC=6636 | ||
|TSSclassifier=strong | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-54bp_to_ENST00000459904_5end | |association_with_transcript=-54bp_to_ENST00000459904_5end | ||
|cluster_id=chr1:156105995..156106029,+ | |||
|description=CAGE_peak_8_at_LMNA_5end | |description=CAGE_peak_8_at_LMNA_5end | ||
|id=chr1:156105995..156106029,+ | |id=chr1:156105995..156106029,+ | ||
|ontology_enrichment_celltype=CL:0000055!2.26e-18!180;CL:0000548!2.05e-17!679;CL:0000004!2.05e-17!679;CL:0000255!2.05e-17!679;CL:0000012!1.47e-16!682;CL:0000144!3.08e-16!625;CL:0002371!2.11e-15!591;CL:0000057!8.92e-14!75;CL:0000220!1.66e-10!246;CL:0002321!5.49e-10!248;CL:0000222!9.25e-10!119;CL:0000003!1.36e-08!722;CL:0000063!4.64e-08!578;CL:0000183!6.82e-08!59;CL:0000680!1.51e-07!57;CL:0000056!1.51e-07!57;CL:0000355!1.51e-07!57;CL:0002620!3.60e-07!23;CL:0000187!7.83e-07!54;CL:0000192!9.72e-07!42;CL:0000514!9.72e-07!42 | |ontology_enrichment_celltype=CL:0000055!2.26e-18!180;CL:0000548!2.05e-17!679;CL:0000004!2.05e-17!679;CL:0000255!2.05e-17!679;CL:0000012!1.47e-16!682;CL:0000144!3.08e-16!625;CL:0002371!2.11e-15!591;CL:0000057!8.92e-14!75;CL:0000220!1.66e-10!246;CL:0002321!5.49e-10!248;CL:0000222!9.25e-10!119;CL:0000003!1.36e-08!722;CL:0000063!4.64e-08!578;CL:0000183!6.82e-08!59;CL:0000680!1.51e-07!57;CL:0000056!1.51e-07!57;CL:0000355!1.51e-07!57;CL:0002620!3.60e-07!23;CL:0000187!7.83e-07!54;CL:0000192!9.72e-07!42;CL:0000514!9.72e-07!42 | ||
|ontology_enrichment_celltype_v019= | |||
|ontology_enrichment_celltype_v019_2=CL:0000057,1.69e-13,76;CL:0000048,1.48e-10,427;CL:0000723,3.18e-10,433;CL:0000034,2.17e-09,441;CL:0002320,7.43e-08,361 | |||
|ontology_enrichment_development_v019= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000926!7.00e-12!448;UBERON:0004120!7.00e-12!448;UBERON:0006603!7.00e-12!448;UBERON:0000914!9.40e-12!83;UBERON:0002329!9.40e-12!83;UBERON:0003077!9.40e-12!83;UBERON:0003059!9.40e-12!83;UBERON:0007282!9.40e-12!83;UBERON:0009618!9.40e-12!83;UBERON:0007285!9.40e-12!83;UBERON:0003102!3.88e-11!95;UBERON:0002199!9.07e-10!45;UBERON:0002416!9.07e-10!45;UBERON:0004290!1.32e-09!70;UBERON:0002204!4.58e-09!167;UBERON:0001637!1.09e-08!42;UBERON:0003509!1.09e-08!42;UBERON:0004572!1.09e-08!42;UBERON:0000468!1.37e-08!659;UBERON:0000486!1.58e-08!82;UBERON:0002097!5.40e-08!40;UBERON:0002049!1.22e-07!79;UBERON:0007798!1.22e-07!79;UBERON:0005256!1.99e-07!143;UBERON:0001981!4.05e-07!60;UBERON:0007500!4.05e-07!60;UBERON:0004537!4.05e-07!60;UBERON:0006965!4.05e-07!60;UBERON:0000467!5.87e-07!625;UBERON:0004872!8.71e-07!84;UBERON:0000480!8.78e-07!626 | |||
|ontology_enrichment_uberon_v019=UBERON:0002067;3.24e-09;9!UBERON:0003102;1.70e-08;50!UBERON:0001013;6.13e-08;14!UBERON:0002199;5.04e-07;46!UBERON:0002416;5.04e-07;46 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002199,1.40e-10,46;UBERON:0002416,1.40e-10,46;UBERON:0002067,4.54e-09,9;UBERON:0004016,4.54e-09,9;UBERON:0010083,4.54e-09,9;UBERON:0003102,6.83e-09,99;UBERON:0007524,1.31e-08,73;UBERON:0002329,2.56e-08,71;UBERON:0003059,2.56e-08,71;UBERON:0007282,2.56e-08,71;UBERON:0004290,2.56e-08,71;UBERON:0009618,2.56e-08,71;UBERON:0001013,4.03e-08,14;UBERON:0003077,4.60e-08,72;UBERON:0007285,4.60e-08,72;UBERON:0002097,4.67e-08,41;UBERON:0007503,7.11e-08,78;UBERON:0000926,1.04e-07,315;UBERON:0004120,1.04e-07,315;UBERON:0006603,1.04e-07,315;UBERON:0000486,1.97e-07,83;UBERON:0002384,3.40e-07,371;UBERON:0001637,6.22e-07,42;UBERON:0003509,6.22e-07,42;UBERON:0004572,6.22e-07,42 | |||
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| ||
|short_description=p8@LMNA | |short_description=p8@LMNA | ||
}} | }} |
Latest revision as of 15:06, 17 September 2015
Short description: | p8@LMNA |
---|---|
Species: | Human (Homo sapiens) |
DPI dataset: | Robust |
TSS-like-by-RIKEN-classifier(Yes/No): | Yes |
DHS support(Yes/No): | Yes |
Description: | CAGE_peak_8_at_LMNA_5end |
Coexpression cluster: | NA |
Association with transcript: | -54bp_to_ENST00000459904_5end |
EntrezGene: | LMNA |
HGNC: | 6636 |
UniProt: | NA |
Genome view: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
fibroblast | 1.69e-13 | 76 |
multi fate stem cell | 1.48e-10 | 427 |
somatic stem cell | 3.18e-10 | 433 |
stem cell | 2.17e-09 | 441 |
connective tissue cell | 7.43e-08 | 361 |
Ontology term | p-value | n |
---|---|---|
integument | 1.40e-10 | 46 |
integumental system | 1.40e-10 | 46 |
dermis | 4.54e-09 | 9 |
dermatome | 4.54e-09 | 9 |
future dermis | 4.54e-09 | 9 |
surface structure | 6.83e-09 | 99 |
dense mesenchyme tissue | 1.31e-08 | 73 |
somite | 2.56e-08 | 71 |
presomitic mesoderm | 2.56e-08 | 71 |
presumptive segmental plate | 2.56e-08 | 71 |
dermomyotome | 2.56e-08 | 71 |
trunk paraxial mesoderm | 2.56e-08 | 71 |
adipose tissue | 4.03e-08 | 14 |
paraxial mesoderm | 4.60e-08 | 72 |
presumptive paraxial mesoderm | 4.60e-08 | 72 |
skin of body | 4.67e-08 | 41 |
epithelial vesicle | 7.11e-08 | 78 |
mesoderm | 1.04e-07 | 315 |
mesoderm-derived structure | 1.04e-07 | 315 |
presumptive mesoderm | 1.04e-07 | 315 |
multilaminar epithelium | 1.97e-07 | 83 |
connective tissue | 3.40e-07 | 371 |
artery | 6.22e-07 | 42 |
arterial blood vessel | 6.22e-07 | 42 |
arterial system | 6.22e-07 | 42 |